Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001833

Physical Location & Seq

Genomic Coordinates Forward (+)

55048728 .. 55053357

Gene Structure 4630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG317100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

ATGACGGGTAGGAAAACCCAGACCGGAATTCGGAGCCCAAGTCCAAATAGTCACTTCAAGGTGTCTCTGTCTTGTTCTTTAAGGGGAGGAGAAGACAAGAAGAATATTTTGGGCTACTCAACTCCGTCAATCACTCCCGCAATCCCAACATGTAAAACGATGCGGAGAAGAATCGTAACCTACTGCCACGTGTCACCCTTTACTCGCCAATACTCTAGCTTATCTCCTCCACCGCCGCAGACCGCCGGACCGCCGCCGCTCATCCGAGTGTCGAACCACGTCGCCAAACTGGGCCCACCGAAAGAAGGCCCGAAACCCAGGCAGCTCCTCTCCTTGCCGCCTTTCCCCGGCGGTCGACATTTGCCGGGGAAGAAGAAGTCATACCAAGACGGCGCCGTTTCACGACCCTCACACGTCACCGCCGTCAGTTGGCTCAAGTATTACTTCCATGAGATTGACGACACCGCCATTCGGTCCCATTTCAACAAAGGCCTTGTTCAGATGGAAGGCCCGGATTCAATTGGGAAGGAAGGGCAAGTGAAACGTATGAGAAAGATTAGGCCTAGTGAGGTAATGGAGGAAGGTGCAAGAGTATATGTACCCGTATCGATTGCAGAGAGTAAAATTTCAAGGAGATTCGACTGCATACCGAGTGAGACATTGTACCCAAATGCGGATGAGATTGACTACTTGCAAAGGCTTGTCAAGTACAAGGACTCTGCTATAATAGTGCTGAACAAGCCCCCAAAATTGCCAGTCAAGGGTAATGTGCCAGTCCATAACAGCATGGATGCATTGGCAGCAGCAGCATTATCTTATGATTATGATGAAGGTCCTAAATTGGTTCATCGGCTTGACAGAGAGAGCAGTGGCCTCCTTTTAATGGGAAGAACAAAAGACAGTGTATCTCTTCTGCATTCGTTATACACTGACATCAACATTGGGAAATCATCATGCAGGGCTTGGAATGATGCATGTAGAACAAAATGTCAGAGGTACTGGGCATTGGTTATAGGGTCGCCCAAGGAAAAGGAAGGCTTAATTTGTGCTCCTCTCATGAAGGTGCTTCTTGACGATGGGAAGACAGAGAGGGTCATCTTGGCTCCTCAGTCAGGATTAGAAGCTTCCCAACCGGCTCTAACTCAATATCGGGTGCTTGGTCCTACGATAAATGGATGCTCATGGATTGAATTACAACCACTCACTAGCCGAAAGCATCAGCTCCGTGTTCATTGTGCTGAAGCTTTAGGCACGCCAATTGTGGGTGACTATAAGTATGGGTGGTTTGTTCACCGGAGATGGAAACAAATGCCTCAAGTCGATATTGAGCCGGCAACTGGGCTACAATACAAGTTGCGGAGGCCAGCAGGTCTGGATGTACAGAAGGGAAGTGTTCTATCAAAAGTCCCTCTTTTGCATCTACACTGTAGAGAGCTCGTACTCCCCAATATTGCTAAGTTCCTTGTTTTATTGGATCAGAAGTCAGACAACTGGCACCCTGTAGACAGTTTGAAGCCAGATATCCTTCGGTTTGTGGCATCGATGCCAACCCACATGAAACTTAGTTGGAATCTCATGTCATCTTATTTGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001522 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016853 GO:0016866 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

531

Amino Acids

59.36

Weight (kDa)

9.67

Isoelectric Point (pI)

