Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015513.1

Orthogroup ID

OG0001833

Physical Location & Seq

Genomic Coordinates Forward (+)

8235 .. 9950

Gene Structure 1716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015513.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atgcggatgagattgactacttgcaaaggcttgtcaagtacaagttatttttatgtagctgcacttgccggttttcatcagtgtgtttacatttctgattattgtattttggttatatgtaaggactctgctataatagtgctgaacaagcccccaaaattgccagtcaagggtaatgtgccagtccataacagcatggatgcattggcagcagcagcattatcttatgattatgatgaaggtcctaaattggttcatcggcttgacagagagagcagtggcctccttttaatgggaagaacaaaagacagtgtatctcttctgcattcgttatacgctgacatcaacattgggaaatcatcatgcagggcttggaatgatgcatgtagaacaaaatgtcagaggtactgggcattagttatagggtcgcccaaggaaaaggaaggcttaatttgtgctcctctcatgaaggtgcttcttgacgatgggaagacagagagggtcatcttggctcatcagtcaggattagaagcttcccaaccggctctaactcaatatcgggtgcttggtcctacgataaatggatgctcatggattgaattacaaccactcactagccgaaagcatcagctccgtgttcattgtgctgaagctttaggcacgccaattgtgggtgactataagtatgggtggtttgttcaccggagatggaaacaaatgcctcaagtcgatattgagccggcaactgggctacaatacaagttgcggaggccagcaggtctggatgtacagaagggaagtgttctatcaaaagtccctcttttgcatctacactgtagagagctcgtactccccaatattgctaagttccttgttttattggatcagaagtcagacaactggcaccctgtagacagtttgaagccagatatccttcggtttgtggcatcgatgccaacccacatgaaacttagttggaatctcatgtcatcttatttggtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

334

Amino Acids

37.45

Weight (kDa)

