Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0011605

Physical Location & Seq

Genomic Coordinates Reverse (-)

50840626 .. 50840940

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003619

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGCGACAACCACCACTGCCAAGACTTTGGCTTCAACTCCCAAACTCAAGAGCTTCGCCCCAGTCCTCCTGCTCCTCCTCATCCTCGTCTTATCAACCATATCCGACGGATCTGCGAATCGGATCCGGTTGGATAAGAATAAGATCCCCAGCTGCTGTGACATGTCGTCAGAAGGGCAGTGCTCCCAGAACCCCAAGTGCTGGTGGTGCCGCAGCGAGTCCCTAAAAGACATGTGGTTCCCCAAGTCTGAGGCTCTGCGATTGCCCCCTCAGATCTTCACTTGCAAACTGATCAGATTCAGCCAAAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

11.71

Weight (kDa)

9.5

Isoelectric Point (pI)

52.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011605)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G068400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0011991
rosa_laevigata	RLG00000001485 RLG00000003619 RLG00000031877
rosa_multiflora	Rmu_sc0004594.1_g000001 Rmu_sc0008676.1_g000020
rosa_roxburghii	Rroxscaffold_1G00064600
rosa_rugosa	Rorug03G0201200 Rorug04G0460300 Rorug05G0349100 Rorug05G0418600 Rorug06G0268400
rosa_samantha	Rh5AG092200 Rh5BG088000 Rh5CG101900 Rh5DG088600 Rh6BG151900 Rh6DG136100
rosa_wichuraiana	Rw5G008050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	207
AccB7I	CCANNNNNTGG	1 cut(s)	201
AciI	CCGC	1 cut(s)	211
AclWI	GGATC	4 cut(s)	118, 118, 131, 139
AcsI	RAATTY	1 cut(s)	308
AfiI	CCNNNNNNNGG	1 cut(s)	201
AflIII	ACRYGT	2 cut(s)	162, 231
AgsI	TTSAA	1 cut(s)	36
AhdI	GACNNNNNGTC	1 cut(s)	166
AluBI	AGCT	2 cut(s)	54, 153
AluI	AGCT	2 cut(s)	54, 153
Alw21I	GWGCWC	1 cut(s)	185
AlwI	GGATC	4 cut(s)	118, 118, 131, 139
AlwNI	CAGNNNCTG	1 cut(s)	156
ApeKI	GCWGC	2 cut(s)	153, 213
ApoI	RAATTY	1 cut(s)	308
BamHI	GGATCC	1 cut(s)	123
BanI	GGYRCC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	2 cut(s)	140, 225
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BclI	TGATCA	1 cut(s)	291
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	3 cut(s)	154, 211, 214
BlsI	GCNGC	3 cut(s)	155, 212, 215
BmeRI	GACNNNNNGTC	1 cut(s)	166
BmiI	GGNNCC	3 cut(s)	125, 209, 239
BmrI	ACTGGG	1 cut(s)	56
BmuI	ACTGGG	1 cut(s)	56
BpuEI	CTTGAG	1 cut(s)	32
BsaWI	WCCGGW	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse1I	ACTGG	1 cut(s)	62
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMII	CTCAG	2 cut(s)	240, 284
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	2 cut(s)	65, 68
BseXI	GCAGC	2 cut(s)	140, 225
BseYI	CCCAGC	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	127
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	5 cut(s)	110, 123, 144, 273, 291
BspACI	CCGC	1 cut(s)	211
BspCNI	CTCAG	2 cut(s)	241, 283
BspLI	GGNNCC	3 cut(s)	125, 209, 239
BspPI	GGATC	4 cut(s)	118, 118, 131, 139
BspT107I	GGYRCC	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	62
BssMI	GATC	5 cut(s)	110, 123, 144, 273, 291
BstDEI	CTNAG	2 cut(s)	249, 270
BstF5I	GGATG	1 cut(s)	81
BstKTI	GATC	5 cut(s)	113, 126, 147, 276, 294
BstMBI	GATC	5 cut(s)	110, 123, 144, 273, 291
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstNSI	RCATGY	2 cut(s)	166, 235
BstV1I	GCAGC	2 cut(s)	140, 225
