Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0010546

Physical Location & Seq

Genomic Coordinates Forward (+)

16224852 .. 16231127

Gene Structure 6276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G244600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAGTTGGAACCCGCACATGGAAGTTCATTACACCTACACCGGCTGTCCTTATAGCACGGCGGGTAGCTTTATGGAGTATTTTGAAGGTCTTACCTATGAACATGTGAACTTTATTTTTTCAGGCGATTCACATGCTCAGGAGAGTGCTTACCCAACAATGAATACAAATTATTACAAGTTTGGGTTATCTGAACCTGGGAATACTTCATATTATGATCTTGGTTTTGGTCATGCTTATGAGTTGAATGATCCTGACCCAAGAGGTGGTGAACAAAGAAGGCTTTTGCAGAGCTCTTCAACAACGACTAATGAACAAAATGTGGCAGTGAATTCAGAATGGGAAGGAAATGCAAACACTTCTACGCGCGACAACCCCATAGAATGCCCACGGAGAAATCAAAATTCCCAGGATTATCAGGTTATTTGGCAAGACAACATTGATCCTGATAGCATGACTTACGAGGAATTACTTGAGTTAGGTGAGGCAGTTGGAACTCAAAGTCGAGGTCTTTCTCAAGATCAGCTTTCTTTGCTTCCAATCTCGAAGTACAAATGCAGCTTTTTCTCGAGAAAGAAATCACGAGATGAGAGATGTGTGATTTGCCAGATGGAATATAAACGAGGGGACCGACGGATTACTCTACCGTGCAAACACCTCTATCATGCTGGTTGTGGGACCAGATGGCTTAGCATCAACAAGGCTTGCCCAATATGTTACACTGAGGTGTTTGCTGATGCGTCAAAGTGCGAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

253

Amino Acids

28.9

Weight (kDa)

