Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010546

Physical Location & Seq

Genomic Coordinates Forward (+)

34123593 .. 34129685

Gene Structure 6093 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00027100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAGTTGGAACCCGCATATGGGAGTTCATTACCCCTACAACAGCTGTCCCTATAGCACGGTGGGTAGCTTTATGGACTATGTTGAAGGCCTCACCTACGAACATGTGAACTTTATTTTTTCAGGGGATTCACATGCTCAGGAGAGCACTTACCCATCAATGAATACGAACTATTACAAGTTTGGGTTAACTGAACCTGGGAATACTTCATATTATGATCTTGGTTTTCGTCATTCCTATGAGTTCAATGATCCTATCTCAAGAAGTGGTGAAGAAACAAGGCCCTTGCAGTACTCTTCAACTATTCCTAATGAACAGAATGTGGCAAGGGATCCACCATGCGAAGGAAGTGCAAACACTTCTGCATGTGACAACCCCAGAGAATTATCCTCGTATATTTCAGCCCCTCGAAGATATCAGAACTCCCAGGATTATCAGGTTATTTTGGAAGACAACATTGACCCTGATAGCATGACTTACGAGGAATTACTAGAATTAGGTGAGGCAGTTGGAACTGAAAGCCGAGGTCTTTCCCAAGATATGCTTTCTTTGCTTCCAATCTCGAAGTACAAGTGCAGCTTTTTCTCAAGAAAGAAATCACGGAGTGAGAGGTGTGTGATTTGCCAGATGGAATATAAACGAGGGGATCGGCAGATCACTTTGCCGTGCAAACACCTCTATCATGCTGGATGTGGAACCAGATGGCTTAGCATGAACAAGGCTTGCCCAATATGCTACACCGAGGTATTTGGCAATGGATCGATGAGCAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

258

Amino Acids

29.45

Weight (kDa)

5.53

Isoelectric Point (pI)

