Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001833

Physical Location & Seq

Genomic Coordinates Reverse (-)

58895971 .. 58898237

Gene Structure 2267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG399000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGCGGAGAAGAATCATCCGCTTCTGCCACGTGTCACTCTGTACTCGCCAATACTCTAGCTCATCGGAAATCGCCGGACCGCCGCCGCTCATCCGAGTATCGAACCACGTGGCCAAATTGGGCCCACCGAAGGAAGGCCCGAAGCCCAGGCAGCTACTCTCCTTGCCGCCTTTTCCCGGTCGACATTTGCCGGGGAAGAAGAAGTCATACCAAGACGGCGTCGTTTCACGACCCTCACACGTCACCGCAGTCAGTTGGCTCAAGTATTACTTCCATGAGATTGACGACACGGCCATTCGGTCCCATTTCAACAGAGGTCTTGTTCAGATGGAATGCCCAAGTTCAATTCGGAAGGAAGGGCAAGTGAAACACATGAGAAAGATTAGGCCTAGTCATGTAATGGATGAAGGTGCAAGAGTATATGTGCCCGTGTCGATTGCGGATAGTAAAGTTTCAAGGAGATTCGACTGCATACCGAGTGAGACGTTGTACCCAAATGCGGATGAGATTGACTACTTGCAAAGGCTTGTCAAGTACAAGGACTCTGCTATAATAGTGCTGAACAAGCCCCCAAAATTGCCGGTTAAGGGTAATGTGCCAGTCCATAACAGCATGGATGCATTGGCAGCAGCAGCGTTATCTTATGATTATGATGAAGGTCCTAAATTGGTTCATCGGCTTGATAGAGAGAGCAGTGGCCTCCTTTTAATGGGAAGAACAAAAGAAAGTGTATCTGTTCTGCAGTCGTTATACACTGACATCAACATTGGGAAATCATCATGCAGGGCTTGGAATGATGCATGTAGAGCAAAATGTCAGAGGTACTGGGCATTGGTTATAGGGTCACCCAAGGAAAAGGAAGGCTTAATTTGTGCTCCTCTTACGAAGCTGCATCTTGACGATGGGAAGACGGAGAGGGTCATCTTGGCTCATCAATCAGGATTAGAAGCTTCCCAACCGGCTCTAACTCAATATCGGGTGCTTGGTCCTACGATAAATGGATGCTCATGGATTGAATTACAACCACTCACTAGCCGAAAGCATCAGCTCCGTGTTCATTGTGCTGAAGCTCTAGGCACACCAATTGTGGGTGACTATAAGTATGGGTGGTATGTTCACCGGAGATGGAAACAAATGCCTCAAGTCGATATCGAGCCAGCAACTGGGCTACAGTACAAGTTGCGGAGGCCAGCGGGTCTGGATGTACAGAAGGGAAGTGTTCTATCAAAAGTCCCTCTTTTACATCTACATTGTAGAGAGCTCGTACTCCCCAATATTGCTAAGTTCCTTGTCTTATTGGATCAGAAGTTAGACAACCGGCACCCTGTAGATCGTTCGAAGCCAGATGTCCTTCGGTTTGTGGCATCAATGCCAACGCACATGAAACTTAGTTGGAATCTCATGTCATCTTTTTTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

473

Amino Acids

53.45

Weight (kDa)

9.69

Isoelectric Point (pI)