BstX2I	RGATCY	4 cut(s)	110, 123, 144, 273
BstXI	CCANNNNNNTGG	1 cut(s)	28
BstYI	RGATCY	4 cut(s)	110, 123, 144, 273
BtsCI	GGATG	1 cut(s)	81
BtsI	GCAGTG	2 cut(s)	15, 185
BtsIMutI	CAGTG	2 cut(s)	15, 185
CaiI	CAGNNNCTG	1 cut(s)	156
CviAII	CATG	2 cut(s)	163, 232
CviJI	RGCY	5 cut(s)	32, 54, 153, 254, 303
CviKI_1	RGCY	5 cut(s)	32, 54, 153, 254, 303
DdeI	CTNAG	2 cut(s)	249, 270
DpnI	GATC	5 cut(s)	112, 125, 146, 275, 293
DpnII	GATC	5 cut(s)	110, 123, 144, 273, 291
DriI	GACNNNNNGTC	1 cut(s)	166
Eam1105I	GACNNNNNGTC	1 cut(s)	166
FaeI	CATG	2 cut(s)	166, 235
FaiI	YATR	3 cut(s)	101, 164, 233
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	2 cut(s)	162, 231
FbaI	TGATCA	1 cut(s)	291
Fnu4HI	GCNGC	3 cut(s)	154, 211, 214
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	3 cut(s)	154, 211, 214
GluI	GCNGC	3 cut(s)	154, 211, 214
GsaI	CCCAGC	1 cut(s)	153
HapII	CCGG	1 cut(s)	127
Hin1II	CATG	2 cut(s)	166, 235
HinfI	GANTC	3 cut(s)	118, 218, 297
HpaII	CCGG	1 cut(s)	127
Hpy188I	TCNGA	6 cut(s)	106, 123, 172, 250, 273, 296
Hpy188III	TCNNGA	1 cut(s)	49
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	167
HpyCH4V	TGCA	1 cut(s)	285
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpyF3I	CTNAG	2 cut(s)	249, 270
Hsp92II	CATG	2 cut(s)	166, 235
Ksp22I	TGATCA	1 cut(s)	291
Kzo9I	GATC	5 cut(s)	110, 123, 144, 273, 291
LmnI	GCTCC	2 cut(s)	78, 188
LpnPI	CCDG	6 cut(s)	75, 83, 140, 163, 187, 200
Lsp1109I	GCAGC	2 cut(s)	140, 225
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	5 cut(s)	112, 125, 146, 275, 293
MboI	GATC	5 cut(s)	110, 123, 144, 273, 291
MboII	GAAGA	1 cut(s)	268
MflI	RGATCY	4 cut(s)	110, 123, 144, 273
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	1 cut(s)	308
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	2 cut(s)	111, 129
MnlI	CCTC	6 cut(s)	77, 86, 89, 95, 244, 279
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	1 cut(s)	207
NdeII	GATC	5 cut(s)	110, 123, 144, 273, 291
NlaIII	CATG	2 cut(s)	166, 235
NlaIV	GGNNCC	3 cut(s)	125, 209, 239
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	2 cut(s)	166, 235
PciI	ACATGT	2 cut(s)	162, 231
PfeI	GAWTC	2 cut(s)	118, 297
PflMI	CCANNNNNTGG	1 cut(s)	201
PkrI	GCNGC	3 cut(s)	155, 212, 215
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PscI	ACATGT	2 cut(s)	162, 231
PspFI	CCCAGC	1 cut(s)	149
PspN4I	GGNNCC	3 cut(s)	125, 209, 239
PstNI	CAGNNNCTG	1 cut(s)	156
PsuI	RGATCY	4 cut(s)	110, 123, 144, 273
PvuII	CAGCTG	1 cut(s)	153
SatI	GCNGC	3 cut(s)	154, 211, 214
Sau3AI	GATC	5 cut(s)	110, 123, 144, 273, 291
SchI	GAGTC	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	2 cut(s)	56, 155
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	1 cut(s)	308
SsiI	CCGC	1 cut(s)	211
TasI	AATT	1 cut(s)	308
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	2 cut(s)	118, 297
TscAI	CASTG	2 cut(s)	22, 185
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	2 cut(s)	153, 213
Tsp45I	GTSAC	1 cut(s)	158
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	2 cut(s)	22, 185
Van91I	CCANNNNNTGG	1 cut(s)	201
XapI	RAATTY	1 cut(s)	308
XceI	RCATGY	2 cut(s)	166, 235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.