Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001833

Physical Location & Seq

Genomic Coordinates Forward (+)

55681891 .. 55686520

Gene Structure 4630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G028120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

ATGACGGGTAGGAAAACCCAGACCGGAATTCGGAGCCCAAGTCCAAATAGTCACTTCAAGGTGTCTCTGTCTTGTTCTTTAAGTCCGTCAATCACTCCCGCAATCCCAACATGTAAAACGATGCGGAGAAGAATCGTAACCTACTGCCACGTGTCACCCTTTACTCGCCAATACTCTAGCTTATCTCCTCCACCGCCGCAGACCGCCGGACCGCCGCCGCTCATCCGAGTGTCGAACCACGTCGCCAAACTGGGCCCACCGAAAGAAGGCCCGAAACCCAGGCAGCTCCTCTCCTTGCCGCCTTTCCCCGGCGGTCGACATTTGCCGGGGAAGAAGAAGTCATACCAAGACGGCGCCGTTTCACGACCCTCACACGTCACCGCCGTCAGTTGGCTCAAGTATTACTTCCATGAGATTGACGACACCGCCATTCGGTCCCATTTCAACAAAGGCCTTGTTCAGATGGAAGGCCCGGATTCAATTGGGAAGGAAGGGCAAGTGAAACGTATGAGAAAGATTAGGCCTAGTGAGGTAATGGAGGAAGGTGCAAGAGTATATGTACCCGTATCGATTGCAGAGAGTAAAATTTCAAGGAGATTCGACTGCATACCGAGTGAGACATTGTACCCAAATGCGGATGAGATTGACTACTTGCAAAGGCTTGTCAAGTACAAGGACTCTGCTATAATAGTGCTGAACAAGCCCCCAAAATTGCCAGTCAAGGGTAATGTGCCAGTCCATAACAGCATGGATGCATTGGCAGCAGCAGCATTATCTTATGATTATGATGAAGGTCCTAAATTGGTTCATCGGCTTGACAGAGAGAGCAGTGGCCTCCTTTTAATGGGAAGAACAAAAGACAGTGTATCTCTTCTGCATTCGTTATACACTGACATCAACATTGGGAAATCATCATGCAGGGCTTGGAATGATGCATGTAGAACAAAATGTCAGAGGTACTGGGCATTGGTTATAGGGTCGCCCAAGGAAAAGGAAGGCTTAATTTGTGCTCCTCTCATGAAGGTGCTTCTTGACGATGGGAAGACAGAGAGGGTCATCTTGGCTCCTCAGTCAGGATTAGAAGCTTCCCAACCGGCTCTAACTCAATATCGGGTGCTTGGTCCTACGATAAATGGATGCTCATGGATTGAATTACAACCACTCACTAGCCGAAAGCATCAGCTCCGTGTTCATTGTGCTGAAGCTTTAGGCACGCCAATTGTGGGTGACTATAAGTATGGGTGGTTTGTTCACCGGAGATGGAAACAAATGCCTCAAGTCGATATTGAGCCGGCAACTGGGCTACAATACAAGTTGCGGAGGCCAGCAGGTCTGGATGTACAGAAGGGAAGTGTTCTATCAAAAGTCCCTCTTTTGCATCTACACTGTAGAGAGCTCGTACTCCCCAATATTGCTAAGTTCCTTGTTTTATTGGATCAGAAGTCAGACAACTGGCACCCTGTAGACAGTTTGAAGCCAGATATCCTTCGGTTTGTGGCATCGATGCCAACCCACATGAAACTTAGTTGGAATCTCATGTCATCTTATTTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

518

Amino Acids

57.93

Weight (kDa)

9.67

Isoelectric Point (pI)

55.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PseudoU_synth_2	PF00849	229 - 400	1.6e-20	RNA pseudouridylate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78910 AT1G78910
fragaria_vesca	FvH4_5g04730 FvH4_5g04730 FvH4_5g04730 FvH4_5g04730
