RNA pseudourine synthase 3
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1178 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 703, 1157 |
| AccI | GTMKAC | 1 cut(s) | 414 |
| AccII | CGCG | 3 cut(s) | 21, 232, 234 |
| AciI | CCGC | 8 cut(s) | 19, 31, 71, 92, 173, 219, 240, 1177 |
| AclWI | GGATC | 1 cut(s) | 1302 |
| AcoI | YGGCCR | 4 cut(s) | 39, 117, 184, 1016 |
| AcuI | CTGAAG | 1 cut(s) | 1080 |
| AcvI | CACGTG | 2 cut(s) | 37, 115 |
| AcyI | GRCGYC | 1 cut(s) | 222 |
| AfaI | GTAC | 7 cut(s) | 420, 485, 530, 818, 1097, 1110, 1260 |
| AgeI | ACCGGT | 1 cut(s) | 421 |
| AgsI | TTSAA | 6 cut(s) | 304, 344, 450, 757, 1010, 1332 |
| AjnI | CCWGG | 4 cut(s) | 41, 119, 152, 331 |
| AleI | CACNNNNGTG | 1 cut(s) | 20 |
| AluBI | AGCT | 6 cut(s) | 160, 803, 944, 1042, 1255, 1386 |
| AluI | AGCT | 6 cut(s) | 160, 803, 944, 1042, 1255, 1386 |
| Alw21I | GWGCWC | 2 cut(s) | 17, 871 |
| AlwI | GGATC | 1 cut(s) | 1302 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 163 |
| ApaI | GGGCCC | 1 cut(s) | 131 |
| ApeKI | GCWGC | 5 cut(s) | 157, 620, 623, 626, 1162 |
| AsiGI | ACCGGT | 1 cut(s) | 421 |
| AspLEI | GCGC | 2 cut(s) | 86, 234 |
| AspS9I | GGNCC | 6 cut(s) | 89, 127, 128, 143, 653, 980 |
| AsuC2I | CCSGG | 3 cut(s) | 101, 183, 198 |
| AsuHPI | GGTGA | 1 cut(s) | 229 |
| AsuII | TTCGAA | 1 cut(s) | 878 |
| AvaII | GGWCC | 2 cut(s) | 89, 653 |
| AxyI | CCTNAGG | 1 cut(s) | 843 |
| BaeGI | GKGCMC | 1 cut(s) | 131 |
| BalI | TGGCCA | 2 cut(s) | 41, 119 |
| BanII | GRGCYC | 1 cut(s) | 131 |
| BauI | CACGAG | 1 cut(s) | 57 |
| BbrPI | CACGTG | 2 cut(s) | 37, 115 |
| BbsI | GAAGAC | 1 cut(s) | 908 |
| Bbv12I | GWGCWC | 2 cut(s) | 17, 871 |
| BbvI | GCAGC | 5 cut(s) | 169, 632, 635, 638, 1149 |
| BccI | CCATC | 4 cut(s) | 263, 296, 316, 1113 |
| BceAI | ACGGC | 2 cut(s) | 227, 1031 |
| BciT130I | CCWGG | 4 cut(s) | 43, 121, 154, 333 |
| BcnI | CCSGG | 3 cut(s) | 101, 183, 198 |
| BfaI | CTAG | 3 cut(s) | 384, 804, 1026 |
| BfmI | CTRYAG | 2 cut(s) | 1246, 1320 |
| BfoI | RGCGCY | 1 cut(s) | 87 |
| BfuAI | ACCTGC | 1 cut(s) | 1178 |
| BisI | GCNGC | 8 cut(s) | 31, 158, 173, 220, 621, 624, 627, 1163 |
| BlsI | GCNGC | 8 cut(s) | 32, 159, 174, 221, 622, 625, 628, 1164 |
| Bme1390I | CCNGG | 7 cut(s) | 43, 101, 121, 154, 183, 198, 333 |
| Bme18I | GGWCC | 2 cut(s) | 89, 653 |
| BmgT120I | GGNCC | 6 cut(s) | 89, 127, 128, 143, 653, 980 |
| BmiI | GGNNCC | 2 cut(s) | 129, 982 |
| BmrFI | CCNGG | 7 cut(s) | 43, 101, 121, 154, 183, 198, 333 |
| BmrI | ACTGGG | 1 cut(s) | 829 |
