Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010546

Physical Location & Seq

Genomic Coordinates Reverse (-)

31664069 .. 31664593

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0278700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCTTGGAGTACCGATGCAGCTGCCGGTTCTTCCCCATCTTCTTCGATCCCCATTTCATACAAATACGACGTGTTTCTGAATTTTAGAGGTGAAGACACGCGCACTACTTTTACAAGTCATTTGTACACAGCTTTGCGCAACAAAGGAATCAAGACCTTCATAGACAATGGGCTCAAAAGAGGGGAAGTAATATCTCGAGCACTTTTCAAAGCAATCAATGAGTCAAGGATATCTGTCATCGTGTTCTCTGAAAACTATGCAGCATCAACATGGTGTTTGGACGAACTTGTTGAGATCCTTGAATGTAGAGAATCAAAAGGACAGATGGTTAGGCCAATTTTTTACAAAGTGAAACCCTCTGATGTACGACACCTGAGAGGTACTTTTGGGGAGGCCCTTGCCCAACATGAACTGGATTTTAAGCATGATACCATAGCTGTGCGCAGATGGGGTGCAGCTCTTTCTGAAGCGGCGAATTTGTCCGGATGGCCCTGCATGGATCAGTATGTGCAACTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

174

Amino Acids

19.65

Weight (kDa)