malus_domestica	MD06G1108500.v1.1
prunus_persica	Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1
pyrus_communis	pycom06g10190
rosa_chinensis	RchiOBHm_Chr1g0363621 RchiOBHm_Chr6g0299231 RchiOBHm_Chr7g0194671
rosa_laevigata	RLG00000004184 RLG00000011451
rosa_multiflora	Rmu_sc0000548.1_g000009 Rmu_sc0015513.1_g000002
rosa_roxburghii	Rroxscaffold_3G00261180 Rroxscaffold_3G00261210 Rroxscaffold_7G00168890
rosa_rugosa	Rorug01G0308200 Rorug01G0308200 Rorug06G0286400 Rorug07G0016600 Rorug07G0016700
rosa_samantha	Rh1AG317100 Rh6CG412300 Rh6DG399000 Rh7BG144500 Rh7CG148400 Rh7DG145800
rosa_wichuraiana	Rw1G028120 Rw6G034810 Rw7G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1319
AccB1I	GGYRCC	2 cut(s)	353, 1455
AccBSI	CCGCTC	1 cut(s)	220
AccI	GTMKAC	2 cut(s)	316, 1464
AclWI	GGATC	1 cut(s)	1443
AcsI	RAATTY	2 cut(s)	27, 585
AcuI	CTGAAG	1 cut(s)	1221
AcvI	CACGTG	1 cut(s)	151
AcyI	GRCGYC	1 cut(s)	354
AfaI	GTAC	6 cut(s)	561, 626, 671, 959, 1341, 1401
AflIII	ACRYGT	3 cut(s)	110, 150, 373
AgsI	TTSAA	6 cut(s)	58, 445, 480, 591, 1151, 1474
AjiI	CACGTC	2 cut(s)	241, 376
AjnI	CCWGG	1 cut(s)	278
AluBI	AGCT	6 cut(s)	180, 286, 1085, 1183, 1205, 1396
AluI	AGCT	6 cut(s)	180, 286, 1085, 1183, 1205, 1396
Alw21I	GWGCWC	2 cut(s)	1012, 1398
Alw26I	GTCTC	2 cut(s)	69, 611
AlwI	GGATC	1 cut(s)	1443
AoxI	GGCC	7 cut(s)	253, 268, 451, 469, 521, 832, 1322
ApaI	GGGCCC	1 cut(s)	257
ApeKI	GCWGC	4 cut(s)	283, 761, 764, 767
ApoI	RAATTY	2 cut(s)	27, 585
AspLEI	GCGC	1 cut(s)	356
AspS9I	GGNCC	8 cut(s)	209, 253, 254, 269, 435, 470, 794, 1121
AsuC2I	CCSGG	3 cut(s)	309, 327, 473
AsuHPI	GGTGA	4 cut(s)	147, 370, 1238, 1244
AvaII	GGWCC	4 cut(s)	209, 435, 794, 1121
BaeGI	GKGCMC	1 cut(s)	257
BanI	GGYRCC	2 cut(s)	353, 1455
BanII	GRGCYC	3 cut(s)	38, 257, 1398
BarI	GAAGNNNNNNTAC	2 cut(s)	326, 358
BbrPI	CACGTG	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	1049
Bbv12I	GWGCWC	2 cut(s)	1012, 1398
BbvI	GCAGC	4 cut(s)	295, 773, 776, 779
BccI	CCATC	3 cut(s)	457, 1031, 1254
BceAI	ACGGC	3 cut(s)	341, 367, 368
BciT130I	CCWGG	1 cut(s)	280
BcnI	CCSGG	3 cut(s)	309, 327, 473
BcoDI	GTCTC	2 cut(s)	69, 611
BfaI	CTAG	3 cut(s)	177, 525, 1167
BfmI	CTRYAG	2 cut(s)	1387, 1461