54.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PseudoU_synth_2	PF00849	242 - 413	1.6e-20	RNA pseudouridylate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78910 AT1G78910
fragaria_vesca	FvH4_5g04730 FvH4_5g04730 FvH4_5g04730 FvH4_5g04730
malus_domestica	MD06G1108500.v1.1
prunus_persica	Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1 Prupe.5G121100_v2.0.a1
pyrus_communis	pycom06g10190
rosa_chinensis	RchiOBHm_Chr1g0363621 RchiOBHm_Chr6g0299231 RchiOBHm_Chr7g0194671
rosa_laevigata	RLG00000004184 RLG00000011451
rosa_multiflora	Rmu_sc0000548.1_g000009 Rmu_sc0015513.1_g000002
rosa_roxburghii	Rroxscaffold_3G00261180 Rroxscaffold_3G00261210 Rroxscaffold_7G00168890
rosa_rugosa	Rorug01G0308200 Rorug01G0308200 Rorug06G0286400 Rorug07G0016600 Rorug07G0016700
rosa_samantha	Rh1AG317100 Rh6CG412300 Rh6DG399000 Rh7BG144500 Rh7CG148400 Rh7DG145800
rosa_wichuraiana	Rw1G028120 Rw6G034810 Rw7G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1358
AccB1I	GGYRCC	2 cut(s)	392, 1494
AccBSI	CCGCTC	1 cut(s)	259
AccI	GTMKAC	2 cut(s)	355, 1503
AclWI	GGATC	1 cut(s)	1482
AcsI	RAATTY	2 cut(s)	27, 624
AcuI	CTGAAG	1 cut(s)	1260
AcvI	CACGTG	1 cut(s)	190
AcyI	GRCGYC	1 cut(s)	393
AfaI	GTAC	6 cut(s)	600, 665, 710, 998, 1380, 1440
AflIII	ACRYGT	3 cut(s)	149, 189, 412
AgsI	TTSAA	6 cut(s)	58, 484, 519, 630, 1190, 1513
AjiI	CACGTC	2 cut(s)	280, 415
AjnI	CCWGG	1 cut(s)	317
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	6 cut(s)	219, 325, 1124, 1222, 1244, 1435
AluI	AGCT	6 cut(s)	219, 325, 1124, 1222, 1244, 1435
Alw21I	GWGCWC	2 cut(s)	1051, 1437
Alw26I	GTCTC	2 cut(s)	69, 650
AlwI	GGATC	1 cut(s)	1482
AoxI	GGCC	7 cut(s)	292, 307, 490, 508, 560, 871, 1361
ApaI	GGGCCC	1 cut(s)	296
ApeKI	GCWGC	4 cut(s)	322, 800, 803, 806
ApoI	RAATTY	2 cut(s)	27, 624
AspLEI	GCGC	1 cut(s)	395
AspS9I	GGNCC	8 cut(s)	248, 292, 293, 308, 474, 509, 833, 1160
AsuC2I	CCSGG	3 cut(s)	348, 366, 512
AsuHPI	GGTGA	4 cut(s)	186, 409, 1277, 1283
AvaII	GGWCC	4 cut(s)	248, 474, 833, 1160
BaeGI	GKGCMC	1 cut(s)	296
BanI	GGYRCC	2 cut(s)	392, 1494
BanII	GRGCYC	3 cut(s)	38, 296, 1437
BarI	GAAGNNNNNNTAC	2 cut(s)	365, 397
BbrPI	CACGTG	1 cut(s)	190
BbsI	GAAGAC	2 cut(s)	99, 1088
Bbv12I	GWGCWC	2 cut(s)	1051, 1437
BbvI	GCAGC	4 cut(s)	334, 812, 815, 818
BccI	CCATC	3 cut(s)	496, 1070, 1293
BceAI	ACGGC	3 cut(s)	380, 406, 407
BciT130I	CCWGG	1 cut(s)	319
BcnI	CCSGG	3 cut(s)	348, 366, 512
BcoDI	GTCTC	2 cut(s)	69, 650
BfaI	CTAG	3 cut(s)	216, 564, 1206
BfmI	CTRYAG	2 cut(s)	1426, 1500
BfoI	RGCGCY	1 cut(s)	396
BfuAI	ACCTGC	1 cut(s)	1358
BisI	GCNGC	8 cut(s)	236, 254, 257, 323, 338, 801, 804, 807
BlsI	GCNGC	8 cut(s)	237, 255, 258, 324, 339, 802, 805, 808