54.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PseudoU_synth_2	PF00849	184 - 355	1.8e-22	RNA pseudouridylate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78910 AT1G78910
fragaria_vesca	FvH4_5g04730 FvH4_5g04730 FvH4_5g04730 FvH4_5g04730
malus_domestica	MD06G1108500.v1.1
prunus_persica	Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1
pyrus_communis	pycom06g10190
rosa_chinensis	RchiOBHm_Chr1g0363621 RchiOBHm_Chr6g0299231 RchiOBHm_Chr7g0194671
rosa_laevigata	RLG00000004184 RLG00000011451
rosa_multiflora	Rmu_sc0000548.1_g000009 Rmu_sc0015513.1_g000002
rosa_roxburghii	Rroxscaffold_3G00261180 Rroxscaffold_3G00261210 Rroxscaffold_7G00168890
rosa_rugosa	Rorug01G0308200 Rorug01G0308200 Rorug06G0286400 Rorug07G0016600 Rorug07G0016700
rosa_samantha	Rh1AG317100 Rh6CG412300 Rh6DG399000 Rh7BG144500 Rh7CG148400 Rh7DG145800
rosa_wichuraiana	Rw1G028120 Rw6G034810 Rw7G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1320
AccB7I	CCANNNNNTGG	1 cut(s)	1163
AccBSI	CCGCTC	1 cut(s)	88
AccI	GTMKAC	1 cut(s)	181
AclWI	GGATC	1 cut(s)	1308
AcoI	YGGCCR	2 cut(s)	111, 291
AcuI	CTGAAG	1 cut(s)	1086
AcvI	CACGTG	2 cut(s)	31, 109
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	7 cut(s)	43, 491, 536, 824, 1175, 1206, 1266
AfiI	CCNNNNNNNGG	8 cut(s)	130, 134, 176, 499, 587, 709, 1088, 1163
AflIII	ACRYGT	2 cut(s)	30, 238
AgsI	TTSAA	4 cut(s)	310, 345, 456, 1016
AjiI	CACGTC	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	7 cut(s)	60, 154, 889, 950, 1048, 1070, 1261
AluI	AGCT	7 cut(s)	60, 154, 889, 950, 1048, 1070, 1261
Alw21I	GWGCWC	2 cut(s)	877, 1263
Alw26I	GTCTC	1 cut(s)	476
AlwI	GGATC	1 cut(s)	1308
AlwNI	CAGNNNCTG	1 cut(s)	1163
AoxI	GGCC	7 cut(s)	111, 121, 136, 291, 386, 697, 1187
ApaI	GGGCCC	1 cut(s)	125
ApeKI	GCWGC	5 cut(s)	151, 626, 629, 632, 889
AspS9I	GGNCC	7 cut(s)	77, 121, 122, 137, 300, 659, 986
AsuC2I	CCSGG	2 cut(s)	177, 192
AsuHPI	GGTGA	4 cut(s)	235, 837, 1103, 1109
AsuII	TTCGAA	1 cut(s)	1337
AvaII	GGWCC	4 cut(s)	77, 300, 659, 986
BaeGI	GKGCMC	2 cut(s)	125, 429
BalI	TGGCCA	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	1320
BanII	GRGCYC	2 cut(s)	125, 1263
BarI	GAAGNNNNNNTAC	2 cut(s)	191, 223
BbrPI	CACGTG	2 cut(s)	31, 109
BbsI	GAAGAC	1 cut(s)	914
Bbv12I	GWGCWC	2 cut(s)	877, 1263
BbvI	GCAGC	5 cut(s)	163, 638, 641, 644, 876
BccI	CCATC	3 cut(s)	322, 896, 1119
BceAI	ACGGC	2 cut(s)	232, 306
BciT130I	CCWGG	1 cut(s)	148
BcnI	CCSGG	2 cut(s)	177, 192
BcoDI	GTCTC	1 cut(s)	476
BfaI	CTAG	4 cut(s)	57, 390, 1032, 1073
BfmI	CTRYAG	3 cut(s)	740, 1169, 1326
BisI	GCNGC	8 cut(s)	83, 86, 152, 167, 627, 630, 633, 890