BfoI	RGCGCY	1 cut(s)	357
BfuAI	ACCTGC	1 cut(s)	1319
BisI	GCNGC	8 cut(s)	197, 215, 218, 284, 299, 762, 765, 768
BlsI	GCNGC	8 cut(s)	198, 216, 219, 285, 300, 763, 766, 769
Bme1390I	CCNGG	4 cut(s)	280, 309, 327, 473
Bme18I	GGWCC	4 cut(s)	209, 435, 794, 1121
BmgBI	CACGTC	2 cut(s)	241, 376
BmgT120I	GGNCC	8 cut(s)	209, 253, 254, 269, 435, 470, 794, 1121
BmiI	GGNNCC	6 cut(s)	35, 255, 355, 437, 1065, 1457
BmrFI	CCNGG	4 cut(s)	280, 309, 327, 473
BmrI	ACTGGG	3 cut(s)	260, 970, 1308
BmsI	GCATC	8 cut(s)	111, 742, 922, 1127, 1186, 1387, 1494, 1508
BmuI	ACTGGG	3 cut(s)	260, 970, 1308
BpiI	GAAGAC	1 cut(s)	1049
BpuEI	CTTGAG	2 cut(s)	380, 1260
BpuMI	CCSGG	3 cut(s)	309, 327, 473
Bsa29I	ATCGAT	2 cut(s)	569, 1502
BsaAI	YACGTR	1 cut(s)	151
BsaHI	GRCGYC	1 cut(s)	354
BsaJI	CCNNGG	4 cut(s)	278, 307, 326, 984
BsaWI	WCCGGW	2 cut(s)	23, 1254
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bse118I	RCCGGY	2 cut(s)	1093, 1291
Bse1I	ACTGG	6 cut(s)	255, 716, 734, 965, 1303, 1457
BseBI	CCWGG	1 cut(s)	280
BseCI	ATCGAT	2 cut(s)	569, 1502
BseDI	CCNNGG	4 cut(s)	278, 307, 326, 984
BseGI	GGATG	5 cut(s)	222, 643, 757, 1142, 1342
BseMII	CTCAG	1 cut(s)	1082
BseNI	ACTGG	6 cut(s)	255, 716, 734, 965, 1303, 1457
BseRI	GAGGAG	4 cut(s)	177, 278, 1002, 1056
BseSI	GKGCMC	1 cut(s)	257
BseXI	GCAGC	4 cut(s)	295, 773, 776, 779
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	7 cut(s)	255, 270, 453, 471, 523, 834, 1324
BshNI	GGYRCC	2 cut(s)	353, 1455
BshVI	ATCGAT	2 cut(s)	569, 1502
BsiEI	CGRYCG	1 cut(s)	316
BsiHKAI	GWGCWC	2 cut(s)	1012, 1398
BsiSI	CCGG	8 cut(s)	24, 207, 309, 326, 473, 1094, 1255, 1292
BslFI	GGGAC	2 cut(s)	421, 1352
BsmAI	GTCTC	2 cut(s)	69, 611
BsmFI	GGGAC	2 cut(s)	421, 1352
BsmI	GAATGC	1 cut(s)	877
BsnI	GGCC	7 cut(s)	255, 270, 453, 471, 523, 834, 1324
Bsp120I	GGGCCC	1 cut(s)	253
Bsp1286I	GDGCHC	4 cut(s)	38, 257, 1012, 1398
Bsp1407I	TGTACA	1 cut(s)	1339
Bsp143I	GATC	1 cut(s)	1435
BspANI	GGCC	7 cut(s)	255, 270, 453, 471, 523, 834, 1324
BspCNI	CTCAG	1 cut(s)	1081
BspDI	ATCGAT	2 cut(s)	569, 1502
BspHI	TCATGA	1 cut(s)	1017
BspLI	GGNNCC	6 cut(s)	35, 255, 355, 437, 1065, 1457
BspMI	ACCTGC	1 cut(s)	1319
BspPI	GGATC	1 cut(s)	1443
BspT107I	GGYRCC	2 cut(s)	353, 1455
