Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010546

Physical Location & Seq

Genomic Coordinates Reverse (-)

56597372 .. 56603556

Gene Structure 6185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG361800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAGTTGGAACCCGCATATGGGAGTTCATTACCCCTACAACAGCTGTCCCTATAGCACGGTGGGTAGCTTTATGGACTATGTTGAAGGCCTCACCTACGAACATGTGAACTTTATTTTTTCAGGGGATTCACATGCTCAGGAGAGCACTTACCCATCAATGAATACGAACTATTACAAGTTTGGGTTAACTGAACCTGGGAATACTTCATATTATGATCTTGGTTTTCGTCATTCCTATGAGTTCAATGATCCTATCTCAAGAAGTGGTGAAGAAACAAGGCCTTTGCAGTACTCTTCAACTATTCCTAATGAACAGAATGTGGCAAGGGATCCACCATGCGAAGGAAGTGCAAACACTTCCACATGTGACAACCCCAGAGAATCCCCTCGAAGATATCAGAACTCCCAGGATTATCAGGTTATTTTGGAAGACAACATTGACCCTGATAGCATGACTTACGAGGAATTACTAGAATTAGGTGAGGCAGTTGGAACTGAAAGCCGAGGTCTTACCCAAGATATGCTTTCTTTGCTTCCAATCTCGAAGTACAAGTGCAGCTTTTTCTCAAGAAAGAAATCACGGAGTGAGAGGTATAATTGCCCTTATTTATTGTTCTTTTGCGGAAATGTGATAACTCTCTCTCTCTCTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

218

Amino Acids

24.98

Weight (kDa)