Bme1390I	CCNGG	4 cut(s)	319, 348, 366, 512
Bme18I	GGWCC	4 cut(s)	248, 474, 833, 1160
BmgBI	CACGTC	2 cut(s)	280, 415
BmgT120I	GGNCC	8 cut(s)	248, 292, 293, 308, 474, 509, 833, 1160
BmiI	GGNNCC	6 cut(s)	35, 294, 394, 476, 1104, 1496
BmrFI	CCNGG	4 cut(s)	319, 348, 366, 512
BmrI	ACTGGG	3 cut(s)	299, 1009, 1347
BmsI	GCATC	8 cut(s)	150, 781, 961, 1166, 1225, 1426, 1533, 1547
BmuI	ACTGGG	3 cut(s)	299, 1009, 1347
BpiI	GAAGAC	2 cut(s)	99, 1088
BpuEI	CTTGAG	2 cut(s)	419, 1299
BpuMI	CCSGG	3 cut(s)	348, 366, 512
Bsa29I	ATCGAT	2 cut(s)	608, 1541
BsaAI	YACGTR	1 cut(s)	190
BsaHI	GRCGYC	1 cut(s)	393
BsaJI	CCNNGG	4 cut(s)	317, 346, 365, 1023
BsaWI	WCCGGW	2 cut(s)	23, 1293
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bse118I	RCCGGY	2 cut(s)	1132, 1330
Bse1I	ACTGG	6 cut(s)	294, 755, 773, 1004, 1342, 1496
BseBI	CCWGG	1 cut(s)	319
BseCI	ATCGAT	2 cut(s)	608, 1541
BseDI	CCNNGG	4 cut(s)	317, 346, 365, 1023
BseGI	GGATG	5 cut(s)	261, 682, 796, 1181, 1381
BseMII	CTCAG	1 cut(s)	1121
BseNI	ACTGG	6 cut(s)	294, 755, 773, 1004, 1342, 1496
BseRI	GAGGAG	5 cut(s)	102, 216, 317, 1041, 1095
BseSI	GKGCMC	1 cut(s)	296
BseXI	GCAGC	4 cut(s)	334, 812, 815, 818
Bsh1285I	CGRYCG	1 cut(s)	355
BshFI	GGCC	7 cut(s)	294, 309, 492, 510, 562, 873, 1363
BshNI	GGYRCC	2 cut(s)	392, 1494
BshVI	ATCGAT	2 cut(s)	608, 1541
BsiEI	CGRYCG	1 cut(s)	355
BsiHKAI	GWGCWC	2 cut(s)	1051, 1437
BsiSI	CCGG	8 cut(s)	24, 246, 348, 365, 512, 1133, 1294, 1331
BslFI	GGGAC	2 cut(s)	460, 1391
BsmAI	GTCTC	2 cut(s)	69, 650
BsmFI	GGGAC	2 cut(s)	460, 1391
BsmI	GAATGC	1 cut(s)	916
BsnI	GGCC	7 cut(s)	294, 309, 492, 510, 562, 873, 1363
Bsp120I	GGGCCC	1 cut(s)	292
Bsp1286I	GDGCHC	4 cut(s)	38, 296, 1051, 1437
Bsp1407I	TGTACA	1 cut(s)	1378
Bsp143I	GATC	1 cut(s)	1474
BspANI	GGCC	7 cut(s)	294, 309, 492, 510, 562, 873, 1363
BspCNI	CTCAG	1 cut(s)	1120
BspDI	ATCGAT	2 cut(s)	608, 1541
BspHI	TCATGA	1 cut(s)	1056
BspLI	GGNNCC	6 cut(s)	35, 294, 394, 476, 1104, 1496
BspMI	ACCTGC	1 cut(s)	1358
BspPI	GGATC	1 cut(s)	1482
BspT107I	GGYRCC	2 cut(s)	392, 1494
BsrBI	CCGCTC	1 cut(s)	259
BsrFI	RCCGGY	2 cut(s)	1132, 1330
BsrGI	TGTACA	1 cut(s)	1378
BsrI	ACTGG	6 cut(s)	294, 755, 773, 1004, 1342, 1496
BssAI	RCCGGY	2 cut(s)	1132, 1330
BssECI	CCNNGG	4 cut(s)	317, 346, 365, 1023
BssMI	GATC	1 cut(s)	1474
BssNI	GRCGYC	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	1023
Bst2UI	CCWGG	1 cut(s)	319
Bst4CI	ACNGT	3 cut(s)	902, 1427, 1508
Bst6I	CTCTTC	1 cut(s)	915
BstACI	GRCGYC	1 cut(s)	393
BstAUI	TGTACA	1 cut(s)	1378
BstBAI	YACGTR	1 cut(s)	190
BstC8I	GCNNGC	3 cut(s)	1253, 1332, 1365
BstDEI	CTNAG	3 cut(s)	1107, 1455, 1562
BstENI	CCTNNNNNAGG	1 cut(s)	1110