BsrBI	CCGCTC	1 cut(s)	220
BsrFI	RCCGGY	2 cut(s)	1093, 1291
BsrGI	TGTACA	1 cut(s)	1339
BsrI	ACTGG	6 cut(s)	255, 716, 734, 965, 1303, 1457
BssAI	RCCGGY	2 cut(s)	1093, 1291
BssECI	CCNNGG	4 cut(s)	278, 307, 326, 984
BssMI	GATC	1 cut(s)	1435
BssNI	GRCGYC	1 cut(s)	354
BssT1I	CCWWGG	1 cut(s)	984
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	3 cut(s)	863, 1388, 1469
Bst6I	CTCTTC	1 cut(s)	876
BstACI	GRCGYC	1 cut(s)	354
BstAUI	TGTACA	1 cut(s)	1339
BstBAI	YACGTR	1 cut(s)	151
BstC8I	GCNNGC	3 cut(s)	1214, 1293, 1326
BstDEI	CTNAG	3 cut(s)	1068, 1416, 1523
BstENI	CCTNNNNNAGG	1 cut(s)	1071
BstF5I	GGATG	5 cut(s)	222, 643, 757, 1142, 1342
BstH2I	RGCGCY	1 cut(s)	357
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	1 cut(s)	1438
BstMAI	GTCTC	2 cut(s)	69, 611
BstMBI	GATC	1 cut(s)	1435
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	3 cut(s)	700, 761, 767
BstNI	CCWGG	1 cut(s)	280
BstNSI	RCATGY	2 cut(s)	114, 939
BstSCI	CCNGG	4 cut(s)	278, 307, 325, 471
BstSFI	CTRYAG	2 cut(s)	1387, 1461
BstSLI	GKGCMC	1 cut(s)	257
BstV1I	GCAGC	4 cut(s)	295, 773, 776, 779
BstV2I	GAAGAC	1 cut(s)	1049
Bsu15I	ATCGAT	2 cut(s)	569, 1502
BsuRI	GGCC	7 cut(s)	255, 270, 453, 471, 523, 834, 1324
BsuTUI	ATCGAT	2 cut(s)	569, 1502
BtrI	CACGTC	2 cut(s)	241, 376
BtsCI	GGATG	5 cut(s)	222, 643, 757, 1142, 1342
BtsI	GCAGTG	1 cut(s)	835
BtsIMutI	CAGTG	4 cut(s)	835, 868, 888, 1384
BveI	ACCTGC	1 cut(s)	1319
Cac8I	GCNNGC	3 cut(s)	1214, 1293, 1326
CciI	TCATGA	1 cut(s)	1017
CfoI	GCGC	1 cut(s)	356
Cfr10I	RCCGGY	2 cut(s)	1093, 1291
Cfr13I	GGNCC	8 cut(s)	209, 253, 254, 269, 435, 470, 794, 1121
ClaI	ATCGAT	2 cut(s)	569, 1502
CpoI	CGGWCCG	1 cut(s)	209
Csp6I	GTAC	6 cut(s)	560, 625, 670, 958, 1340, 1400
CspI	CGGWCCG	1 cut(s)	209
CviAII	CATG	9 cut(s)	111, 410, 748, 915, 936, 1018, 1143, 1516, 1537
CviQI	GTAC	6 cut(s)	560, 625, 670, 958, 1340, 1400
DdeI	CTNAG	3 cut(s)	1068, 1416, 1523
DinI	GGCGCC	1 cut(s)	355
DpnI	GATC	1 cut(s)	1437
DpnII	GATC	1 cut(s)	1435
Eam1104I	CTCTTC	1 cut(s)	876
EarI	CTCTTC	1 cut(s)	876
Ecl136II	GAGCTC	1 cut(s)	1396
Eco130I	CCWWGG	1 cut(s)	984
Eco147I	AGGCCT	2 cut(s)	453, 523
Eco24I	GRGCYC	3 cut(s)	38, 257, 1398
Eco32I	GATATC	1 cut(s)	1483
Eco47I	GGWCC	4 cut(s)	209, 435, 794, 1121