BlsI	GCNGC	8 cut(s)	84, 87, 153, 168, 628, 631, 634, 891
Bme1390I	CCNGG	3 cut(s)	148, 177, 192
Bme18I	GGWCC	4 cut(s)	77, 300, 659, 986
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	7 cut(s)	77, 121, 122, 137, 300, 659, 986
BmiI	GGNNCC	3 cut(s)	123, 302, 1322
BmrFI	CCNGG	3 cut(s)	148, 177, 192
BmrI	ACTGGG	2 cut(s)	835, 1173
BmsI	GCATC	6 cut(s)	607, 787, 901, 992, 1051, 1373
BmuI	ACTGGG	2 cut(s)	835, 1173
BpiI	GAAGAC	1 cut(s)	914
Bpu14I	TTCGAA	1 cut(s)	1337
BpuEI	CTTGAG	2 cut(s)	245, 1125
BpuMI	CCSGG	2 cut(s)	177, 192
BsaAI	YACGTR	2 cut(s)	31, 109
BsaHI	GRCGYC	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	146, 191, 849
BsaWI	WCCGGW	1 cut(s)	1119
Bsc4I	CCNNNNNNNGG	8 cut(s)	130, 134, 176, 499, 587, 709, 1088, 1163
Bse118I	RCCGGY	3 cut(s)	580, 958, 1317
Bse1I	ACTGG	3 cut(s)	599, 830, 1168
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	3 cut(s)	146, 191, 849
BseGI	GGATG	7 cut(s)	15, 90, 409, 508, 622, 1007, 1207
BseLI	CCNNNNNNNGG	8 cut(s)	130, 134, 176, 499, 587, 709, 1088, 1163
BseNI	ACTGG	3 cut(s)	599, 830, 1168
BseRI	GAGGAG	1 cut(s)	867
BseSI	GKGCMC	2 cut(s)	125, 429
BseXI	GCAGC	5 cut(s)	163, 638, 641, 644, 876
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	7 cut(s)	113, 123, 138, 293, 388, 699, 1189
BshNI	GGYRCC	1 cut(s)	1320
BsiEI	CGRYCG	1 cut(s)	181
BsiHKAI	GWGCWC	2 cut(s)	877, 1263
BsiSI	CCGG	7 cut(s)	75, 177, 191, 581, 959, 1120, 1318
BslFI	GGGAC	2 cut(s)	286, 1217
BslI	CCNNNNNNNGG	8 cut(s)	130, 134, 176, 499, 587, 709, 1088, 1163
BsmAI	GTCTC	1 cut(s)	476
BsmBI	CGTCTC	1 cut(s)	476
BsmFI	GGGAC	2 cut(s)	286, 1217
BsmI	GAATGC	1 cut(s)	338
BsnI	GGCC	7 cut(s)	113, 123, 138, 293, 388, 699, 1189
Bsp119I	TTCGAA	1 cut(s)	1337
Bsp120I	GGGCCC	1 cut(s)	121
Bsp1286I	GDGCHC	4 cut(s)	125, 429, 877, 1263
Bsp1407I	TGTACA	1 cut(s)	1204
Bsp143I	GATC	2 cut(s)	1300, 1330
BspANI	GGCC	7 cut(s)	113, 123, 138, 293, 388, 699, 1189
BspLI	GGNNCC	3 cut(s)	123, 302, 1322
BspMAI	CTGCAG	1 cut(s)	744
BspPI	GGATC	1 cut(s)	1308
BspT104I	TTCGAA	1 cut(s)	1337
BspT107I	GGYRCC	1 cut(s)	1320
BsrBI	CCGCTC	1 cut(s)	88
BsrFI	RCCGGY	3 cut(s)	580, 958, 1317
BsrGI	TGTACA	1 cut(s)	1204
BsrI	ACTGG	3 cut(s)	599, 830, 1168
BssAI	RCCGGY	3 cut(s)	580, 958, 1317
BssECI	CCNNGG	3 cut(s)	146, 191, 849
BssMI	GATC	2 cut(s)	1300, 1330
BssNI	GRCGYC	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	849
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	1173
BstACI	GRCGYC	1 cut(s)	219
BstAUI	TGTACA	1 cut(s)	1204
BstBAI	YACGTR	2 cut(s)	31, 109
BstBI	TTCGAA	1 cut(s)	1337
BstC8I	GCNNGC	2 cut(s)	1158, 1191
BstDEI	CTNAG	2 cut(s)	1281, 1388