| BmsI | GCATC | 6 cut(s) | 601, 781, 986, 1045, 1353, 1367 |
| BmuI | ACTGGG | 1 cut(s) | 829 |
| BpiI | GAAGAC | 1 cut(s) | 908 |
| Bpu14I | TTCGAA | 1 cut(s) | 878 |
| BpuMI | CCSGG | 3 cut(s) | 101, 183, 198 |
| Bsa29I | ATCGAT | 1 cut(s) | 1361 |
| BsaAI | YACGTR | 3 cut(s) | 37, 115, 418 |
| BsaHI | GRCGYC | 1 cut(s) | 222 |
| BsaJI | CCNNGG | 5 cut(s) | 152, 181, 197, 331, 1066 |
| BsaWI | WCCGGW | 2 cut(s) | 421, 1113 |
| Bse118I | RCCGGY | 3 cut(s) | 73, 421, 574 |
| Bse1I | ACTGG | 3 cut(s) | 292, 593, 824 |
| Bse21I | CCTNAGG | 1 cut(s) | 843 |
| Bse3DI | GCAATG | 1 cut(s) | 743 |
| BseBI | CCWGG | 4 cut(s) | 43, 121, 154, 333 |
| BseCI | ATCGAT | 1 cut(s) | 1361 |
| BseDI | CCNNGG | 5 cut(s) | 152, 181, 197, 331, 1066 |
| BseGI | GGATG | 5 cut(s) | 288, 616, 793, 1001, 1201 |
| BseMI | GCAATG | 1 cut(s) | 743 |
| BseNI | ACTGG | 3 cut(s) | 292, 593, 824 |
| BseRI | GAGGAG | 1 cut(s) | 861 |
| BseSI | GKGCMC | 1 cut(s) | 131 |
| BseXI | GCAGC | 5 cut(s) | 169, 632, 635, 638, 1149 |
| BsgI | GTGCAG | 2 cut(s) | 1220, 1298 |
| Bsh1236I | CGCG | 3 cut(s) | 21, 232, 234 |
| BshTI | ACCGGT | 1 cut(s) | 421 |
| BshVI | ATCGAT | 1 cut(s) | 1361 |
| BsiHKAI | GWGCWC | 2 cut(s) | 17, 871 |
| BsiSI | CCGG | 9 cut(s) | 74, 87, 100, 183, 197, 422, 575, 1030, 1114 |
| BslFI | GGGAC | 2 cut(s) | 280, 1211 |
| BsmFI | GGGAC | 2 cut(s) | 280, 1211 |
| BsmI | GAATGC | 1 cut(s) | 332 |
| Bsp119I | TTCGAA | 1 cut(s) | 878 |
| Bsp120I | GGGCCC | 1 cut(s) | 127 |
| Bsp1286I | GDGCHC | 3 cut(s) | 17, 131, 871 |
| Bsp1407I | TGTACA | 1 cut(s) | 1108 |
| Bsp143I | GATC | 1 cut(s) | 1294 |
| BspACI | CCGC | 8 cut(s) | 19, 31, 71, 92, 173, 219, 240, 1177 |
| BspDI | ATCGAT | 1 cut(s) | 1361 |
| BspFNI | CGCG | 3 cut(s) | 21, 232, 234 |
| BspLI | GGNNCC | 2 cut(s) | 129, 982 |
| BspMAI | CTGCAG | 1 cut(s) | 1324 |
| BspMI | ACCTGC | 1 cut(s) | 1178 |
| BspPI | GGATC | 1 cut(s) | 1302 |
| BspT104I | TTCGAA | 1 cut(s) | 878 |
| BsrDI | GCAATG | 1 cut(s) | 743 |
| BsrFI | RCCGGY | 3 cut(s) | 73, 421, 574 |
| BsrGI | TGTACA | 1 cut(s) | 1108 |
| BsrI | ACTGG | 3 cut(s) | 292, 593, 824 |
| BssAI | RCCGGY | 3 cut(s) | 73, 421, 574 |
| BssECI | CCNNGG | 5 cut(s) | 152, 181, 197, 331, 1066 |
| BssMI | GATC | 1 cut(s) | 1294 |
| BssNAI | GTATAC | 1 cut(s) | 415 |
| BssNI | GRCGYC | 1 cut(s) | 222 |
| BssSI | CACGAG | 1 cut(s) | 57 |
| Bst1107I | GTATAC | 1 cut(s) | 415 |
| Bst2BI | CACGAG | 1 cut(s) | 57 |
| Bst2UI | CCWGG | 4 cut(s) | 43, 121, 154, 333 |
| Bst4CI | ACNGT | 1 cut(s) | 1247 |
