Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010546

Physical Location & Seq

Genomic Coordinates Reverse (-)

19165612 .. 19168807

Gene Structure 3196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g17140.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGACTAATGAACAGAATGTGGCAGTGAACTCAGAATGGGAAGGAAATGCAAATACTTCTACACCCAACAACCCCATAGAATGTCCACGGAGCCATCAAAATTCCCATGATCATCAGGTTATTTGGCAAGACAACATCGATCCTGACAGCATGAGTTACGAGGAATTACTTGAGTTAGGTGAGGCAGTTGGAACTCAAAGTCGAGGTCTCTCCCAAGATCAGATCTCCTTGCTTCCAATCTCAAAGTACAAATGCAGCTTTTTCTTGAGAAAGAAATCACGAGACGAGAGATGTGTGATTTGCCAGATGGAATATAAACGAGGGGACCGGCGGATTGCTCTACCGTGCAAACACCTCTATCATGCTGGTTGTGGGACCAGATGGCTAAGCATCAACAAGGCTTGCCCAATGTGTTACACTGAGGTGTTTGGTGACGCGTCAAAGAGCGCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

152

Amino Acids

17.19

Weight (kDa)

6.51

Isoelectric Point (pI)

50.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29040
malus_domestica	MD03G1178200.v1.1 MD11G1198000.v1.1
prunus_persica	Prupe.4G244600_v2.0.a1 Prupe.4G244600_v2.0.a1 Prupe.4G244600_v2.0.a1 Prupe.4G244600_v2.0.a1
pyrus_communis	pycom03g13490 pycom11g17140
rosa_chinensis	RchiOBHm_Chr5g0051621
rosa_laevigata	RLG00000034872
rosa_multiflora	Rmu_ssc0000089.1_g000034
rosa_roxburghii	Rroxscaffold_1G00027100
rosa_rugosa	Rorug05G0278700 Rorug05G0278800 Rorug05G0278900
rosa_samantha	Rh5AG350000 Rh5BG361800 Rh5CG386700 Rh5DG376700
rosa_wichuraiana	Rw5G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	437
AciI	CCGC	1 cut(s)	331
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	100
AfaI	GTAC	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	435
AleI	CACNNNNGTG	1 cut(s)	422
AluBI	AGCT	1 cut(s)	258
AluI	AGCT	1 cut(s)	258
Alw26I	GTCTC	2 cut(s)	212, 276
AlwI	GGATC	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	255
ApoI	RAATTY	1 cut(s)	100
ArsI	GACNNNNNNTTYG	2 cut(s)	190, 222
AspLEI	GCGC	1 cut(s)	449
AspS9I	GGNCC	2 cut(s)	325, 375
AsuHPI	GGTGA	2 cut(s)	191, 443
AvaII	GGWCC	2 cut(s)	325, 375
BauI	CACGAG	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	267
BccI	CCATC	3 cut(s)	102, 301, 375
BclI	TGATCA	1 cut(s)	109
BcoDI	GTCTC	2 cut(s)	212, 276
BglII	AGATCT	1 cut(s)	222
BisI	GCNGC	1 cut(s)	256
BlpI	GCTNAGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	257
Bme18I	GGWCC	2 cut(s)	325, 375
BmgT120I	GGNCC	2 cut(s)	325, 375
BmiI	GGNNCC	3 cut(s)	92, 326, 376
BmsI	GCATC	1 cut(s)	399
Bpu1102I	GCTNAGC	1 cut(s)	386
BpuEI	CTTGAG	2 cut(s)	191, 286
Bsa29I	ATCGAT	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	86
Bse118I	RCCGGY	1 cut(s)	327
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	86
BseMII	CTCAG	2 cut(s)	45, 411
BseXI	GCAGC	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	437
BshVI	ATCGAT	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	328
BslFI	GGGAC	2 cut(s)	338, 388
BsmAI	GTCTC	2 cut(s)	212, 276
BsmBI	CGTCTC	1 cut(s)	276
BsmFI	GGGAC	2 cut(s)	338, 388
Bso31I	GGTCTC	1 cut(s)	212
Bsp143I	GATC	4 cut(s)	109, 139, 217, 222
Bsp1720I	GCTNAGC	1 cut(s)	386
BspACI	CCGC	1 cut(s)	331
BspCNI	CTCAG	2 cut(s)	44, 412
BspDI	ATCGAT	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	437
BspLI	GGNNCC	3 cut(s)	92, 326, 376
BspPI	GGATC	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	212
BsrFI	RCCGGY	1 cut(s)	327
BssAI	RCCGGY	1 cut(s)	327
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	4 cut(s)	109, 139, 217, 222
BssSI	CACGAG	1 cut(s)	279
Bst2BI	CACGAG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	345
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	3 cut(s)	31, 386, 420
BstDSI	CCRYGG	1 cut(s)	86