BstEII	GGTNACC	1 cut(s)	843
BstF5I	GGATG	7 cut(s)	15, 90, 409, 508, 622, 1007, 1207
BstKTI	GATC	2 cut(s)	1303, 1333
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	2 cut(s)	1300, 1330
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	5 cut(s)	151, 565, 626, 632, 806
BstNI	CCWGG	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	804
BstPI	GGTNACC	1 cut(s)	843
BstSCI	CCNGG	3 cut(s)	146, 175, 190
BstSFI	CTRYAG	3 cut(s)	740, 1169, 1326
BstSLI	GKGCMC	2 cut(s)	125, 429
BstV1I	GCAGC	5 cut(s)	163, 638, 641, 644, 876
BstV2I	GAAGAC	1 cut(s)	914
BsuRI	GGCC	7 cut(s)	113, 123, 138, 293, 388, 699, 1189
BtrI	CACGTC	1 cut(s)	241
BtsCI	GGATG	7 cut(s)	15, 90, 409, 508, 622, 1007, 1207
BtsI	GCAGTG	1 cut(s)	700
BtsIMutI	CAGTG	2 cut(s)	700, 753
Cac8I	GCNNGC	2 cut(s)	1158, 1191
CaiI	CAGNNNCTG	1 cut(s)	1163
Cfr10I	RCCGGY	3 cut(s)	580, 958, 1317
Cfr13I	GGNCC	7 cut(s)	77, 121, 122, 137, 300, 659, 986
CpoI	CGGWCCG	1 cut(s)	77
CseI	GACGC	1 cut(s)	208
Csp6I	GTAC	7 cut(s)	42, 490, 535, 823, 1174, 1205, 1265
CspI	CGGWCCG	1 cut(s)	77
CviAII	CATG	9 cut(s)	275, 373, 395, 613, 780, 801, 1008, 1381, 1402
CviQI	GTAC	7 cut(s)	42, 490, 535, 823, 1174, 1205, 1265
DdeI	CTNAG	2 cut(s)	1281, 1388
DpnI	GATC	2 cut(s)	1302, 1332
DpnII	GATC	2 cut(s)	1300, 1330
EaeI	YGGCCR	2 cut(s)	111, 291
Ecl136II	GAGCTC	1 cut(s)	1261
Eco130I	CCWWGG	1 cut(s)	849
Eco147I	AGGCCT	1 cut(s)	388
Eco24I	GRGCYC	2 cut(s)	125, 1263
Eco32I	GATATC	1 cut(s)	1150
Eco47I	GGWCC	4 cut(s)	77, 300, 659, 986
Eco53kI	GAGCTC	1 cut(s)	1261
Eco57I	CTGAAG	1 cut(s)	1086
Eco72I	CACGTG	2 cut(s)	31, 109
Eco91I	GGTNACC	1 cut(s)	843
EcoICRI	GAGCTC	1 cut(s)	1261
EcoO109I	RGGNCCY	1 cut(s)	659
EcoO65I	GGTNACC	1 cut(s)	843
EcoRII	CCWGG	1 cut(s)	146
EcoRV	GATATC	1 cut(s)	1150
EcoT14I	CCWWGG	1 cut(s)	849
EcoT22I	ATGCAT	2 cut(s)	622, 802
EcoT38I	GRGCYC	2 cut(s)	125, 1263
ErhI	CCWWGG	1 cut(s)	849
Esp3I	CGTCTC	1 cut(s)	476
FaeI	CATG	9 cut(s)	278, 376, 398, 616, 783, 804, 1011, 1384, 1405
FalI	AAGNNNNNCTT	6 cut(s)	254, 286, 848, 880, 1221, 1253
FaqI	GGGAC	2 cut(s)	286, 1217
FatI	CATG	9 cut(s)	274, 372, 394, 612, 779, 800, 1007, 1380, 1401
FauI	CCCGC	1 cut(s)	1186
FblI	GTMKAC	1 cut(s)	181
Fnu4HI	GCNGC	8 cut(s)	83, 86, 152, 167, 627, 630, 633, 890
FokI	GGATG	7 cut(s)	2, 77, 416, 515, 629, 1014, 1214
FriOI	GRGCYC	2 cut(s)	125, 1263
Fsp4HI	GCNGC	8 cut(s)	83, 86, 152, 167, 627, 630, 633, 890
FspBI	CTAG	4 cut(s)	57, 390, 1032, 1073
GluI	GCNGC	8 cut(s)	83, 86, 152, 167, 627, 630, 633, 890
HaeIII	GGCC	7 cut(s)	113, 123, 138, 293, 388, 699, 1189
HapII	CCGG	7 cut(s)	75, 177, 191, 581, 959, 1120, 1318
