Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0010546

Physical Location & Seq

Genomic Coordinates Reverse (-)

14514108 .. 14516803

Gene Structure 2696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g13490.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGACTAATGAACAGAATGTGGCTGTGAACTCAGAATGGGAAGGAAGTGTGAATACTTCTACACGCCACAACCCCAGAGAATGCCCACGGAGACATCAAAATTCCGATGATAACCAGGTTATTTGGCAAGACAACATTGATCCTGACATCATGAGTTACGAGGAATTACTTGAGTTAGGTGAGACTGTTGGCACTCAAAATCGCGGTCTCTCCCAAGATCAGATCTCGTTGCTTCCAATCTCAAAGTACAAATGCAGCTTTTTCTCGAGAAAGAAATCACGAGACGAGAGATGTGTGATTTGCCAGATGGAATATAAACGAGGGGACCGGCGGATTGCTCTACCATGCAAACACCTCTATCATGCTGGTTGTGGGAGCAGATGGCTTAGCATCAACAAGGCAAGCTGTTGTGGCTTGCCCAATATGTTACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

145

Amino Acids

16.62

Weight (kDa)

7.58

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29040
malus_domestica	MD03G1178200.v1.1 MD11G1198000.v1.1
prunus_persica	Prupe.4G244600_v2.0.a1 Prupe.4G244600_v2.0.a1 Prupe.4G244600_v2.0.a1 Prupe.4G244600_v2.0.a1
pyrus_communis	pycom03g13490 pycom11g17140
rosa_chinensis	RchiOBHm_Chr5g0051621
rosa_laevigata	RLG00000034872
rosa_multiflora	Rmu_ssc0000089.1_g000034
rosa_roxburghii	Rroxscaffold_1G00027100
rosa_rugosa	Rorug05G0278700 Rorug05G0278800 Rorug05G0278900
rosa_samantha	Rh5AG350000 Rh5BG361800 Rh5CG386700 Rh5DG376700
rosa_wichuraiana	Rw5G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	204
AciI	CCGC	2 cut(s)	204, 331
AclWI	GGATC	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	100
AfaI	GTAC	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	2 cut(s)	258, 405
AluI	AGCT	2 cut(s)	258, 405
Alw26I	GTCTC	4 cut(s)	85, 176, 212, 276
AlwI	GGATC	1 cut(s)	134
Ama87I	CYCGRG	1 cut(s)	265
ApeKI	GCWGC	1 cut(s)	255
ApoI	RAATTY	1 cut(s)	100
ArsI	GACNNNNNNTTYG	2 cut(s)	190, 222
AspS9I	GGNCC	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	191
AvaI	CYCGRG	1 cut(s)	265
AvaII	GGWCC	1 cut(s)	325
BarI	GAAGNNNNNNTAC	2 cut(s)	37, 69
BauI	CACGAG	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	267
BccI	CCATC	2 cut(s)	301, 375
BciT130I	CCWGG	1 cut(s)	116
BcoDI	GTCTC	4 cut(s)	85, 176, 212, 276
BglII	AGATCT	1 cut(s)	222
BisI	GCNGC	1 cut(s)	256
BlpI	GCTNAGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	257
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	1 cut(s)	325
BmeT110I	CYCGRG	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	326
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	1 cut(s)	399
Bpu1102I	GCTNAGC	1 cut(s)	386
BpuEI	CTTGAG	1 cut(s)	191
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	86
Bse118I	RCCGGY	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	86
BseMII	CTCAG	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	1 cut(s)	328
BslFI	GGGAC	1 cut(s)	338
BsmAI	GTCTC	4 cut(s)	85, 176, 212, 276
BsmBI	CGTCTC	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	338
BsmI	GAATGC	1 cut(s)	86
Bso31I	GGTCTC	1 cut(s)	212
BsoBI	CYCGRG	1 cut(s)	265
Bsp143I	GATC	3 cut(s)	139, 217, 222
Bsp1720I	GCTNAGC	1 cut(s)	386
BspACI	CCGC	2 cut(s)	204, 331
BspCNI	CTCAG	1 cut(s)	44
BspFNI	CGCG	1 cut(s)	204
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	326
BspPI	GGATC	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	212
BsrFI	RCCGGY	1 cut(s)	327
BssAI	RCCGGY	1 cut(s)	327
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	3 cut(s)	139, 217, 222