BstFNI	CGCG	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	449
BstKTI	GATC	4 cut(s)	112, 142, 220, 225
BstMAI	GTCTC	2 cut(s)	212, 276
BstMBI	GATC	4 cut(s)	109, 139, 217, 222
BstUI	CGCG	1 cut(s)	437
BstV1I	GCAGC	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
Bsu15I	ATCGAT	1 cut(s)	138
BsuTUI	ATCGAT	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	86
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	2 cut(s)	30, 417
Cac8I	GCNNGC	1 cut(s)	403
CfoI	GCGC	1 cut(s)	449
Cfr10I	RCCGGY	1 cut(s)	327
Cfr13I	GGNCC	2 cut(s)	325, 375
ClaI	ATCGAT	1 cut(s)	138
CseI	GACGC	2 cut(s)	426, 443
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	3 cut(s)	107, 151, 362
CviJI	RGCY	4 cut(s)	93, 258, 385, 401
CviKI_1	RGCY	4 cut(s)	93, 258, 385, 401
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	3 cut(s)	31, 386, 420
DpnI	GATC	4 cut(s)	111, 141, 219, 224
DpnII	GATC	4 cut(s)	109, 139, 217, 222
EciI	GGCGGA	1 cut(s)	346
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	2 cut(s)	325, 375
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	3 cut(s)	110, 154, 365
FaiI	YATR	5 cut(s)	77, 108, 152, 315, 363
FaqI	GGGAC	2 cut(s)	338, 388
FatI	CATG	3 cut(s)	106, 150, 361
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	256
Fsp4HI	GCNGC	1 cut(s)	256
GlaI	GCGC	1 cut(s)	448
GluI	GCNGC	1 cut(s)	256
HapII	CCGG	1 cut(s)	328
HgaI	GACGC	2 cut(s)	426, 443
HhaI	GCGC	1 cut(s)	449
Hin1II	CATG	3 cut(s)	110, 154, 365
Hin6I	GCGC	1 cut(s)	447
HinP1I	GCGC	1 cut(s)	447
HpaII	CCGG	1 cut(s)	328
HphI	GGTGA	2 cut(s)	191, 443
Hpy166II	GTNNAC	2 cut(s)	28, 86
Hpy188I	TCNGA	2 cut(s)	34, 222
Hpy188III	TCNNGA	3 cut(s)	143, 265, 279
Hpy8I	GTNNAC	2 cut(s)	28, 86
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	345
HpyCH4V	TGCA	3 cut(s)	50, 255, 348
HpyF3I	CTNAG	3 cut(s)	31, 386, 420
Hsp92II	CATG	3 cut(s)	110, 154, 365
HspAI	GCGC	1 cut(s)	447
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	109, 139, 217, 222
LmnI	GCTCC	1 cut(s)	90
LpnPI	CCDG	6 cut(s)	101, 156, 317, 341, 351, 391
Lsp1109I	GCAGC	1 cut(s)	267
LweI	GCATC	1 cut(s)	399
MaeIII	GTNAC	3 cut(s)	155, 413, 431
MalI	GATC	4 cut(s)	111, 141, 219, 224
MboI	GATC	4 cut(s)	109, 139, 217, 222
MflI	RGATCY	1 cut(s)	222
MluCI	AATT	2 cut(s)	100, 164
MluI	ACGCGT	1 cut(s)	435
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	6 cut(s)	154, 175, 197, 314, 365, 415
MslI	CAYNNNNRTG	1 cut(s)	422
MspI	CCGG	1 cut(s)	328
MvnI	CGCG	1 cut(s)	437
NdeII	GATC	4 cut(s)	109, 139, 217, 222
NlaIII	CATG	3 cut(s)	110, 154, 365
NlaIV	GGNNCC	3 cut(s)	92, 326, 376
NmuCI	GTSAC	1 cut(s)	431
OliI	CACNNNNGTG	1 cut(s)	422
PkrI	GCNGC	1 cut(s)	257
PspN4I	GGNNCC	3 cut(s)	92, 326, 376
PspPI	GGNCC	2 cut(s)	325, 375
PsuI	RGATCY	1 cut(s)	222
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
RseI	CAYNNNNRTG	1 cut(s)	422
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	4 cut(s)	109, 139, 217, 222
Sau96I	GGNCC	2 cut(s)	325, 375
SetI	ASST	6 cut(s)	120, 181, 208, 260, 357, 426
SfaNI	GCATC	1 cut(s)	399
SinI	GGWCC	2 cut(s)	325, 375
SmiMI	CAYNNNNRTG	1 cut(s)	422
SmlI	CTYRAG	2 cut(s)	170, 265
SmoI	CTYRAG	2 cut(s)	170, 265
Sse9I	AATT	2 cut(s)	100, 164
SsiI	CCGC	1 cut(s)	331
TaaI	ACNGT	1 cut(s)	345
TaqI	TCGA	2 cut(s)	138, 202
TasI	AATT	2 cut(s)	100, 164
TatI	WGTACW	1 cut(s)	246
TscAI	CASTG	2 cut(s)	30, 424
TseFI	GTSAC	1 cut(s)	431
TseI	GCWGC	1 cut(s)	255
Tsp45I	GTSAC	1 cut(s)	431
TspDTI	ATGAA	1 cut(s)	24
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	2 cut(s)	30, 424
VpaK11BI	GGWCC	2 cut(s)	325, 375
XapI	RAATTY	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.