7.73

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	22 - 165	1.5e-50	TIR domain
TIR_2	PF13676	25 - 120	6.9e-15	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010546)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g29040
malus_domestica	MD03G1178200.v1.1 MD11G1198000.v1.1
prunus_persica	Prupe.4G244600_v2.0.a1 Prupe.4G244600_v2.0.a1 Prupe.4G244600_v2.0.a1 Prupe.4G244600_v2.0.a1
pyrus_communis	pycom03g13490 pycom11g17140
rosa_chinensis	RchiOBHm_Chr5g0051621
rosa_laevigata	RLG00000034872
rosa_multiflora	Rmu_ssc0000089.1_g000034
rosa_roxburghii	Rroxscaffold_1G00027100
rosa_rugosa	Rorug05G0278700 Rorug05G0278800 Rorug05G0278900
rosa_samantha	Rh5AG350000 Rh5BG361800 Rh5CG386700 Rh5DG376700
rosa_wichuraiana	Rw5G033120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	140, 446
AccII	CGCG	1 cut(s)	103
AccIII	TCCGGA	1 cut(s)	485
AciI	CCGC	1 cut(s)	473
AclWI	GGATC	3 cut(s)	43, 292, 510
AcsI	RAATTY	2 cut(s)	82, 478
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	4 cut(s)	13, 128, 369, 385
AflIII	ACRYGT	1 cut(s)	72
AgsI	TTSAA	2 cut(s)	211, 305
AjiI	CACGTC	1 cut(s)	73
AluBI	AGCT	4 cut(s)	23, 134, 440, 461
AluI	AGCT	4 cut(s)	23, 134, 440, 461
Alw21I	GWGCWC	1 cut(s)	205
AlwI	GGATC	3 cut(s)	43, 292, 510
Ama87I	CYCGRG	1 cut(s)	198
Aor13HI	TCCGGA	1 cut(s)	485
AoxI	GGCC	3 cut(s)	335, 396, 491
ApeKI	GCWGC	4 cut(s)	20, 23, 263, 458
ApoI	RAATTY	2 cut(s)	82, 478
AspLEI	GCGC	3 cut(s)	105, 141, 447
AspS9I	GGNCC	2 cut(s)	397, 492
AsuHPI	GGTGA	1 cut(s)	104
AvaI	CYCGRG	1 cut(s)	198
BanII	GRGCYC	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	4 cut(s)	10, 32, 275, 470
BccI	CCATC	4 cut(s)	46, 322, 444, 483
BcgI	CGANNNNNNTGC	2 cut(s)	5, 39
BisI	GCNGC	5 cut(s)	21, 24, 264, 459, 474
BlsI	GCNGC	5 cut(s)	22, 25, 265, 460, 475
BmeT110I	CYCGRG	1 cut(s)	198
BmgBI	CACGTC	1 cut(s)	73
BmgT120I	GGNCC	2 cut(s)	397, 492
BmsI	GCATC	2 cut(s)	7, 275
BpiI	GAAGAC	1 cut(s)	102
BsaWI	WCCGGW	1 cut(s)	485
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	420
BseAI	TCCGGA	1 cut(s)	485
BseGI	GGATG	1 cut(s)	494
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	1 cut(s)	420
BseXI	GCAGC	4 cut(s)	10, 32, 275, 470
BsgI	GTGCAG	1 cut(s)	477
Bsh1236I	CGCG	1 cut(s)	103
BshFI	GGCC	3 cut(s)	337, 398, 493
BsiHKAI	GWGCWC	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	198
BsiSI	CCGG	2 cut(s)	27, 486
BsnI	GGCC	3 cut(s)	337, 398, 493
BsoBI	CYCGRG	1 cut(s)	198
Bsp1286I	GDGCHC	2 cut(s)	177, 205
Bsp13I	TCCGGA	1 cut(s)	485
Bsp1407I	TGTACA	1 cut(s)	126
Bsp143I	GATC	3 cut(s)	48, 297, 502
BspACI	CCGC	1 cut(s)	473
BspANI	GGCC	3 cut(s)	337, 398, 493
BspCNI	CTCAG	1 cut(s)	369
BspEI	TCCGGA	1 cut(s)	485
BspFNI	CGCG	1 cut(s)	103
BspPI	GGATC	3 cut(s)	43, 292, 510
BsrFI	RCCGGY	1 cut(s)	26
BsrGI	TGTACA	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	420
BssAI	RCCGGY	1 cut(s)	26
BssMI	GATC	3 cut(s)	48, 297, 502
BstAUI	TGTACA	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	377
BstF5I	GGATG	1 cut(s)	494
BstFNI	CGCG	1 cut(s)	103
BstHHI	GCGC	3 cut(s)	105, 141, 447
BstKTI	GATC	3 cut(s)	51, 300, 505
BstMBI	GATC	3 cut(s)	48, 297, 502
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	4 cut(s)	10, 32, 275, 470
BstV2I	GAAGAC	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	297
BstYI	RGATCY	1 cut(s)	297
BsuRI	GGCC	3 cut(s)	337, 398, 493
BtrI	CACGTC	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	494
CfoI	GCGC	3 cut(s)	105, 141, 447
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	2 cut(s)	397, 492
Csp6I	GTAC	4 cut(s)	12, 127, 368, 384
CviAII	CATG	4 cut(s)	273, 410, 428, 499