BssSI	CACGAG	1 cut(s)	279
Bst2BI	CACGAG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	187
BstC8I	GCNNGC	2 cut(s)	403, 416
BstDEI	CTNAG	2 cut(s)	31, 386
BstDSI	CCRYGG	1 cut(s)	86
BstFNI	CGCG	1 cut(s)	204
BstKTI	GATC	3 cut(s)	142, 220, 225
BstMAI	GTCTC	4 cut(s)	85, 176, 212, 276
BstMBI	GATC	3 cut(s)	139, 217, 222
BstMWI	GCNNNNNNNGC	1 cut(s)	411
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	114
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
BtgI	CCRYGG	1 cut(s)	86
BtsIMutI	CAGTG	1 cut(s)	430
Cac8I	GCNNGC	2 cut(s)	403, 416
CciI	TCATGA	1 cut(s)	150
Cfr10I	RCCGGY	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	325
CsiI	ACCWGGT	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	3 cut(s)	151, 345, 362
CviJI	RGCY	5 cut(s)	23, 258, 385, 405, 414
CviKI_1	RGCY	5 cut(s)	23, 258, 385, 405, 414
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	2 cut(s)	31, 386
DpnI	GATC	3 cut(s)	141, 219, 224
DpnII	GATC	3 cut(s)	139, 217, 222
EciI	GGCGGA	1 cut(s)	346
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	325
Eco88I	CYCGRG	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	3 cut(s)	154, 348, 365
FaiI	YATR	5 cut(s)	152, 315, 346, 363, 425
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	3 cut(s)	150, 344, 361
Fnu4HI	GCNGC	1 cut(s)	256
Fsp4HI	GCNGC	1 cut(s)	256
GluI	GCNGC	1 cut(s)	256
HapII	CCGG	1 cut(s)	328
Hin1II	CATG	3 cut(s)	154, 348, 365
HpaII	CCGG	1 cut(s)	328
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	3 cut(s)	34, 106, 222
Hpy188III	TCNNGA	5 cut(s)	143, 151, 265, 267, 279
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	2 cut(s)	255, 348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	411
HpyF3I	CTNAG	2 cut(s)	31, 386
Hsp92II	CATG	3 cut(s)	154, 348, 365
Kzo9I	GATC	3 cut(s)	139, 217, 222
LmnI	GCTCC	1 cut(s)	375
LpnPI	CCDG	7 cut(s)	88, 101, 128, 156, 317, 341, 351
Lsp1109I	GCAGC	1 cut(s)	267
LweI	GCATC	1 cut(s)	399
MabI	ACCWGGT	1 cut(s)	114
MaeIII	GTNAC	2 cut(s)	155, 426
MalI	GATC	3 cut(s)	141, 219, 224
MboI	GATC	3 cut(s)	139, 217, 222
MflI	RGATCY	1 cut(s)	222
MluCI	AATT	2 cut(s)	100, 164
MnlI	CCTC	3 cut(s)	154, 314, 365
MspI	CCGG	1 cut(s)	328
MspR9I	CCNGG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	116
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	1 cut(s)	411
NdeII	GATC	3 cut(s)	139, 217, 222
NlaIII	CATG	3 cut(s)	154, 348, 365
NlaIV	GGNNCC	1 cut(s)	326
PaeR7I	CTCGAG	1 cut(s)	265
PagI	TCATGA	1 cut(s)	150
PctI	GAATGC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	326
PspPI	GGNCC	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	222
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	3 cut(s)	139, 217, 222
Sau96I	GGNCC	1 cut(s)	325
ScrFI	CCNGG	1 cut(s)	116
SetI	ASST	5 cut(s)	120, 181, 260, 357, 407
SexAI	ACCWGGT	1 cut(s)	114
SfaNI	GCATC	1 cut(s)	399
Sfr274I	CTCGAG	1 cut(s)	265
SinI	GGWCC	1 cut(s)	325
SlaI	CTCGAG	1 cut(s)	265
SmlI	CTYRAG	2 cut(s)	170, 265
SmoI	CTYRAG	2 cut(s)	170, 265
Sse9I	AATT	2 cut(s)	100, 164
SsiI	CCGC	2 cut(s)	204, 331
StyD4I	CCNGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	187
TaqI	TCGA	1 cut(s)	266
TasI	AATT	2 cut(s)	100, 164
TatI	WGTACW	1 cut(s)	246
TseI	GCWGC	1 cut(s)	255
TspDTI	ATGAA	1 cut(s)	24
TspGWI	ACGGA	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	325
XapI	RAATTY	1 cut(s)	100
XhoI	CTCGAG	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.