| Bst6I | CTCTTC | 2 cut(s) | 197, 735 |
| BstACI | GRCGYC | 1 cut(s) | 222 |
| BstAUI | TGTACA | 1 cut(s) | 1108 |
| BstBAI | YACGTR | 3 cut(s) | 37, 115, 418 |
| BstBI | TTCGAA | 1 cut(s) | 878 |
| BstC8I | GCNNGC | 4 cut(s) | 23, 75, 1185, 1313 |
| BstDEI | CTNAG | 4 cut(s) | 657, 843, 1275, 1408 |
| BstF5I | GGATG | 5 cut(s) | 288, 616, 793, 1001, 1201 |
| BstFNI | CGCG | 3 cut(s) | 21, 232, 234 |
| BstH2I | RGCGCY | 1 cut(s) | 87 |
| BstHHI | GCGC | 2 cut(s) | 86, 234 |
| BstKTI | GATC | 1 cut(s) | 1297 |
| BstMBI | GATC | 1 cut(s) | 1294 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 27, 83, 157, 559, 620, 626, 800 |
| BstNI | CCWGG | 4 cut(s) | 43, 121, 154, 333 |
| BstNSI | RCATGY | 1 cut(s) | 798 |
| BstSCI | CCNGG | 7 cut(s) | 41, 99, 119, 152, 181, 196, 331 |
| BstSFI | CTRYAG | 2 cut(s) | 1246, 1320 |
| BstSLI | GKGCMC | 1 cut(s) | 131 |
| BstSNI | TACGTA | 1 cut(s) | 418 |
| BstUI | CGCG | 3 cut(s) | 21, 232, 234 |
| BstV1I | GCAGC | 5 cut(s) | 169, 632, 635, 638, 1149 |
| BstV2I | GAAGAC | 1 cut(s) | 908 |
| BstZ17I | GTATAC | 1 cut(s) | 415 |
| Bsu15I | ATCGAT | 1 cut(s) | 1361 |
| Bsu36I | CCTNAGG | 1 cut(s) | 843 |
| BsuTUI | ATCGAT | 1 cut(s) | 1361 |
| BtsCI | GGATG | 5 cut(s) | 288, 616, 793, 1001, 1201 |
| BtsI | GCAGTG | 1 cut(s) | 694 |
| BtsIMutI | CAGTG | 2 cut(s) | 694, 1243 |
| BveI | ACCTGC | 1 cut(s) | 1178 |
| Cac8I | GCNNGC | 4 cut(s) | 23, 75, 1185, 1313 |
| CaiI | CAGNNNCTG | 1 cut(s) | 163 |
| CfoI | GCGC | 2 cut(s) | 86, 234 |
| Cfr10I | RCCGGY | 3 cut(s) | 73, 421, 574 |
| Cfr13I | GGNCC | 6 cut(s) | 89, 127, 128, 143, 653, 980 |
| ClaI | ATCGAT | 1 cut(s) | 1361 |
| CpoI | CGGWCCG | 1 cut(s) | 89 |
| CseI | GACGC | 2 cut(s) | 211, 223 |
| Csp6I | GTAC | 7 cut(s) | 419, 484, 529, 817, 1096, 1109, 1259 |
| CspAI | ACCGGT | 1 cut(s) | 421 |
| CspI | CGGWCCG | 1 cut(s) | 89 |
| CviAII | CATG | 8 cut(s) | 212, 367, 394, 607, 795, 1002, 1375, 1396 |
| CviQI | GTAC | 7 cut(s) | 419, 484, 529, 817, 1096, 1109, 1259 |
| DdeI | CTNAG | 4 cut(s) | 657, 843, 1275, 1408 |
| DpnI | GATC | 1 cut(s) | 1296 |
| DpnII | GATC | 1 cut(s) | 1294 |
| EaeI | YGGCCR | 4 cut(s) | 39, 117, 184, 1016 |
| Eam1104I | CTCTTC | 2 cut(s) | 197, 735 |
| EarI | CTCTTC | 2 cut(s) | 197, 735 |
| EciI | GGCGGA | 1 cut(s) | 60 |
| Eco105I | TACGTA | 1 cut(s) | 418 |
| Eco147I | AGGCCT | 2 cut(s) | 312, 382 |
| Eco24I | GRGCYC | 1 cut(s) | 131 |
| Eco32I | GATATC | 2 cut(s) | 809, 1342 |
| Eco47I | GGWCC | 2 cut(s) | 89, 653 |
| Eco57I | CTGAAG | 1 cut(s) | 1080 |