9.22

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78910 AT1G78910
fragaria_vesca	FvH4_5g04730 FvH4_5g04730 FvH4_5g04730 FvH4_5g04730
malus_domestica	MD06G1108500.v1.1
prunus_persica	Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1
pyrus_communis	pycom06g10190
rosa_chinensis	RchiOBHm_Chr1g0363621 RchiOBHm_Chr6g0299231 RchiOBHm_Chr7g0194671
rosa_laevigata	RLG00000004184 RLG00000011451
rosa_multiflora	Rmu_sc0000548.1_g000009 Rmu_sc0015513.1_g000002
rosa_roxburghii	Rroxscaffold_3G00261180 Rroxscaffold_3G00261210 Rroxscaffold_7G00168890
rosa_rugosa	Rorug01G0308200 Rorug01G0308200 Rorug06G0286400 Rorug07G0016600 Rorug07G0016700
rosa_samantha	Rh1AG317100 Rh6CG412300 Rh6DG399000 Rh7BG144500 Rh7CG148400 Rh7DG145800
rosa_wichuraiana	Rw1G028120 Rw6G034810 Rw7G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	767
AccB1I	GGYRCC	1 cut(s)	903
AccI	GTMKAC	1 cut(s)	912
AciI	CCGC	2 cut(s)	4, 766
AclWI	GGATC	1 cut(s)	891
AcuI	CTGAAG	1 cut(s)	669
AfaI	GTAC	4 cut(s)	40, 407, 789, 849
AfiI	CCNNNNNNNGG	4 cut(s)	170, 292, 671, 746
AgsI	TTSAA	2 cut(s)	599, 922
AluBI	AGCT	5 cut(s)	59, 533, 631, 653, 844
AluI	AGCT	5 cut(s)	59, 533, 631, 653, 844
Alw21I	GWGCWC	2 cut(s)	460, 846
AlwI	GGATC	1 cut(s)	891
AoxI	GGCC	2 cut(s)	280, 770
ApeKI	GCWGC	4 cut(s)	59, 209, 212, 215
AspS9I	GGNCC	2 cut(s)	242, 569
AsuHPI	GGTGA	2 cut(s)	686, 692
AvaII	GGWCC	2 cut(s)	242, 569
BanI	GGYRCC	1 cut(s)	903
BanII	GRGCYC	1 cut(s)	846
BbsI	GAAGAC	1 cut(s)	497
Bbv12I	GWGCWC	2 cut(s)	460, 846
BbvI	GCAGC	4 cut(s)	46, 221, 224, 227
BccI	CCATC	2 cut(s)	479, 702
BfaI	CTAG	1 cut(s)	615
BfmI	CTRYAG	2 cut(s)	835, 909
BfuAI	ACCTGC	1 cut(s)	767
BisI	GCNGC	4 cut(s)	60, 210, 213, 216
BlsI	GCNGC	4 cut(s)	61, 211, 214, 217
Bme18I	GGWCC	2 cut(s)	242, 569
BmgT120I	GGNCC	2 cut(s)	242, 569
BmiI	GGNNCC	1 cut(s)	905
BmrI	ACTGGG	2 cut(s)	418, 756
BmsI	GCATC	7 cut(s)	190, 370, 575, 634, 835, 942, 956
BmuI	ACTGGG	2 cut(s)	418, 756
BpiI	GAAGAC	1 cut(s)	497
BpuEI	CTTGAG	1 cut(s)	708
Bsa29I	ATCGAT	1 cut(s)	950
BsaJI	CCNNGG	1 cut(s)	432
BsaWI	WCCGGW	1 cut(s)	702
Bsc4I	CCNNNNNNNGG	4 cut(s)	170, 292, 671, 746
Bse118I	RCCGGY	3 cut(s)	68, 541, 739
Bse1I	ACTGG	5 cut(s)	164, 182, 413, 751, 905
BseCI	ATCGAT	1 cut(s)	950
BseDI	CCNNGG	1 cut(s)	432
BseGI	GGATG	4 cut(s)	12, 205, 590, 790
BseLI	CCNNNNNNNGG	4 cut(s)	170, 292, 671, 746
BseNI	ACTGG	5 cut(s)	164, 182, 413, 751, 905
BseRI	GAGGAG	1 cut(s)	450
BseXI	GCAGC	4 cut(s)	46, 221, 224, 227
BsgI	GTGCAG	1 cut(s)	45
BshFI	GGCC	2 cut(s)	282, 772
BshNI	GGYRCC	1 cut(s)	903
BshVI	ATCGAT	1 cut(s)	950
BsiHKAI	GWGCWC	2 cut(s)	460, 846
BsiSI	CCGG	4 cut(s)	69, 542, 703, 740
BslFI	GGGAC	1 cut(s)	800
BslI	CCNNNNNNNGG	4 cut(s)	170, 292, 671, 746
BsmFI	GGGAC	1 cut(s)	800
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	2 cut(s)	282, 772
Bsp1286I	GDGCHC	2 cut(s)	460, 846
Bsp1407I	TGTACA	1 cut(s)	787
Bsp143I	GATC	1 cut(s)	883
BspACI	CCGC	2 cut(s)	4, 766
BspANI	GGCC	2 cut(s)	282, 772
BspDI	ATCGAT	1 cut(s)	950