CviJI	RGCY	9 cut(s)	5, 23, 134, 175, 337, 398, 440, 461, 493
CviKI_1	RGCY	9 cut(s)	5, 23, 134, 175, 337, 398, 440, 461, 493
CviQI	GTAC	4 cut(s)	12, 127, 368, 384
DdeI	CTNAG	1 cut(s)	377
DpnI	GATC	3 cut(s)	50, 299, 504
DpnII	GATC	3 cut(s)	48, 297, 502
Eco24I	GRGCYC	1 cut(s)	177
Eco32I	GATATC	1 cut(s)	234
Eco57I	CTGAAG	1 cut(s)	489
Eco88I	CYCGRG	1 cut(s)	198
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRV	GATATC	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	177
FaeI	CATG	4 cut(s)	276, 413, 431, 502
FaiI	YATR	9 cut(s)	61, 164, 261, 274, 411, 429, 437, 500, 510
FatI	CATG	4 cut(s)	272, 409, 427, 498
Fnu4HI	GCNGC	5 cut(s)	21, 24, 264, 459, 474
FokI	GGATG	1 cut(s)	501
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	5 cut(s)	21, 24, 264, 459, 474
FspI	TGCGCA	2 cut(s)	140, 446
GlaI	GCGC	3 cut(s)	104, 140, 446
GluI	GCNGC	5 cut(s)	21, 24, 264, 459, 474
HaeIII	GGCC	3 cut(s)	337, 398, 493
HapII	CCGG	2 cut(s)	27, 486
HhaI	GCGC	3 cut(s)	105, 141, 447
Hin1II	CATG	4 cut(s)	276, 413, 431, 502
Hin6I	GCGC	3 cut(s)	103, 139, 445
HinP1I	GCGC	3 cut(s)	103, 139, 445
HinfI	GANTC	3 cut(s)	150, 224, 314
HpaII	CCGG	2 cut(s)	27, 486
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	4 cut(s)	81, 253, 364, 469
Hpy188III	TCNNGA	3 cut(s)	154, 198, 486
Hpy8I	GTNNAC	1 cut(s)	129
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	169
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	5 cut(s)	20, 263, 458, 498, 514
HpyF3I	CTNAG	1 cut(s)	377
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	4 cut(s)	276, 413, 431, 502
HspAI	GCGC	3 cut(s)	103, 139, 445
Kpn2I	TCCGGA	1 cut(s)	485
Kzo9I	GATC	3 cut(s)	48, 297, 502
LpnPI	CCDG	5 cut(s)	40, 389, 401, 499, 508
Lsp1109I	GCAGC	4 cut(s)	10, 32, 275, 470
LweI	GCATC	2 cut(s)	7, 275
MaeII	ACGT	1 cut(s)	72
MalI	GATC	3 cut(s)	50, 299, 504
MboI	GATC	3 cut(s)	48, 297, 502
MboII	GAAGA	4 cut(s)	24, 33, 36, 107
MflI	RGATCY	1 cut(s)	297
MhlI	GDGCHC	2 cut(s)	177, 205
MluCI	AATT	3 cut(s)	82, 339, 478
MlyI	GAGTC	1 cut(s)	233
MnlI	CCTC	5 cut(s)	83, 176, 370, 374, 388
MroI	TCCGGA	1 cut(s)	485
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	2 cut(s)	271, 440
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	2 cut(s)	27, 486
MvnI	CGCG	1 cut(s)	103
NdeII	GATC	3 cut(s)	48, 297, 502
NlaIII	CATG	4 cut(s)	276, 413, 431, 502
NsbI	TGCGCA	2 cut(s)	140, 446
PaeR7I	CTCGAG	1 cut(s)	198
PfeI	GAWTC	2 cut(s)	150, 314
PkrI	GCNGC	5 cut(s)	22, 25, 265, 460, 475
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
PspPI	GGNCC	2 cut(s)	397, 492
PsuI	RGATCY	1 cut(s)	297
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	4 cut(s)	13, 128, 369, 385
RsaNI	GTAC	4 cut(s)	12, 127, 368, 384
RseI	CAYNNNNRTG	2 cut(s)	271, 440
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	5 cut(s)	21, 24, 264, 459, 474
Sau3AI	GATC	3 cut(s)	48, 297, 502
Sau96I	GGNCC	2 cut(s)	397, 492
SchI	GAGTC	1 cut(s)	233
SduI	GDGCHC	2 cut(s)	177, 205
SetI	ASST	9 cut(s)	25, 75, 94, 136, 161, 378, 385, 442, 463
SfaNI	GCATC	2 cut(s)	7, 275
Sfr274I	CTCGAG	1 cut(s)	198
SlaI	CTCGAG	1 cut(s)	198
SmiMI	CAYNNNNRTG	2 cut(s)	271, 440
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
Sse9I	AATT	3 cut(s)	82, 339, 478
SsiI	CCGC	1 cut(s)	473
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	2 cut(s)	47, 199
TasI	AATT	3 cut(s)	82, 339, 478
TatI	WGTACW	1 cut(s)	126
TauI	GCSGC	1 cut(s)	476
TfiI	GAWTC	2 cut(s)	150, 314
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TseI	GCWGC	4 cut(s)	20, 23, 263, 458
TspDTI	ATGAA	3 cut(s)	48, 151, 426
XapI	RAATTY	2 cut(s)	82, 478
XhoI	CTCGAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.