5.29

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29040
malus_domestica	MD03G1178200.v1.1 MD11G1198000.v1.1
prunus_persica	Prupe.4G244600_v2.0.a1 Prupe.4G244600_v2.0.a1 Prupe.4G244600_v2.0.a1 Prupe.4G244600_v2.0.a1
pyrus_communis	pycom03g13490 pycom11g17140
rosa_chinensis	RchiOBHm_Chr5g0051621
rosa_laevigata	RLG00000034872
rosa_multiflora	Rmu_ssc0000089.1_g000034
rosa_roxburghii	Rroxscaffold_1G00027100
rosa_rugosa	Rorug05G0278700 Rorug05G0278800 Rorug05G0278900
rosa_samantha	Rh5AG350000 Rh5BG361800 Rh5CG386700 Rh5DG376700
rosa_wichuraiana	Rw5G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	266
AccII	CGCG	2 cut(s)	367, 369
AciI	CCGC	2 cut(s)	14, 62
AclWI	GGATC	2 cut(s)	245, 437
AcsI	RAATTY	2 cut(s)	331, 403
AfaI	GTAC	1 cut(s)	551
AfiI	CCNNNNNNNGG	2 cut(s)	19, 266
AflIII	ACRYGT	1 cut(s)	103
AgsI	TTSAA	3 cut(s)	86, 247, 300
AjnI	CCWGG	2 cut(s)	196, 408
AleI	CACNNNNGTG	1 cut(s)	725
AluBI	AGCT	4 cut(s)	69, 294, 526, 561
AluI	AGCT	4 cut(s)	69, 294, 526, 561
Alw21I	GWGCWC	1 cut(s)	296
AlwI	GGATC	2 cut(s)	245, 437
Ama87I	CYCGRG	1 cut(s)	568
ApeKI	GCWGC	1 cut(s)	558
ApoI	RAATTY	2 cut(s)	331, 403
ArsI	GACNNNNNNTTYG	2 cut(s)	493, 525
AspLEI	GCGC	1 cut(s)	369
AspS9I	GGNCC	2 cut(s)	628, 678
AsuHPI	GGTGA	2 cut(s)	281, 494
AvaI	CYCGRG	1 cut(s)	568
AvaII	GGWCC	2 cut(s)	628, 678
BanII	GRGCYC	1 cut(s)	296
BauI	CACGAG	1 cut(s)	582
Bbv12I	GWGCWC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	570
BccI	CCATC	2 cut(s)	604, 678
BceAI	ACGGC	1 cut(s)	75
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	2 cut(s)	198, 410
BisI	GCNGC	1 cut(s)	559
BlpI	GCTNAGC	1 cut(s)	689
BlsI	GCNGC	1 cut(s)	560
Bme1390I	CCNGG	2 cut(s)	198, 410
Bme18I	GGWCC	2 cut(s)	628, 678
BmeT110I	CYCGRG	1 cut(s)	568
BmgT120I	GGNCC	2 cut(s)	628, 678
BmiI	GGNNCC	3 cut(s)	11, 629, 679
BmrFI	CCNGG	2 cut(s)	198, 410
BmsI	GCATC	2 cut(s)	702, 727
Bpu10I	CCTNAGC	1 cut(s)	138
Bpu1102I	GCTNAGC	1 cut(s)	689
BpuEI	CTTGAG	2 cut(s)	494, 501
BsaJI	CCNNGG	3 cut(s)	197, 389, 408
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 266
Bse118I	RCCGGY	1 cut(s)	41
BseBI	CCWGG	2 cut(s)	198, 410
BseDI	CCNNGG	3 cut(s)	197, 389, 408
BseLI	CCNNNNNNNGG	2 cut(s)	19, 266
BseMII	CTCAG	2 cut(s)	152, 714
BseXI	GCAGC	1 cut(s)	570
Bsh1236I	CGCG	2 cut(s)	367, 369
BsiHKAI	GWGCWC	1 cut(s)	296
BsiHKCI	CYCGRG	1 cut(s)	568
BsiSI	CCGG	1 cut(s)	42
BslFI	GGGAC	2 cut(s)	641, 691
BslI	CCNNNNNNNGG	2 cut(s)	19, 266
BsmFI	GGGAC	2 cut(s)	641, 691
BsmI	GAATGC	1 cut(s)	389
BsoBI	CYCGRG	1 cut(s)	568
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	4 cut(s)	217, 250, 442, 520
Bsp1720I	GCTNAGC	1 cut(s)	689
BspACI	CCGC	2 cut(s)	14, 62
BspCNI	CTCAG	2 cut(s)	151, 715
BspFNI	CGCG	2 cut(s)	367, 369
BspLI	GGNNCC	3 cut(s)	11, 629, 679
BspPI	GGATC	2 cut(s)	245, 437
BspQI	GCTCTTC	1 cut(s)	301
BsrFI	RCCGGY	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	3 cut(s)	197, 389, 408
BssMI	GATC	4 cut(s)	217, 250, 442, 520
BssSI	CACGAG	1 cut(s)	582
Bst2BI	CACGAG	1 cut(s)	582
Bst2UI	CCWGG	2 cut(s)	198, 410
Bst4CI	ACNGT	1 cut(s)	648
Bst6I	CTCTTC	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	706
BstDEI	CTNAG	3 cut(s)	138, 689, 723
BstDSI	CCRYGG	1 cut(s)	389
BstFNI	CGCG	2 cut(s)	367, 369
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	4 cut(s)	220, 253, 445, 523
BstMBI	GATC	4 cut(s)	217, 250, 442, 520
BstMWI	GCNNNNNNNGC	1 cut(s)	532
BstNI	CCWGG	2 cut(s)	198, 410
BstNSI	RCATGY	2 cut(s)	107, 137
BstSCI	CCNGG	2 cut(s)	196, 408
BstUI	CGCG	2 cut(s)	367, 369
BstV1I	GCAGC	1 cut(s)	570
BtgI	CCRYGG	1 cut(s)	389
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	2 cut(s)	333, 720
Cac8I	GCNNGC	1 cut(s)	706
CfoI	GCGC	1 cut(s)	369
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	628, 678
CseI	GACGC	1 cut(s)	729
Csp6I	GTAC	1 cut(s)	550
CviAII	CATG	6 cut(s)	19, 104, 134, 233, 454, 665
CviJI	RGCY	8 cut(s)	45, 69, 283, 294, 526, 561, 688, 704
CviKI_1	RGCY	8 cut(s)	45, 69, 283, 294, 526, 561, 688, 704