| Eco72I | CACGTG | 2 cut(s) | 37, 115 |
| Eco81I | CCTNAGG | 1 cut(s) | 843 |
| EcoO109I | RGGNCCY | 1 cut(s) | 653 |
| EcoRII | CCWGG | 4 cut(s) | 41, 119, 152, 331 |
| EcoRV | GATATC | 2 cut(s) | 809, 1342 |
| EcoT22I | ATGCAT | 2 cut(s) | 616, 796 |
| EcoT38I | GRGCYC | 1 cut(s) | 131 |
| FaeI | CATG | 8 cut(s) | 215, 370, 397, 610, 798, 1005, 1378, 1399 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 248, 280, 842, 874 |
| FaqI | GGGAC | 2 cut(s) | 280, 1211 |
| FatI | CATG | 8 cut(s) | 211, 366, 393, 606, 794, 1001, 1374, 1395 |
| FauI | CCCGC | 1 cut(s) | 26 |
| FblI | GTMKAC | 1 cut(s) | 414 |
| Fnu4HI | GCNGC | 8 cut(s) | 31, 158, 173, 220, 621, 624, 627, 1163 |
| FokI | GGATG | 5 cut(s) | 275, 623, 800, 1008, 1208 |
| FriOI | GRGCYC | 1 cut(s) | 131 |
| Fsp4HI | GCNGC | 8 cut(s) | 31, 158, 173, 220, 621, 624, 627, 1163 |
| FspBI | CTAG | 3 cut(s) | 384, 804, 1026 |
| GlaI | GCGC | 2 cut(s) | 85, 233 |
| GluI | GCNGC | 8 cut(s) | 31, 158, 173, 220, 621, 624, 627, 1163 |
| HaeII | RGCGCY | 1 cut(s) | 87 |
| HapII | CCGG | 9 cut(s) | 74, 87, 100, 183, 197, 422, 575, 1030, 1114 |
| HgaI | GACGC | 2 cut(s) | 211, 223 |
| HhaI | GCGC | 2 cut(s) | 86, 234 |
| Hin1I | GRCGYC | 1 cut(s) | 222 |
| Hin1II | CATG | 8 cut(s) | 215, 370, 397, 610, 798, 1005, 1378, 1399 |
| Hin6I | GCGC | 2 cut(s) | 84, 232 |
| HinP1I | GCGC | 2 cut(s) | 84, 232 |
| HindIII | AAGCTT | 1 cut(s) | 942 |
| HinfI | GANTC | 4 cut(s) | 109, 281, 536, 1390 |
| HpaII | CCGG | 9 cut(s) | 74, 87, 100, 183, 197, 422, 575, 1030, 1114 |
| HphI | GGTGA | 1 cut(s) | 229 |
| Hpy166II | GTNNAC | 2 cut(s) | 415, 1111 |
| Hpy188I | TCNGA | 4 cut(s) | 321, 813, 1070, 1299 |
| Hpy188III | TCNNGA | 4 cut(s) | 890, 933, 1193, 1264 |
| Hpy8I | GTNNAC | 2 cut(s) | 415, 1111 |
| Hpy99I | CGWCG | 1 cut(s) | 227 |
| HpyCH4III | ACNGT | 1 cut(s) | 1247 |
| HpyCH4IV | ACGT | 4 cut(s) | 36, 114, 417, 1137 |
| HpyCH4V | TGCA | 9 cut(s) | 465, 514, 614, 736, 794, 1201, 1243, 1315, 1322 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 27, 83, 157, 559, 620, 626, 800 |
| HpyF3I | CTNAG | 4 cut(s) | 657, 843, 1275, 1408 |
| HpySE526I | ACGT | 4 cut(s) | 36, 114, 417, 1137 |
| Hsp92I | GRCGYC | 1 cut(s) | 222 |
| Hsp92II | CATG | 8 cut(s) | 215, 370, 397, 610, 798, 1005, 1378, 1399 |
| HspAI | GCGC | 2 cut(s) | 84, 232 |
| KroI | GCCGGC | 1 cut(s) | 73 |
| KroNI | GCCGGC | 1 cut(s) | 75 |
| Kzo9I | GATC | 1 cut(s) | 1294 |
| LmnI | GCTCC | 4 cut(s) | 12, 165, 874, 1047 |
| Lsp1109I | GCAGC | 5 cut(s) | 169, 632, 635, 638, 1149 |