BspHI	TCATGA	1 cut(s)	465
BspLI	GGNNCC	1 cut(s)	905
BspMI	ACCTGC	1 cut(s)	767
BspPI	GGATC	1 cut(s)	891
BspT107I	GGYRCC	1 cut(s)	903
BsrFI	RCCGGY	3 cut(s)	68, 541, 739
BsrGI	TGTACA	1 cut(s)	787
BsrI	ACTGG	5 cut(s)	164, 182, 413, 751, 905
BssAI	RCCGGY	3 cut(s)	68, 541, 739
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	1 cut(s)	883
BssT1I	CCWWGG	1 cut(s)	432
Bst4CI	ACNGT	3 cut(s)	311, 836, 917
Bst6I	CTCTTC	1 cut(s)	324
BstAUI	TGTACA	1 cut(s)	787
BstC8I	GCNNGC	3 cut(s)	662, 741, 774
BstDEI	CTNAG	2 cut(s)	864, 971
BstF5I	GGATG	4 cut(s)	12, 205, 590, 790
BstKTI	GATC	1 cut(s)	886
BstMBI	GATC	1 cut(s)	883
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 148, 209, 215
BstNSI	RCATGY	1 cut(s)	387
BstSFI	CTRYAG	2 cut(s)	835, 909
BstV1I	GCAGC	4 cut(s)	46, 221, 224, 227
BstV2I	GAAGAC	1 cut(s)	497
Bsu15I	ATCGAT	1 cut(s)	950
BsuRI	GGCC	2 cut(s)	282, 772
BsuTUI	ATCGAT	1 cut(s)	950
BtsCI	GGATG	4 cut(s)	12, 205, 590, 790
BtsI	GCAGTG	1 cut(s)	283
BtsIMutI	CAGTG	4 cut(s)	86, 283, 316, 832
BveI	ACCTGC	1 cut(s)	767
Cac8I	GCNNGC	3 cut(s)	662, 741, 774
CciI	TCATGA	1 cut(s)	465
Cfr10I	RCCGGY	3 cut(s)	68, 541, 739
Cfr13I	GGNCC	2 cut(s)	242, 569
ClaI	ATCGAT	1 cut(s)	950
Csp6I	GTAC	4 cut(s)	39, 406, 788, 848
CviAII	CATG	7 cut(s)	196, 363, 384, 466, 591, 964, 985
CviQI	GTAC	4 cut(s)	39, 406, 788, 848
DdeI	CTNAG	2 cut(s)	864, 971
DpnI	GATC	1 cut(s)	885
DpnII	GATC	1 cut(s)	883
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Ecl136II	GAGCTC	1 cut(s)	844
Eco130I	CCWWGG	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	846
Eco32I	GATATC	1 cut(s)	931
Eco47I	GGWCC	2 cut(s)	242, 569
Eco53kI	GAGCTC	1 cut(s)	844
Eco57I	CTGAAG	1 cut(s)	669
EcoICRI	GAGCTC	1 cut(s)	844
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRV	GATATC	1 cut(s)	931
EcoT14I	CCWWGG	1 cut(s)	432
EcoT22I	ATGCAT	2 cut(s)	205, 385
EcoT38I	GRGCYC	1 cut(s)	846
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	7 cut(s)	199, 366, 387, 469, 594, 967, 988
FalI	AAGNNNNNCTT	4 cut(s)	431, 463, 804, 836
FaqI	GGGAC	1 cut(s)	800
FatI	CATG	7 cut(s)	195, 362, 383, 465, 590, 963, 984
FblI	GTMKAC	1 cut(s)	912
Fnu4HI	GCNGC	4 cut(s)	60, 210, 213, 216
FokI	GGATG	4 cut(s)	19, 212, 597, 797
FriOI	GRGCYC	1 cut(s)	846
Fsp4HI	GCNGC	4 cut(s)	60, 210, 213, 216
FspBI	CTAG	1 cut(s)	615
GluI	GCNGC	4 cut(s)	60, 210, 213, 216
HaeIII	GGCC	2 cut(s)	282, 772
HapII	CCGG	4 cut(s)	69, 542, 703, 740
Hin1II	CATG	7 cut(s)	199, 366, 387, 469, 594, 967, 988
HindIII	AAGCTT	2 cut(s)	531, 651
HinfI	GANTC	2 cut(s)	125, 979
HpaII	CCGG	4 cut(s)	69, 542, 703, 740
HphI	GGTGA	2 cut(s)	686, 692
Hpy166II	GTNNAC	3 cut(s)	88, 700, 913
Hpy188I	TCNGA	4 cut(s)	97, 402, 888, 895
Hpy188III	TCNNGA	4 cut(s)	466, 479, 522, 782
Hpy8I	GTNNAC	3 cut(s)	88, 700, 913
HpyAV	CCTTC	5 cut(s)	233, 437, 463, 787, 944
HpyCH4III	ACNGT	3 cut(s)	311, 836, 917
HpyCH4V	TGCA	7 cut(s)	24, 62, 203, 325, 366, 383, 826
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 148, 209, 215