HgaI	GACGC	1 cut(s)	208
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	9 cut(s)	278, 376, 398, 616, 783, 804, 1011, 1384, 1405
HincII	GTYRAC	1 cut(s)	182
HindII	GTYRAC	1 cut(s)	182
HindIII	AAGCTT	1 cut(s)	948
HinfI	GANTC	4 cut(s)	12, 462, 542, 1396
HpaII	CCGG	7 cut(s)	75, 177, 191, 581, 959, 1120, 1318
HphI	GGTGA	4 cut(s)	235, 837, 1103, 1109
Hpy166II	GTNNAC	2 cut(s)	182, 1117
Hpy188I	TCNGA	6 cut(s)	67, 95, 327, 351, 819, 1305
Hpy188III	TCNNGA	4 cut(s)	228, 896, 939, 1199
Hpy8I	GTNNAC	2 cut(s)	182, 1117
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	9 cut(s)	124, 128, 346, 350, 401, 650, 854, 1204, 1361
HpyCH4III	ACNGT	1 cut(s)	1173
HpyCH4IV	ACGT	4 cut(s)	30, 108, 240, 485
HpyCH4V	TGCA	8 cut(s)	413, 471, 520, 620, 742, 783, 800, 892
HpyF10VI	GCNNNNNNNGC	5 cut(s)	151, 565, 626, 632, 806
HpyF3I	CTNAG	2 cut(s)	1281, 1388
HpySE526I	ACGT	4 cut(s)	30, 108, 240, 485
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	9 cut(s)	278, 376, 398, 616, 783, 804, 1011, 1384, 1405
Kzo9I	GATC	2 cut(s)	1300, 1330
LmnI	GCTCC	2 cut(s)	880, 1053
Lsp1109I	GCAGC	5 cut(s)	163, 638, 641, 644, 876
LweI	GCATC	6 cut(s)	607, 787, 901, 992, 1051, 1373
MaeI	CTAG	4 cut(s)	57, 390, 1032, 1073
MaeII	ACGT	4 cut(s)	30, 108, 240, 485
MaeIII	GTNAC	4 cut(s)	33, 241, 843, 1091
MalI	GATC	2 cut(s)	1302, 1332
MbiI	CCGCTC	1 cut(s)	88
MboI	GATC	2 cut(s)	1300, 1330
MboII	GAAGA	5 cut(s)	21, 208, 211, 726, 919
MfeI	CAATTG	1 cut(s)	1083
MhlI	GDGCHC	4 cut(s)	125, 429, 877, 1263
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	7 cut(s)	116, 345, 575, 665, 867, 1016, 1083
MluNI	TGGCCA	1 cut(s)	113
MlyI	GAGTC	1 cut(s)	536
MmeI	TCCRAC	1 cut(s)	1373
MnlI	CCTC	9 cut(s)	244, 308, 710, 813, 888, 909, 1149, 1179, 1245
Mox20I	TGGCCA	1 cut(s)	113
Mph1103I	ATGCAT	2 cut(s)	622, 802
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	3 cut(s)	585, 707, 866
Msp20I	TGGCCA	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	1193
MspI	CCGG	7 cut(s)	75, 177, 191, 581, 959, 1120, 1318
MspR9I	CCNGG	3 cut(s)	148, 177, 192
MunI	CAATTG	1 cut(s)	1083
Mva1269I	GAATGC	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	5 cut(s)	151, 565, 626, 632, 806
NciI	CCSGG	2 cut(s)	177, 192
NdeII	GATC	2 cut(s)	1300, 1330
NlaIII	CATG	9 cut(s)	278, 376, 398, 616, 783, 804, 1011, 1384, 1405
NlaIV	GGNNCC	3 cut(s)	123, 302, 1322
NmuCI	GTSAC	4 cut(s)	33, 241, 843, 1091
NsiI	ATGCAT	2 cut(s)	622, 802
NspI	RCATGY	1 cut(s)	804
NspV	TTCGAA	1 cut(s)	1337
PceI	AGGCCT	1 cut(s)	388
PctI	GAATGC	1 cut(s)	338
PfeI	GAWTC	3 cut(s)	12, 462, 1396
PflFI	GACNNNGTC	1 cut(s)	218