Eco53kI	GAGCTC	1 cut(s)	1396
Eco57I	CTGAAG	1 cut(s)	1221
Eco72I	CACGTG	1 cut(s)	151
EcoICRI	GAGCTC	1 cut(s)	1396
EcoNI	CCTNNNNNAGG	1 cut(s)	1071
EcoO109I	RGGNCCY	1 cut(s)	794
EcoRI	GAATTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	278
EcoRV	GATATC	1 cut(s)	1483
EcoT14I	CCWWGG	1 cut(s)	984
EcoT22I	ATGCAT	2 cut(s)	757, 937
EcoT38I	GRGCYC	3 cut(s)	38, 257, 1398
EgeI	GGCGCC	1 cut(s)	355
EheI	GGCGCC	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	984
FaeI	CATG	9 cut(s)	114, 413, 751, 918, 939, 1021, 1146, 1519, 1540
FalI	AAGNNNNNCTT	6 cut(s)	389, 421, 983, 1015, 1356, 1388
FaqI	GGGAC	2 cut(s)	421, 1352
FatI	CATG	9 cut(s)	110, 409, 747, 914, 935, 1017, 1142, 1515, 1536
FauI	CCCGC	1 cut(s)	106
FblI	GTMKAC	2 cut(s)	316, 1464
Fnu4HI	GCNGC	8 cut(s)	197, 215, 218, 284, 299, 762, 765, 768
FokI	GGATG	5 cut(s)	209, 650, 764, 1149, 1349
FriOI	GRGCYC	3 cut(s)	38, 257, 1398
Fsp4HI	GCNGC	8 cut(s)	197, 215, 218, 284, 299, 762, 765, 768
FspBI	CTAG	3 cut(s)	177, 525, 1167
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	8 cut(s)	197, 215, 218, 284, 299, 762, 765, 768
HaeII	RGCGCY	1 cut(s)	357
HaeIII	GGCC	7 cut(s)	255, 270, 453, 471, 523, 834, 1324
HapII	CCGG	8 cut(s)	24, 207, 309, 326, 473, 1094, 1255, 1292
HhaI	GCGC	1 cut(s)	356
Hin1I	GRCGYC	1 cut(s)	354
Hin1II	CATG	9 cut(s)	114, 413, 751, 918, 939, 1021, 1146, 1519, 1540
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HincII	GTYRAC	1 cut(s)	317
HindII	GTYRAC	1 cut(s)	317
HindIII	AAGCTT	2 cut(s)	1083, 1203
HinfI	GANTC	5 cut(s)	132, 476, 597, 677, 1531
HpaII	CCGG	8 cut(s)	24, 207, 309, 326, 473, 1094, 1255, 1292
HphI	GGTGA	4 cut(s)	147, 370, 1238, 1244
Hpy166II	GTNNAC	3 cut(s)	317, 1252, 1465
Hpy188I	TCNGA	6 cut(s)	33, 227, 462, 954, 1440, 1447
Hpy188III	TCNNGA	5 cut(s)	363, 1018, 1031, 1074, 1334
Hpy8I	GTNNAC	3 cut(s)	317, 1252, 1465
Hpy99I	CGWCG	1 cut(s)	245
HpyCH4III	ACNGT	3 cut(s)	863, 1388, 1469
HpyCH4IV	ACGT	4 cut(s)	150, 240, 375, 505
HpyCH4V	TGCA	9 cut(s)	548, 575, 606, 655, 755, 877, 918, 935, 1378
HpyF10VI	GCNNNNNNNGC	3 cut(s)	700, 761, 767
HpyF3I	CTNAG	3 cut(s)	1068, 1416, 1523
HpySE526I	ACGT	4 cut(s)	150, 240, 375, 505
Hsp92I	GRCGYC	1 cut(s)	354