HpyF3I	CTNAG	2 cut(s)	864, 971
Hsp92II	CATG	7 cut(s)	199, 366, 387, 469, 594, 967, 988
KroI	GCCGGC	1 cut(s)	739
KroNI	GCCGGC	1 cut(s)	741
Kzo9I	GATC	1 cut(s)	883
LmnI	GCTCC	2 cut(s)	463, 636
Lsp1109I	GCAGC	4 cut(s)	46, 221, 224, 227
LweI	GCATC	7 cut(s)	190, 370, 575, 634, 835, 942, 956
MaeI	CTAG	1 cut(s)	615
MaeIII	GTNAC	1 cut(s)	674
MalI	GATC	1 cut(s)	885
MboI	GATC	1 cut(s)	883
MboII	GAAGA	3 cut(s)	309, 311, 502
MfeI	CAATTG	1 cut(s)	666
MhlI	GDGCHC	2 cut(s)	460, 846
MluCI	AATT	5 cut(s)	158, 248, 450, 599, 666
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	956
MnlI	CCTC	7 cut(s)	293, 396, 471, 492, 732, 762, 828
Mph1103I	ATGCAT	2 cut(s)	205, 385
MroNI	GCCGGC	1 cut(s)	739
MseI	TTAA	2 cut(s)	290, 449
MslI	CAYNNNNRTG	2 cut(s)	81, 470
MspI	CCGG	4 cut(s)	69, 542, 703, 740
MunI	CAATTG	1 cut(s)	666
Mva1269I	GAATGC	1 cut(s)	325
MwoI	GCNNNNNNNGC	4 cut(s)	65, 148, 209, 215
NaeI	GCCGGC	1 cut(s)	741
NdeII	GATC	1 cut(s)	883
NgoMIV	GCCGGC	1 cut(s)	739
NlaIII	CATG	7 cut(s)	199, 366, 387, 469, 594, 967, 988
NlaIV	GGNNCC	1 cut(s)	905
NmuCI	GTSAC	1 cut(s)	674
NsiI	ATGCAT	2 cut(s)	205, 385
NspI	RCATGY	1 cut(s)	387
PagI	TCATGA	1 cut(s)	465
PctI	GAATGC	1 cut(s)	325
PdiI	GCCGGC	1 cut(s)	741
PfeI	GAWTC	1 cut(s)	979
PkrI	GCNGC	4 cut(s)	61, 211, 214, 217
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PpuMI	RGGWCCY	1 cut(s)	242
Psp124BI	GAGCTC	1 cut(s)	846
Psp5II	RGGWCCY	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	905
PspPI	GGNCC	2 cut(s)	242, 569
PspPPI	RGGWCCY	1 cut(s)	242
RsaI	GTAC	4 cut(s)	40, 407, 789, 849
RsaNI	GTAC	4 cut(s)	39, 406, 788, 848
RseI	CAYNNNNRTG	2 cut(s)	81, 470
SacI	GAGCTC	1 cut(s)	846
SaqAI	TTAA	2 cut(s)	290, 449
SatI	GCNGC	4 cut(s)	60, 210, 213, 216
Sau3AI	GATC	1 cut(s)	883
Sau96I	GGNCC	2 cut(s)	242, 569
SchI	GAGTC	1 cut(s)	119
SduI	GDGCHC	2 cut(s)	460, 846
SetI	ASST	9 cut(s)	61, 244, 407, 474, 535, 633, 655, 781, 846
SfaNI	GCATC	7 cut(s)	190, 370, 575, 634, 835, 942, 956
SfcI	CTRYAG	2 cut(s)	835, 909
SinI	GGWCC	2 cut(s)	242, 569
SmiMI	CAYNNNNRTG	2 cut(s)	81, 470
SmlI	CTYRAG	1 cut(s)	723
SmoI	CTYRAG	1 cut(s)	723
Sse9I	AATT	5 cut(s)	158, 248, 450, 599, 666
SsiI	CCGC	2 cut(s)	4, 766
SspI	AATATT	1 cut(s)	859
SspMI	CTAG	1 cut(s)	615
SstI	GAGCTC	1 cut(s)	846
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	3 cut(s)	311, 836, 917
TaqI	TCGA	2 cut(s)	729, 950
TasI	AATT	5 cut(s)	158, 248, 450, 599, 666
TatI	WGTACW	2 cut(s)	38, 787
TfiI	GAWTC	1 cut(s)	979
Tru1I	TTAA	2 cut(s)	290, 449
Tru9I	TTAA	2 cut(s)	290, 449
TscAI	CASTG	4 cut(s)	86, 283, 316, 839
TseFI	GTSAC	1 cut(s)	674
TseI	GCWGC	4 cut(s)	59, 209, 212, 215
Tsp45I	GTSAC	1 cut(s)	674
TspDTI	ATGAA	6 cut(s)	65, 245, 252, 482, 629, 980
TspGWI	ACGGA	1 cut(s)	623
TspRI	CASTG	4 cut(s)	86, 283, 316, 839
VpaK11BI	GGWCC	2 cut(s)	242, 569
XceI	RCATGY	1 cut(s)	387
XmiI	GTMKAC	1 cut(s)	912
XspI	CTAG	1 cut(s)	615
Zsp2I	ATGCAT	2 cut(s)	205, 385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.