BstF5I	GGATG	5 cut(s)	261, 682, 796, 1181, 1381
BstH2I	RGCGCY	1 cut(s)	396
BstHHI	GCGC	1 cut(s)	395
BstKTI	GATC	1 cut(s)	1477
BstMAI	GTCTC	2 cut(s)	69, 650
BstMBI	GATC	1 cut(s)	1474
BstMCI	CGRYCG	1 cut(s)	355
BstMWI	GCNNNNNNNGC	3 cut(s)	739, 800, 806
BstNI	CCWGG	1 cut(s)	319
BstNSI	RCATGY	2 cut(s)	153, 978
BstSCI	CCNGG	4 cut(s)	317, 346, 364, 510
BstSFI	CTRYAG	2 cut(s)	1426, 1500
BstSLI	GKGCMC	1 cut(s)	296
BstV1I	GCAGC	4 cut(s)	334, 812, 815, 818
BstV2I	GAAGAC	2 cut(s)	99, 1088
Bsu15I	ATCGAT	2 cut(s)	608, 1541
BsuRI	GGCC	7 cut(s)	294, 309, 492, 510, 562, 873, 1363
BsuTUI	ATCGAT	2 cut(s)	608, 1541
BtrI	CACGTC	2 cut(s)	280, 415
BtsCI	GGATG	5 cut(s)	261, 682, 796, 1181, 1381
BtsI	GCAGTG	1 cut(s)	874
BtsIMutI	CAGTG	4 cut(s)	874, 907, 927, 1423
BveI	ACCTGC	1 cut(s)	1358
Cac8I	GCNNGC	3 cut(s)	1253, 1332, 1365
CciI	TCATGA	1 cut(s)	1056
CfoI	GCGC	1 cut(s)	395
Cfr10I	RCCGGY	2 cut(s)	1132, 1330
Cfr13I	GGNCC	8 cut(s)	248, 292, 293, 308, 474, 509, 833, 1160
ClaI	ATCGAT	2 cut(s)	608, 1541
CpoI	CGGWCCG	1 cut(s)	248
Csp6I	GTAC	6 cut(s)	599, 664, 709, 997, 1379, 1439
CspI	CGGWCCG	1 cut(s)	248
CviAII	CATG	9 cut(s)	150, 449, 787, 954, 975, 1057, 1182, 1555, 1576
CviQI	GTAC	6 cut(s)	599, 664, 709, 997, 1379, 1439
DdeI	CTNAG	3 cut(s)	1107, 1455, 1562
DinI	GGCGCC	1 cut(s)	394
DpnI	GATC	1 cut(s)	1476
DpnII	GATC	1 cut(s)	1474
Eam1104I	CTCTTC	1 cut(s)	915
EarI	CTCTTC	1 cut(s)	915
Ecl136II	GAGCTC	1 cut(s)	1435
Eco130I	CCWWGG	1 cut(s)	1023
Eco147I	AGGCCT	2 cut(s)	492, 562
Eco24I	GRGCYC	3 cut(s)	38, 296, 1437
Eco32I	GATATC	1 cut(s)	1522
Eco47I	GGWCC	4 cut(s)	248, 474, 833, 1160
Eco53kI	GAGCTC	1 cut(s)	1435
Eco57I	CTGAAG	1 cut(s)	1260
Eco72I	CACGTG	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	1435
EcoNI	CCTNNNNNAGG	1 cut(s)	1110
EcoO109I	RGGNCCY	1 cut(s)	833
EcoRI	GAATTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	317
EcoRV	GATATC	1 cut(s)	1522
EcoT14I	CCWWGG	1 cut(s)	1023
EcoT22I	ATGCAT	2 cut(s)	796, 976
EcoT38I	GRGCYC	3 cut(s)	38, 296, 1437
EgeI	GGCGCC	1 cut(s)	394
EheI	GGCGCC	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	1023
FaeI	CATG	9 cut(s)	153, 452, 790, 957, 978, 1060, 1185, 1558, 1579
FalI	AAGNNNNNCTT	6 cut(s)	428, 460, 1022, 1054, 1395, 1427
FaqI	GGGAC	2 cut(s)	460, 1391
FatI	CATG	9 cut(s)	149, 448, 786, 953, 974, 1056, 1181, 1554, 1575
FauI	CCCGC	1 cut(s)	145
FblI	GTMKAC	2 cut(s)	355, 1503
Fnu4HI	GCNGC	8 cut(s)	236, 254, 257, 323, 338, 801, 804, 807
FokI	GGATG	5 cut(s)	248, 689, 803, 1188, 1388
FriOI	GRGCYC	3 cut(s)	38, 296, 1437
Fsp4HI	GCNGC	8 cut(s)	236, 254, 257, 323, 338, 801, 804, 807
FspBI	CTAG	3 cut(s)	216, 564, 1206
GlaI	GCGC	1 cut(s)	394