Hsp92II	CATG	9 cut(s)	114, 413, 751, 918, 939, 1021, 1146, 1519, 1540
HspAI	GCGC	1 cut(s)	354
KasI	GGCGCC	1 cut(s)	353
KroI	GCCGGC	1 cut(s)	1291
KroNI	GCCGGC	1 cut(s)	1293
Kzo9I	GATC	1 cut(s)	1435
LmnI	GCTCC	5 cut(s)	33, 291, 1015, 1069, 1188
Lsp1109I	GCAGC	4 cut(s)	295, 773, 776, 779
LweI	GCATC	8 cut(s)	111, 742, 922, 1127, 1186, 1387, 1494, 1508
MaeI	CTAG	3 cut(s)	177, 525, 1167
MaeII	ACGT	4 cut(s)	150, 240, 375, 505
MaeIII	GTNAC	5 cut(s)	50, 136, 153, 376, 1226
MalI	GATC	1 cut(s)	1437
MbiI	CCGCTC	1 cut(s)	220
MboI	GATC	1 cut(s)	1435
MboII	GAAGA	6 cut(s)	141, 343, 346, 861, 863, 1054
MfeI	CAATTG	2 cut(s)	480, 1218
MhlI	GDGCHC	4 cut(s)	38, 257, 1012, 1398
MluCI	AATT	8 cut(s)	27, 480, 585, 710, 800, 1002, 1151, 1218
Mly113I	GGCGCC	1 cut(s)	354
MlyI	GAGTC	1 cut(s)	671
MmeI	TCCRAC	1 cut(s)	1508
Mph1103I	ATGCAT	2 cut(s)	757, 937
MroNI	GCCGGC	1 cut(s)	1291
MseI	TTAA	3 cut(s)	80, 842, 1001
MslI	CAYNNNNRTG	2 cut(s)	227, 1022
MspI	CCGG	8 cut(s)	24, 207, 309, 326, 473, 1094, 1255, 1292
MspR9I	CCNGG	4 cut(s)	280, 309, 327, 473
MunI	CAATTG	2 cut(s)	480, 1218
Mva1269I	GAATGC	1 cut(s)	877
MvaI	CCWGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	3 cut(s)	700, 761, 767
NaeI	GCCGGC	1 cut(s)	1293
NarI	GGCGCC	1 cut(s)	354
NciI	CCSGG	3 cut(s)	309, 327, 473
NdeII	GATC	1 cut(s)	1435
NgoMIV	GCCGGC	1 cut(s)	1291
NlaIII	CATG	9 cut(s)	114, 413, 751, 918, 939, 1021, 1146, 1519, 1540
NlaIV	GGNNCC	6 cut(s)	35, 255, 355, 437, 1065, 1457
NmuCI	GTSAC	4 cut(s)	50, 153, 376, 1226
NsiI	ATGCAT	2 cut(s)	757, 937
NspI	RCATGY	2 cut(s)	114, 939
PagI	TCATGA	1 cut(s)	1017
PceI	AGGCCT	2 cut(s)	453, 523
PciI	ACATGT	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PctI	GAATGC	1 cut(s)	877
PdiI	GCCGGC	1 cut(s)	1293
PfeI	GAWTC	4 cut(s)	132, 476, 597, 1531
PkrI	GCNGC	8 cut(s)	198, 216, 219, 285, 300, 763, 766, 769
PleI	GAGTC	1 cut(s)	671
PluTI	GGCGCC	1 cut(s)	357
PmaCI	CACGTG	1 cut(s)	151
PmlI	CACGTG	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	671
Ppu21I	YACGTR	1 cut(s)	151
PpuMI	RGGWCCY	1 cut(s)	794
PscI	ACATGT	1 cut(s)	110
Psp124BI	GAGCTC	1 cut(s)	1398
Psp5II	RGGWCCY	1 cut(s)	794
Psp6I	CCWGG	1 cut(s)	278
PspCI	CACGTG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	6 cut(s)	35, 255, 355, 437, 1065, 1457