53.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	200 - 245	1.4e-06	RING-H2 zinc finger domain
zf-C3HC4_3	PF13920	202 - 249	7.6e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	204 - 245	1e-12	Ring finger domain
zf-C3HC4_2	PF13923	204 - 245	1.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	205 - 231	1.3e-06	RING-like zinc finger
zf-C3HC4	PF00097	205 - 245	1.3e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29040
malus_domestica	MD03G1178200.v1.1 MD11G1198000.v1.1
prunus_persica	Prupe.4G244600_v2.0.a1 Prupe.4G244600_v2.0.a1 Prupe.4G244600_v2.0.a1 Prupe.4G244600_v2.0.a1
pyrus_communis	pycom03g13490 pycom11g17140
rosa_chinensis	RchiOBHm_Chr5g0051621
rosa_laevigata	RLG00000034872
rosa_multiflora	Rmu_ssc0000089.1_g000034
rosa_roxburghii	Rroxscaffold_1G00027100
rosa_rugosa	Rorug05G0278700 Rorug05G0278800 Rorug05G0278900
rosa_samantha	Rh5AG350000 Rh5BG361800 Rh5CG386700 Rh5DG376700
rosa_wichuraiana	Rw5G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	5 cut(s)	245, 326, 339, 654, 766
AdeI	CACNNNGTG	1 cut(s)	605
AfaI	GTAC	2 cut(s)	293, 569
AfiI	CCNNNNNNNGG	3 cut(s)	19, 20, 344
AflIII	ACRYGT	1 cut(s)	103
AgsI	TTSAA	3 cut(s)	86, 247, 300
AjnI	CCWGG	2 cut(s)	196, 426
AluBI	AGCT	3 cut(s)	45, 69, 579
AluI	AGCT	3 cut(s)	45, 69, 579
Alw21I	GWGCWC	1 cut(s)	149
AlwI	GGATC	5 cut(s)	245, 326, 339, 654, 766
AoxI	GGCC	2 cut(s)	88, 281
ApeKI	GCWGC	1 cut(s)	576
AspS9I	GGNCC	1 cut(s)	282
AsuHPI	GGTGA	3 cut(s)	85, 281, 512
BamHI	GGATCC	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	588
BccI	CCATC	3 cut(s)	163, 622, 696
BceAI	ACGGC	1 cut(s)	649
BcgI	CGANNNNNNTGC	2 cut(s)	332, 366
BciT130I	CCWGG	2 cut(s)	198, 428
BfaI	CTAG	1 cut(s)	491
BfmI	CTRYAG	1 cut(s)	52
BisI	GCNGC	1 cut(s)	577
BlpI	GCTNAGC	1 cut(s)	707
BlsI	GCNGC	1 cut(s)	578
BmcAI	AGTACT	1 cut(s)	293
Bme1390I	CCNGG	2 cut(s)	198, 428
BmgT120I	GGNCC	1 cut(s)	282
BmiI	GGNNCC	3 cut(s)	11, 333, 697
BmrFI	CCNGG	2 cut(s)	198, 428
BpiI	GAAGAC	1 cut(s)	456
Bpu10I	CCTNAGC	1 cut(s)	138
Bpu1102I	GCTNAGC	1 cut(s)	707
BpuEI	CTTGAG	2 cut(s)	244, 571
Bsa29I	ATCGAT	1 cut(s)	761
BsaJI	CCNNGG	4 cut(s)	197, 426, 523, 741
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 20, 344
Bse3DI	GCAATG	1 cut(s)	760
BseBI	CCWGG	2 cut(s)	198, 428
BseCI	ATCGAT	1 cut(s)	761
BseDI	CCNNGG	4 cut(s)	197, 426, 523, 741
BseGI	GGATG	1 cut(s)	695
BseLI	CCNNNNNNNGG	3 cut(s)	19, 20, 344
BseMI	GCAATG	1 cut(s)	760
BseMII	CTCAG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	588
BsgI	GTGCAG	1 cut(s)	595
BshFI	GGCC	2 cut(s)	90, 283
BshVI	ATCGAT	1 cut(s)	761
BsiHKAI	GWGCWC	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	3 cut(s)	19, 20, 344
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	2 cut(s)	90, 283
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	6 cut(s)	217, 250, 331, 646, 654, 758
Bsp1720I	GCTNAGC	1 cut(s)	707
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	2 cut(s)	90, 283
BspCNI	CTCAG	1 cut(s)	151
BspDI	ATCGAT	1 cut(s)	761
BspLI	GGNNCC	3 cut(s)	11, 333, 697
BspPI	GGATC	5 cut(s)	245, 326, 339, 654, 766
BsrDI	GCAATG	1 cut(s)	760
BssECI	CCNNGG	4 cut(s)	197, 426, 523, 741
BssMI	GATC	6 cut(s)	217, 250, 331, 646, 654, 758
Bst2UI	CCWGG	2 cut(s)	198, 428
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	724
BstDEI	CTNAG	2 cut(s)	138, 707
BstF5I	GGATG	1 cut(s)	695
BstKTI	GATC	6 cut(s)	220, 253, 334, 649, 657, 761
BstMBI	GATC	6 cut(s)	217, 250, 331, 646, 654, 758
BstMWI	GCNNNNNNNGC	2 cut(s)	550, 732
BstNI	CCWGG	2 cut(s)	198, 428
BstNSI	RCATGY	3 cut(s)	107, 137, 369
BstSCI	CCNGG	2 cut(s)	196, 426
BstSFI	CTRYAG	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	588
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
Bsu15I	ATCGAT	1 cut(s)	761
BsuRI	GGCC	2 cut(s)	90, 283
BsuTUI	ATCGAT	1 cut(s)	761
BtsCI	GGATG	1 cut(s)	695