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	3 cut(s)	138, 689, 723
DpnI	GATC	4 cut(s)	219, 252, 444, 522
DpnII	GATC	4 cut(s)	217, 250, 442, 520
Eam1104I	CTCTTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	301
Ecl136II	GAGCTC	1 cut(s)	294
Eco24I	GRGCYC	1 cut(s)	296
Eco47I	GGWCC	2 cut(s)	628, 678
Eco53kI	GAGCTC	1 cut(s)	294
Eco88I	CYCGRG	1 cut(s)	568
EcoICRI	GAGCTC	1 cut(s)	294
EcoRI	GAATTC	1 cut(s)	331
EcoRII	CCWGG	2 cut(s)	196, 408
EcoT38I	GRGCYC	1 cut(s)	296
FaeI	CATG	6 cut(s)	22, 107, 137, 236, 457, 668
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FaqI	GGGAC	2 cut(s)	641, 691
FatI	CATG	6 cut(s)	18, 103, 133, 232, 453, 664
FauI	CCCGC	2 cut(s)	21, 55
Fnu4HI	GCNGC	1 cut(s)	559
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	559
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	1 cut(s)	559
HapII	CCGG	1 cut(s)	42
HgaI	GACGC	1 cut(s)	729
HhaI	GCGC	1 cut(s)	369
Hin1II	CATG	6 cut(s)	22, 107, 137, 236, 457, 668
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	2 cut(s)	281, 494
Hpy166II	GTNNAC	2 cut(s)	109, 272
Hpy188I	TCNGA	2 cut(s)	193, 337
Hpy188III	TCNNGA	8 cut(s)	140, 254, 446, 518, 544, 568, 570, 582
Hpy8I	GTNNAC	2 cut(s)	109, 272
Hpy99I	CGWCG	1 cut(s)	636
HpyAV	CCTTC	3 cut(s)	80, 273, 338
HpyCH4III	ACNGT	1 cut(s)	648
HpyCH4V	TGCA	4 cut(s)	289, 353, 558, 651
HpyF10VI	GCNNNNNNNGC	1 cut(s)	532
HpyF3I	CTNAG	3 cut(s)	138, 689, 723
Hsp92II	CATG	6 cut(s)	22, 107, 137, 236, 457, 668
HspAI	GCGC	1 cut(s)	367
Kzo9I	GATC	4 cut(s)	217, 250, 442, 520
LguI	GCTCTTC	1 cut(s)	301
Lsp1109I	GCAGC	1 cut(s)	570
LweI	GCATC	2 cut(s)	702, 727
MaeIII	GTNAC	1 cut(s)	716
MalI	GATC	4 cut(s)	219, 252, 444, 522
MboI	GATC	4 cut(s)	217, 250, 442, 520
MboII	GAAGA	1 cut(s)	288
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	4 cut(s)	169, 331, 403, 467
MmeI	TCCRAC	1 cut(s)	472
MnlI	CCTC	7 cut(s)	257, 457, 478, 500, 617, 668, 718
MslI	CAYNNNNRTG	2 cut(s)	237, 725
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	2 cut(s)	198, 410
Mva1269I	GAATGC	1 cut(s)	389
MvaI	CCWGG	2 cut(s)	198, 410
MvnI	CGCG	2 cut(s)	367, 369
MwoI	GCNNNNNNNGC	1 cut(s)	532
NdeII	GATC	4 cut(s)	217, 250, 442, 520
NlaIII	CATG	6 cut(s)	22, 107, 137, 236, 457, 668
NlaIV	GGNNCC	3 cut(s)	11, 629, 679
NspI	RCATGY	2 cut(s)	107, 137
OliI	CACNNNNGTG	1 cut(s)	725
PaeR7I	CTCGAG	1 cut(s)	568
PciI	ACATGT	1 cut(s)	103
PciSI	GCTCTTC	1 cut(s)	301
PcsI	WCGNNNNNNNCGW	1 cut(s)	628
PctI	GAATGC	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	128
PflMI	CCANNNNNTGG	1 cut(s)	266
PkrI	GCNGC	1 cut(s)	560
PscI	ACATGT	1 cut(s)	103
Psp124BI	GAGCTC	1 cut(s)	296
Psp6I	CCWGG	2 cut(s)	196, 408
PspGI	CCWGG	2 cut(s)	196, 408
PspN4I	GGNNCC	3 cut(s)	11, 629, 679
PspPI	GGNCC	2 cut(s)	628, 678
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
RseI	CAYNNNNRTG	2 cut(s)	237, 725
SacI	GAGCTC	1 cut(s)	296
SapI	GCTCTTC	1 cut(s)	301
SatI	GCNGC	1 cut(s)	559
Sau3AI	GATC	4 cut(s)	217, 250, 442, 520
Sau96I	GGNCC	2 cut(s)	628, 678
ScrFI	CCNGG	2 cut(s)	198, 410
SduI	GDGCHC	1 cut(s)	296
SfaNI	GCATC	2 cut(s)	702, 727
Sfr274I	CTCGAG	1 cut(s)	568
SinI	GGWCC	2 cut(s)	628, 678
SlaI	CTCGAG	1 cut(s)	568
SmiMI	CAYNNNNRTG	2 cut(s)	237, 725
SmlI	CTYRAG	3 cut(s)	473, 516, 568
SmoI	CTYRAG	3 cut(s)	473, 516, 568
Sse9I	AATT	4 cut(s)	169, 331, 403, 467
SsiI	CCGC	2 cut(s)	14, 62
SstI	GAGCTC	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	196, 408
TaaI	ACNGT	1 cut(s)	648
TaqI	TCGA	3 cut(s)	505, 545, 569
TaqII	GACCGA	1 cut(s)	645
TasI	AATT	4 cut(s)	169, 331, 403, 467
TatI	WGTACW	1 cut(s)	549
TfiI	GAWTC	1 cut(s)	128
TscAI	CASTG	2 cut(s)	333, 727
TseI	GCWGC	1 cut(s)	558
TspDTI	ATGAA	5 cut(s)	17, 114, 176, 198, 327
TspGWI	ACGGA	2 cut(s)	406, 649
TspRI	CASTG	2 cut(s)	333, 727
Van91I	CCANNNNNTGG	1 cut(s)	266
VpaK11BI	GGWCC	2 cut(s)	628, 678
XapI	RAATTY	2 cut(s)	331, 403
XceI	RCATGY	2 cut(s)	107, 137
XhoI	CTCGAG	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.