PspOMI	GGGCCC	1 cut(s)	253
PspPI	GGNCC	8 cut(s)	209, 253, 254, 269, 435, 470, 794, 1121
PspPPI	RGGWCCY	1 cut(s)	794
RsaI	GTAC	6 cut(s)	561, 626, 671, 959, 1341, 1401
RsaNI	GTAC	6 cut(s)	560, 625, 670, 958, 1340, 1400
RseI	CAYNNNNRTG	2 cut(s)	227, 1022
Rsr2I	CGGWCCG	1 cut(s)	209
RsrII	CGGWCCG	1 cut(s)	209
SacI	GAGCTC	1 cut(s)	1398
SalI	GTCGAC	1 cut(s)	315
SaqAI	TTAA	3 cut(s)	80, 842, 1001
SatI	GCNGC	8 cut(s)	197, 215, 218, 284, 299, 762, 765, 768
Sau3AI	GATC	1 cut(s)	1435
Sau96I	GGNCC	8 cut(s)	209, 253, 254, 269, 435, 470, 794, 1121
SchI	GAGTC	1 cut(s)	671
ScrFI	CCNGG	4 cut(s)	280, 309, 327, 473
SduI	GDGCHC	4 cut(s)	38, 257, 1012, 1398
SfaNI	GCATC	8 cut(s)	111, 742, 922, 1127, 1186, 1387, 1494, 1508
SfcI	CTRYAG	2 cut(s)	1387, 1461
SfoI	GGCGCC	1 cut(s)	355
SinI	GGWCC	4 cut(s)	209, 435, 794, 1121
SmiMI	CAYNNNNRTG	2 cut(s)	227, 1022
SmlI	CTYRAG	2 cut(s)	395, 1275
SmoI	CTYRAG	2 cut(s)	395, 1275
Sse9I	AATT	8 cut(s)	27, 480, 585, 710, 800, 1002, 1151, 1218
SseBI	AGGCCT	2 cut(s)	453, 523
SspDI	GGCGCC	1 cut(s)	353
SspI	AATATT	1 cut(s)	1411
SspMI	CTAG	3 cut(s)	177, 525, 1167
SstI	GAGCTC	1 cut(s)	1398
StuI	AGGCCT	2 cut(s)	453, 523
StyD4I	CCNGG	4 cut(s)	278, 307, 325, 471
StyI	CCWWGG	1 cut(s)	984
TaaI	ACNGT	3 cut(s)	863, 1388, 1469
TaiI	ACGT	4 cut(s)	153, 243, 378, 508
TaqI	TCGA	6 cut(s)	233, 316, 569, 600, 1281, 1502
TaqII	GACCGA	1 cut(s)	423
TasI	AATT	8 cut(s)	27, 480, 585, 710, 800, 1002, 1151, 1218
TatI	WGTACW	2 cut(s)	669, 1339
TauI	GCSGC	4 cut(s)	199, 217, 220, 301
TfiI	GAWTC	4 cut(s)	132, 476, 597, 1531
Tru1I	TTAA	3 cut(s)	80, 842, 1001
Tru9I	TTAA	3 cut(s)	80, 842, 1001
TscAI	CASTG	4 cut(s)	835, 868, 895, 1391
TseFI	GTSAC	4 cut(s)	50, 153, 376, 1226
TseI	GCWGC	4 cut(s)	283, 761, 764, 767
Tsp45I	GTSAC	4 cut(s)	50, 153, 376, 1226
TspDTI	ATGAA	5 cut(s)	797, 804, 1034, 1181, 1532
TspGWI	ACGGA	2 cut(s)	75, 1175
TspRI	CASTG	4 cut(s)	835, 868, 895, 1391
VpaK11BI	GGWCC	4 cut(s)	209, 435, 794, 1121
XagI	CCTNNNNNAGG	1 cut(s)	1071
XapI	RAATTY	2 cut(s)	27, 585
XceI	RCATGY	2 cut(s)	114, 939
XmiI	GTMKAC	2 cut(s)	316, 1464
XspI	CTAG	3 cut(s)	177, 525, 1167
Zsp2I	ATGCAT	2 cut(s)	757, 937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.