4.77

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29040
malus_domestica	MD03G1178200.v1.1 MD11G1198000.v1.1
prunus_persica	Prupe.4G244600_v2.0.a1 Prupe.4G244600_v2.0.a1 Prupe.4G244600_v2.0.a1 Prupe.4G244600_v2.0.a1
pyrus_communis	pycom03g13490 pycom11g17140
rosa_chinensis	RchiOBHm_Chr5g0051621
rosa_laevigata	RLG00000034872
rosa_multiflora	Rmu_ssc0000089.1_g000034
rosa_roxburghii	Rroxscaffold_1G00027100
rosa_rugosa	Rorug05G0278700 Rorug05G0278800 Rorug05G0278900
rosa_samantha	Rh5AG350000 Rh5BG361800 Rh5CG386700 Rh5DG376700
rosa_wichuraiana	Rw5G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	14, 624
AclWI	GGATC	3 cut(s)	245, 326, 339
AdeI	CACNNNGTG	1 cut(s)	587
AfaI	GTAC	2 cut(s)	293, 551
AfiI	CCNNNNNNNGG	3 cut(s)	19, 20, 344
AflIII	ACRYGT	2 cut(s)	103, 365
AgsI	TTSAA	3 cut(s)	86, 247, 300
AjnI	CCWGG	2 cut(s)	196, 408
AluBI	AGCT	3 cut(s)	45, 69, 561
AluI	AGCT	3 cut(s)	45, 69, 561
Alw21I	GWGCWC	1 cut(s)	149
AlwI	GGATC	3 cut(s)	245, 326, 339
AoxI	GGCC	2 cut(s)	88, 281
ApeKI	GCWGC	1 cut(s)	558
AsuHPI	GGTGA	3 cut(s)	85, 281, 494
BamHI	GGATCC	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	570
BccI	CCATC	1 cut(s)	163
BcgI	CGANNNNNNTGC	2 cut(s)	332, 366
BciT130I	CCWGG	2 cut(s)	198, 410
BfaI	CTAG	1 cut(s)	473
BfmI	CTRYAG	1 cut(s)	52
BisI	GCNGC	1 cut(s)	559
BlsI	GCNGC	1 cut(s)	560
BmcAI	AGTACT	1 cut(s)	293
Bme1390I	CCNGG	2 cut(s)	198, 410
BmiI	GGNNCC	2 cut(s)	11, 333
BmrFI	CCNGG	2 cut(s)	198, 410
BpiI	GAAGAC	1 cut(s)	438
Bpu10I	CCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	2 cut(s)	244, 553
BsaJI	CCNNGG	3 cut(s)	197, 408, 505
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 20, 344
BseBI	CCWGG	2 cut(s)	198, 410
BseDI	CCNNGG	3 cut(s)	197, 408, 505
BseLI	CCNNNNNNNGG	3 cut(s)	19, 20, 344
BseMII	CTCAG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	570
BsgI	GTGCAG	1 cut(s)	577
BshFI	GGCC	2 cut(s)	90, 283
BsiHKAI	GWGCWC	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	3 cut(s)	19, 20, 344
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	2 cut(s)	90, 283
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	3 cut(s)	217, 250, 331
BspACI	CCGC	2 cut(s)	14, 624
BspANI	GGCC	2 cut(s)	90, 283
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	2 cut(s)	11, 333
BspPI	GGATC	3 cut(s)	245, 326, 339
BssECI	CCNNGG	3 cut(s)	197, 408, 505
BssMI	GATC	3 cut(s)	217, 250, 331
Bst2UI	CCWGG	2 cut(s)	198, 410
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	301
BstDEI	CTNAG	1 cut(s)	138
BstKTI	GATC	3 cut(s)	220, 253, 334
BstMBI	GATC	3 cut(s)	217, 250, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	532
BstNI	CCWGG	2 cut(s)	198, 410
BstNSI	RCATGY	3 cut(s)	107, 137, 369
BstSCI	CCNGG	2 cut(s)	196, 408
BstSFI	CTRYAG	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	570
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	90, 283
Csp6I	GTAC	2 cut(s)	292, 550
CviAII	CATG	5 cut(s)	104, 134, 339, 366, 454
CviJI	RGCY	6 cut(s)	45, 69, 90, 283, 504, 561
CviKI_1	RGCY	6 cut(s)	45, 69, 90, 283, 504, 561
CviQI	GTAC	2 cut(s)	292, 550
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	3 cut(s)	219, 252, 333
DpnII	GATC	3 cut(s)	217, 250, 331
DraIII	CACNNNGTG	1 cut(s)	587
Eam1104I	CTCTTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	301
Eco147I	AGGCCT	2 cut(s)	90, 283
Eco32I	GATATC	1 cut(s)	398
EcoRII	CCWGG	2 cut(s)	196, 408
EcoRV	GATATC	1 cut(s)	398
FaeI	CATG	5 cut(s)	107, 137, 342, 369, 457
FalI	AAGNNNNNCTT	4 cut(s)	510, 542, 545, 577
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	5 cut(s)	103, 133, 338, 365, 453
FauI	CCCGC	1 cut(s)	21
FauNDI	CATATG	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	559
Fsp4HI	GCNGC	1 cut(s)	559
FspBI	CTAG	1 cut(s)	473
GluI	GCNGC	1 cut(s)	559
HaeIII	GGCC	2 cut(s)	90, 283
Hin1II	CATG	5 cut(s)	107, 137, 342, 369, 457
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HinfI	GANTC	2 cut(s)	128, 383
HpaI	GTTAAC	1 cut(s)	189
HphI	GGTGA	3 cut(s)	85, 281, 494
Hpy166II	GTNNAC	2 cut(s)	109, 189
Hpy188I	TCNGA	1 cut(s)	402
Hpy188III	TCNNGA	4 cut(s)	140, 261, 544, 570
Hpy8I	GTNNAC	2 cut(s)	109, 189
HpyAV	CCTTC	2 cut(s)	80, 338
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	3 cut(s)	289, 353, 558
HpyF10VI	GCNNNNNNNGC	1 cut(s)	532
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	5 cut(s)	107, 137, 342, 369, 457
KspAI	GTTAAC	1 cut(s)	189
Kzo9I	GATC	3 cut(s)	217, 250, 331
LpnPI	CCDG	9 cut(s)	108, 125, 183, 210, 391, 395, 404, 422, 459
Lsp1109I	GCAGC	1 cut(s)	570
MaeI	CTAG	1 cut(s)	473
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	3 cut(s)	219, 252, 333
MboI	GATC	3 cut(s)	217, 250, 331
MboII	GAAGA	4 cut(s)	284, 288, 405, 443
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	149
MluCI	AATT	3 cut(s)	467, 476, 598
MmeI	TCCRAC	1 cut(s)	472
MnlI	CCTC	6 cut(s)	101, 399, 457, 478, 500, 585
MseI	TTAA	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	45
MspR9I	CCNGG	2 cut(s)	198, 410
MvaI	CCWGG	2 cut(s)	198, 410
MwoI	GCNNNNNNNGC	1 cut(s)	532
NdeI	CATATG	1 cut(s)	18
NdeII	GATC	3 cut(s)	217, 250, 331
NlaIII	CATG	5 cut(s)	107, 137, 342, 369, 457
NlaIV	GGNNCC	2 cut(s)	11, 333
NmeAIII	GCCGAG	1 cut(s)	530
NmuCI	GTSAC	1 cut(s)	368
NspI	RCATGY	3 cut(s)	107, 137, 369
PceI	AGGCCT	2 cut(s)	90, 283
PciI	ACATGT	2 cut(s)	103, 365
PfeI	GAWTC	2 cut(s)	128, 383
PkrI	GCNGC	1 cut(s)	560
PscI	ACATGT	2 cut(s)	103, 365
Psp6I	CCWGG	2 cut(s)	196, 408
PspGI	CCWGG	2 cut(s)	196, 408
PspN4I	GGNNCC	2 cut(s)	11, 333
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	45
RsaI	GTAC	2 cut(s)	293, 551
RsaNI	GTAC	2 cut(s)	292, 550
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	188
SatI	GCNGC	1 cut(s)	559
Sau3AI	GATC	3 cut(s)	217, 250, 331
ScaI	AGTACT	1 cut(s)	293
ScrFI	CCNGG	2 cut(s)	198, 410
SduI	GDGCHC	1 cut(s)	149
SetI	ASST	9 cut(s)	47, 71, 98, 199, 423, 484, 511, 563, 596
SfcI	CTRYAG	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	2 cut(s)	259, 568
SmoI	CTYRAG	2 cut(s)	259, 568
Sse9I	AATT	3 cut(s)	467, 476, 598
SseBI	AGGCCT	2 cut(s)	90, 283
SsiI	CCGC	2 cut(s)	14, 624
SspMI	CTAG	1 cut(s)	473
StuI	AGGCCT	2 cut(s)	90, 283
StyD4I	CCNGG	2 cut(s)	196, 408
TaaI	ACNGT	1 cut(s)	61
TaqI	TCGA	2 cut(s)	391, 545
TasI	AATT	3 cut(s)	467, 476, 598
TatI	WGTACW	2 cut(s)	291, 549
TfiI	GAWTC	2 cut(s)	128, 383
Tru1I	TTAA	1 cut(s)	188
Tru9I	TTAA	1 cut(s)	188
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	1 cut(s)	558
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	4 cut(s)	17, 176, 198, 327
TspGWI	ACGGA	1 cut(s)	598
XceI	RCATGY	3 cut(s)	107, 137, 369
XspI	CTAG	1 cut(s)	473
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.