| LweI | GCATC | 6 cut(s) | 601, 781, 986, 1045, 1353, 1367 |
| MaeI | CTAG | 3 cut(s) | 384, 804, 1026 |
| MaeII | ACGT | 4 cut(s) | 36, 114, 417, 1137 |
| MaeIII | GTNAC | 2 cut(s) | 235, 1233 |
| MalI | GATC | 1 cut(s) | 1296 |
| MboI | GATC | 1 cut(s) | 1294 |
| MboII | GAAGA | 3 cut(s) | 214, 722, 913 |
| MfeI | CAATTG | 1 cut(s) | 1077 |
| MhlI | GDGCHC | 3 cut(s) | 17, 131, 871 |
| MlsI | TGGCCA | 2 cut(s) | 41, 119 |
| MluCI | AATT | 5 cut(s) | 569, 861, 1010, 1077, 1380 |
| MluNI | TGGCCA | 2 cut(s) | 41, 119 |
| MlyI | GAGTC | 2 cut(s) | 275, 530 |
| Mox20I | TGGCCA | 2 cut(s) | 41, 119 |
| Mph1103I | ATGCAT | 2 cut(s) | 616, 796 |
| MreI | CGCCGGCG | 1 cut(s) | 73 |
| MroNI | GCCGGC | 1 cut(s) | 73 |
| MscI | TGGCCA | 2 cut(s) | 41, 119 |
| MseI | TTAA | 2 cut(s) | 701, 860 |
| MslI | CAYNNNNRTG | 3 cut(s) | 20, 548, 1140 |
| Msp20I | TGGCCA | 2 cut(s) | 41, 119 |
| MspI | CCGG | 9 cut(s) | 74, 87, 100, 183, 197, 422, 575, 1030, 1114 |
| MspR9I | CCNGG | 7 cut(s) | 43, 101, 121, 154, 183, 198, 333 |
| MunI | CAATTG | 1 cut(s) | 1077 |
| Mva1269I | GAATGC | 1 cut(s) | 332 |
| MvaI | CCWGG | 4 cut(s) | 43, 121, 154, 333 |
| MvnI | CGCG | 3 cut(s) | 21, 232, 234 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 27, 83, 157, 559, 620, 626, 800 |
| NaeI | GCCGGC | 1 cut(s) | 75 |
| NciI | CCSGG | 3 cut(s) | 101, 183, 198 |
| NdeII | GATC | 1 cut(s) | 1294 |
| NgoMIV | GCCGGC | 1 cut(s) | 73 |
| NlaIII | CATG | 8 cut(s) | 215, 370, 397, 610, 798, 1005, 1378, 1399 |
| NlaIV | GGNNCC | 2 cut(s) | 129, 982 |
| NmuCI | GTSAC | 1 cut(s) | 235 |
| NsiI | ATGCAT | 2 cut(s) | 616, 796 |
| NspI | RCATGY | 1 cut(s) | 798 |
| NspV | TTCGAA | 1 cut(s) | 878 |
| OliI | CACNNNNGTG | 1 cut(s) | 20 |
| PceI | AGGCCT | 2 cut(s) | 312, 382 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 231 |
| PctI | GAATGC | 1 cut(s) | 332 |
| PdiI | GCCGGC | 1 cut(s) | 75 |
| PfeI | GAWTC | 2 cut(s) | 109, 1390 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 703, 1157 |
| PinAI | ACCGGT | 1 cut(s) | 421 |
| PkrI | GCNGC | 8 cut(s) | 32, 159, 174, 221, 622, 625, 628, 1164 |
| PleI | GAGTC | 2 cut(s) | 275, 530 |
| PmaCI | CACGTG | 2 cut(s) | 37, 115 |
| PmlI | CACGTG | 2 cut(s) | 37, 115 |
| PpsI | GAGTC | 2 cut(s) | 275, 530 |
| Ppu21I | YACGTR | 3 cut(s) | 37, 115, 418 |
| PpuMI | RGGWCCY | 1 cut(s) | 653 |
| Psp5II | RGGWCCY | 1 cut(s) | 653 |
| Psp6I | CCWGG | 4 cut(s) | 41, 119, 152, 331 |
| PspCI | CACGTG | 2 cut(s) | 37, 115 |
| PspGI | CCWGG | 4 cut(s) | 41, 119, 152, 331 |