Cac8I	GCNNGC	1 cut(s)	724
Cfr13I	GGNCC	1 cut(s)	282
ClaI	ATCGAT	1 cut(s)	761
Csp6I	GTAC	2 cut(s)	292, 568
CviAII	CATG	7 cut(s)	104, 134, 339, 366, 472, 683, 712
CviJI	RGCY	9 cut(s)	45, 69, 90, 283, 404, 522, 579, 706, 722
CviKI_1	RGCY	9 cut(s)	45, 69, 90, 283, 404, 522, 579, 706, 722
CviQI	GTAC	2 cut(s)	292, 568
DdeI	CTNAG	2 cut(s)	138, 707
DpnI	GATC	6 cut(s)	219, 252, 333, 648, 656, 760
DpnII	GATC	6 cut(s)	217, 250, 331, 646, 654, 758
DraIII	CACNNNGTG	1 cut(s)	605
Eam1104I	CTCTTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	301
Eco147I	AGGCCT	1 cut(s)	90
Eco32I	GATATC	1 cut(s)	416
EcoO109I	RGGNCCY	1 cut(s)	282
EcoRII	CCWGG	2 cut(s)	196, 426
EcoRV	GATATC	1 cut(s)	416
FaeI	CATG	7 cut(s)	107, 137, 342, 369, 475, 686, 715
FalI	AAGNNNNNCTT	4 cut(s)	528, 560, 563, 595
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	7 cut(s)	103, 133, 338, 365, 471, 682, 711
FauI	CCCGC	1 cut(s)	21
FauNDI	CATATG	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	577
FokI	GGATG	1 cut(s)	702
Fsp4HI	GCNGC	1 cut(s)	577
FspBI	CTAG	1 cut(s)	491
GluI	GCNGC	1 cut(s)	577
HaeIII	GGCC	2 cut(s)	90, 283
Hin1II	CATG	7 cut(s)	107, 137, 342, 369, 475, 686, 715
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HinfI	GANTC	1 cut(s)	128
HpaI	GTTAAC	1 cut(s)	189
HphI	GGTGA	3 cut(s)	85, 281, 512
Hpy166II	GTNNAC	2 cut(s)	109, 189
Hpy188I	TCNGA	1 cut(s)	420
Hpy188III	TCNNGA	4 cut(s)	140, 261, 562, 588
Hpy8I	GTNNAC	2 cut(s)	109, 189
HpyAV	CCTTC	2 cut(s)	80, 338
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	5 cut(s)	289, 353, 365, 576, 669
HpyF10VI	GCNNNNNNNGC	2 cut(s)	550, 732
HpyF3I	CTNAG	2 cut(s)	138, 707
Hsp92II	CATG	7 cut(s)	107, 137, 342, 369, 475, 686, 715
KspAI	GTTAAC	1 cut(s)	189
Kzo9I	GATC	6 cut(s)	217, 250, 331, 646, 654, 758
Lsp1109I	GCAGC	1 cut(s)	588
MaeI	CTAG	1 cut(s)	491
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	6 cut(s)	219, 252, 333, 648, 656, 760
MboI	GATC	6 cut(s)	217, 250, 331, 646, 654, 758
MboII	GAAGA	4 cut(s)	284, 288, 423, 461
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	3 cut(s)	383, 485, 494
MmeI	TCCRAC	1 cut(s)	490
MseI	TTAA	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	45
MspR9I	CCNGG	2 cut(s)	198, 428
MvaI	CCWGG	2 cut(s)	198, 428
MwoI	GCNNNNNNNGC	2 cut(s)	550, 732
NdeI	CATATG	1 cut(s)	18
NdeII	GATC	6 cut(s)	217, 250, 331, 646, 654, 758
NlaIII	CATG	7 cut(s)	107, 137, 342, 369, 475, 686, 715
NlaIV	GGNNCC	3 cut(s)	11, 333, 697
NmeAIII	GCCGAG	1 cut(s)	548
NmuCI	GTSAC	1 cut(s)	368
NspI	RCATGY	3 cut(s)	107, 137, 369
PceI	AGGCCT	1 cut(s)	90
PciI	ACATGT	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	578
PscI	ACATGT	1 cut(s)	103
Psp6I	CCWGG	2 cut(s)	196, 426
PspGI	CCWGG	2 cut(s)	196, 426
PspN4I	GGNNCC	3 cut(s)	11, 333, 697
PspPI	GGNCC	1 cut(s)	282
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	45
RsaI	GTAC	2 cut(s)	293, 569
RsaNI	GTAC	2 cut(s)	292, 568
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	1 cut(s)	577
Sau3AI	GATC	6 cut(s)	217, 250, 331, 646, 654, 758
Sau96I	GGNCC	1 cut(s)	282
ScaI	AGTACT	1 cut(s)	293
ScrFI	CCNGG	2 cut(s)	198, 428
SduI	GDGCHC	1 cut(s)	149
SfcI	CTRYAG	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	2 cut(s)	259, 586
SmoI	CTYRAG	2 cut(s)	259, 586
Sse9I	AATT	3 cut(s)	383, 485, 494
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	491
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	2 cut(s)	196, 426
TaaI	ACNGT	1 cut(s)	61
TaqI	TCGA	3 cut(s)	409, 563, 761
TasI	AATT	3 cut(s)	383, 485, 494
TatI	WGTACW	2 cut(s)	291, 567
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	1 cut(s)	576
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	5 cut(s)	17, 176, 198, 327, 728
TspGWI	ACGGA	1 cut(s)	616
XceI	RCATGY	3 cut(s)	107, 137, 369
XspI	CTAG	1 cut(s)	491
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.