PflMI	CCANNNNNTGG	1 cut(s)	1163
PkrI	GCNGC	8 cut(s)	84, 87, 153, 168, 628, 631, 634, 891
PleI	GAGTC	1 cut(s)	536
PmaCI	CACGTG	2 cut(s)	31, 109
PmlI	CACGTG	2 cut(s)	31, 109
PpsI	GAGTC	1 cut(s)	536
Ppu21I	YACGTR	2 cut(s)	31, 109
PpuMI	RGGWCCY	1 cut(s)	659
Psp124BI	GAGCTC	1 cut(s)	1263
Psp5II	RGGWCCY	1 cut(s)	659
Psp6I	CCWGG	1 cut(s)	146
PspCI	CACGTG	2 cut(s)	31, 109
PspEI	GGTNACC	1 cut(s)	843
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	3 cut(s)	123, 302, 1322
PspOMI	GGGCCC	1 cut(s)	121
PspPI	GGNCC	7 cut(s)	77, 121, 122, 137, 300, 659, 986
PspPPI	RGGWCCY	1 cut(s)	659
PstI	CTGCAG	1 cut(s)	744
PstNI	CAGNNNCTG	1 cut(s)	1163
PsyI	GACNNNGTC	1 cut(s)	218
RsaI	GTAC	7 cut(s)	43, 491, 536, 824, 1175, 1206, 1266
RsaNI	GTAC	7 cut(s)	42, 490, 535, 823, 1174, 1205, 1265
Rsr2I	CGGWCCG	1 cut(s)	77
RsrII	CGGWCCG	1 cut(s)	77
SacI	GAGCTC	1 cut(s)	1263
SalI	GTCGAC	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	585, 707, 866
SatI	GCNGC	8 cut(s)	83, 86, 152, 167, 627, 630, 633, 890
Sau3AI	GATC	2 cut(s)	1300, 1330
Sau96I	GGNCC	7 cut(s)	77, 121, 122, 137, 300, 659, 986
SchI	GAGTC	1 cut(s)	536
ScrFI	CCNGG	3 cut(s)	148, 177, 192
SduI	GDGCHC	4 cut(s)	125, 429, 877, 1263
SfaNI	GCATC	6 cut(s)	607, 787, 901, 992, 1051, 1373
SfcI	CTRYAG	3 cut(s)	740, 1169, 1326
SfuI	TTCGAA	1 cut(s)	1337
SinI	GGWCC	4 cut(s)	77, 300, 659, 986
SmlI	CTYRAG	2 cut(s)	260, 1140
SmoI	CTYRAG	2 cut(s)	260, 1140
Sse9I	AATT	7 cut(s)	116, 345, 575, 665, 867, 1016, 1083
SseBI	AGGCCT	1 cut(s)	388
SspI	AATATT	1 cut(s)	1276
SspMI	CTAG	4 cut(s)	57, 390, 1032, 1073
SstI	GAGCTC	1 cut(s)	1263
StuI	AGGCCT	1 cut(s)	388
StyD4I	CCNGG	3 cut(s)	146, 175, 190
StyI	CCWWGG	1 cut(s)	849
TaaI	ACNGT	1 cut(s)	1173
TaiI	ACGT	4 cut(s)	33, 111, 243, 488
TaqI	TCGA	7 cut(s)	101, 181, 434, 465, 1146, 1152, 1337
TaqII	GACCGA	1 cut(s)	288
TasI	AATT	7 cut(s)	116, 345, 575, 665, 867, 1016, 1083
TatI	WGTACW	4 cut(s)	41, 534, 1173, 1204
TauI	GCSGC	3 cut(s)	85, 88, 169
TfiI	GAWTC	3 cut(s)	12, 462, 1396
Tru1I	TTAA	3 cut(s)	585, 707, 866
Tru9I	TTAA	3 cut(s)	585, 707, 866
TscAI	CASTG	2 cut(s)	700, 760
TseFI	GTSAC	4 cut(s)	33, 241, 843, 1091
TseI	GCWGC	5 cut(s)	151, 626, 629, 632, 889
Tsp45I	GTSAC	4 cut(s)	33, 241, 843, 1091
TspDTI	ATGAA	5 cut(s)	420, 662, 669, 1046, 1397
TspGWI	ACGGA	2 cut(s)	926, 1040
TspRI	CASTG	2 cut(s)	700, 760
Tth111I	GACNNNGTC	1 cut(s)	218
Van91I	CCANNNNNTGG	1 cut(s)	1163
VpaK11BI	GGWCC	4 cut(s)	77, 300, 659, 986
XceI	RCATGY	1 cut(s)	804
XmiI	GTMKAC	1 cut(s)	181
XspI	CTAG	4 cut(s)	57, 390, 1032, 1073
Zsp2I	ATGCAT	2 cut(s)	622, 802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.