| PspN4I | GGNNCC | 2 cut(s) | 129, 982 |
| PspOMI | GGGCCC | 1 cut(s) | 127 |
| PspPI | GGNCC | 6 cut(s) | 89, 127, 128, 143, 653, 980 |
| PspPPI | RGGWCCY | 1 cut(s) | 653 |
| PstI | CTGCAG | 1 cut(s) | 1324 |
| PstNI | CAGNNNCTG | 1 cut(s) | 163 |
| RsaI | GTAC | 7 cut(s) | 420, 485, 530, 818, 1097, 1110, 1260 |
| RsaNI | GTAC | 7 cut(s) | 419, 484, 529, 817, 1096, 1109, 1259 |
| RseI | CAYNNNNRTG | 3 cut(s) | 20, 548, 1140 |
| Rsr2I | CGGWCCG | 1 cut(s) | 89 |
| RsrII | CGGWCCG | 1 cut(s) | 89 |
| SaqAI | TTAA | 2 cut(s) | 701, 860 |
| SatI | GCNGC | 8 cut(s) | 31, 158, 173, 220, 621, 624, 627, 1163 |
| Sau3AI | GATC | 1 cut(s) | 1294 |
| Sau96I | GGNCC | 6 cut(s) | 89, 127, 128, 143, 653, 980 |
| SchI | GAGTC | 2 cut(s) | 275, 530 |
| ScrFI | CCNGG | 7 cut(s) | 43, 101, 121, 154, 183, 198, 333 |
| SduI | GDGCHC | 3 cut(s) | 17, 131, 871 |
| SfaNI | GCATC | 6 cut(s) | 601, 781, 986, 1045, 1353, 1367 |
| SfcI | CTRYAG | 2 cut(s) | 1246, 1320 |
| SfuI | TTCGAA | 1 cut(s) | 878 |
| SgrAI | CRCCGGYG | 1 cut(s) | 73 |
| SinI | GGWCC | 2 cut(s) | 89, 653 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 20, 548, 1140 |
| SnaBI | TACGTA | 1 cut(s) | 418 |
| Sse9I | AATT | 5 cut(s) | 569, 861, 1010, 1077, 1380 |
| SseBI | AGGCCT | 2 cut(s) | 312, 382 |
| SsiI | CCGC | 8 cut(s) | 19, 31, 71, 92, 173, 219, 240, 1177 |
| SspI | AATATT | 2 cut(s) | 53, 1270 |
| SspMI | CTAG | 3 cut(s) | 384, 804, 1026 |
| StuI | AGGCCT | 2 cut(s) | 312, 382 |
| StyD4I | CCNGG | 7 cut(s) | 41, 99, 119, 152, 181, 196, 331 |
| TaaI | ACNGT | 1 cut(s) | 1247 |
| TaiI | ACGT | 4 cut(s) | 39, 117, 420, 1140 |
| TaqI | TCGA | 5 cut(s) | 107, 267, 878, 1220, 1361 |
| TasI | AATT | 5 cut(s) | 569, 861, 1010, 1077, 1380 |
| TatI | WGTACW | 3 cut(s) | 528, 1108, 1258 |
| TauI | GCSGC | 3 cut(s) | 33, 175, 222 |
| TfiI | GAWTC | 2 cut(s) | 109, 1390 |
| Tru1I | TTAA | 2 cut(s) | 701, 860 |
| Tru9I | TTAA | 2 cut(s) | 701, 860 |
| TscAI | CASTG | 2 cut(s) | 694, 1250 |
| TseFI | GTSAC | 1 cut(s) | 235 |
| TseI | GCWGC | 5 cut(s) | 157, 620, 623, 626, 1162 |
| Tsp45I | GTSAC | 1 cut(s) | 235 |
| TspDTI | ATGAA | 5 cut(s) | 228, 374, 587, 656, 1391 |
| TspGWI | ACGGA | 1 cut(s) | 1034 |
| TspRI | CASTG | 2 cut(s) | 694, 1250 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 703, 1157 |
| VpaK11BI | GGWCC | 2 cut(s) | 89, 653 |
| XceI | RCATGY | 1 cut(s) | 798 |
| XmiI | GTMKAC | 1 cut(s) | 414 |
| XspI | CTAG | 3 cut(s) | 384, 804, 1026 |
| Zsp2I | ATGCAT | 2 cut(s) | 616, 796 |