GluI	GCNGC	8 cut(s)	236, 254, 257, 323, 338, 801, 804, 807
HaeII	RGCGCY	1 cut(s)	396
HaeIII	GGCC	7 cut(s)	294, 309, 492, 510, 562, 873, 1363
HapII	CCGG	8 cut(s)	24, 246, 348, 365, 512, 1133, 1294, 1331
HhaI	GCGC	1 cut(s)	395
Hin1I	GRCGYC	1 cut(s)	393
Hin1II	CATG	9 cut(s)	153, 452, 790, 957, 978, 1060, 1185, 1558, 1579
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HincII	GTYRAC	1 cut(s)	356
HindII	GTYRAC	1 cut(s)	356
HindIII	AAGCTT	2 cut(s)	1122, 1242
HinfI	GANTC	5 cut(s)	171, 515, 636, 716, 1570
HpaII	CCGG	8 cut(s)	24, 246, 348, 365, 512, 1133, 1294, 1331
HphI	GGTGA	4 cut(s)	186, 409, 1277, 1283
Hpy166II	GTNNAC	3 cut(s)	356, 1291, 1504
Hpy188I	TCNGA	6 cut(s)	33, 266, 501, 993, 1479, 1486
Hpy188III	TCNNGA	5 cut(s)	402, 1057, 1070, 1113, 1373
Hpy8I	GTNNAC	3 cut(s)	356, 1291, 1504
Hpy99I	CGWCG	1 cut(s)	284
HpyCH4III	ACNGT	3 cut(s)	902, 1427, 1508
HpyCH4IV	ACGT	4 cut(s)	189, 279, 414, 544
HpyCH4V	TGCA	9 cut(s)	587, 614, 645, 694, 794, 916, 957, 974, 1417
HpyF10VI	GCNNNNNNNGC	3 cut(s)	739, 800, 806
HpyF3I	CTNAG	3 cut(s)	1107, 1455, 1562
HpySE526I	ACGT	4 cut(s)	189, 279, 414, 544
Hsp92I	GRCGYC	1 cut(s)	393
Hsp92II	CATG	9 cut(s)	153, 452, 790, 957, 978, 1060, 1185, 1558, 1579
HspAI	GCGC	1 cut(s)	393
KasI	GGCGCC	1 cut(s)	392
KroI	GCCGGC	1 cut(s)	1330
KroNI	GCCGGC	1 cut(s)	1332
Kzo9I	GATC	1 cut(s)	1474
LmnI	GCTCC	5 cut(s)	33, 330, 1054, 1108, 1227
Lsp1109I	GCAGC	4 cut(s)	334, 812, 815, 818
LweI	GCATC	8 cut(s)	150, 781, 961, 1166, 1225, 1426, 1533, 1547
MaeI	CTAG	3 cut(s)	216, 564, 1206
MaeII	ACGT	4 cut(s)	189, 279, 414, 544
MaeIII	GTNAC	5 cut(s)	50, 175, 192, 415, 1265
MalI	GATC	1 cut(s)	1476
MbiI	CCGCTC	1 cut(s)	259
MboI	GATC	1 cut(s)	1474
MboII	GAAGA	8 cut(s)	104, 112, 180, 382, 385, 900, 902, 1093
MfeI	CAATTG	2 cut(s)	519, 1257
MhlI	GDGCHC	4 cut(s)	38, 296, 1051, 1437
MluCI	AATT	8 cut(s)	27, 519, 624, 749, 839, 1041, 1190, 1257
Mly113I	GGCGCC	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	710
MmeI	TCCRAC	1 cut(s)	1547
Mph1103I	ATGCAT	2 cut(s)	796, 976
MroNI	GCCGGC	1 cut(s)	1330
MseI	TTAA	3 cut(s)	80, 881, 1040
MslI	CAYNNNNRTG	2 cut(s)	266, 1061
MspI	CCGG	8 cut(s)	24, 246, 348, 365, 512, 1133, 1294, 1331
MspR9I	CCNGG	4 cut(s)	319, 348, 366, 512
MunI	CAATTG	2 cut(s)	519, 1257
Mva1269I	GAATGC	1 cut(s)	916
MvaI	CCWGG	1 cut(s)	319
MwoI	GCNNNNNNNGC	3 cut(s)	739, 800, 806
NaeI	GCCGGC	1 cut(s)	1332
NarI	GGCGCC	1 cut(s)	393
NciI	CCSGG	3 cut(s)	348, 366, 512
NdeII	GATC	1 cut(s)	1474
NgoMIV	GCCGGC	1 cut(s)	1330
NlaIII	CATG	9 cut(s)	153, 452, 790, 957, 978, 1060, 1185, 1558, 1579
NlaIV	GGNNCC	6 cut(s)	35, 294, 394, 476, 1104, 1496
NmuCI	GTSAC	4 cut(s)	50, 192, 415, 1265
NsiI	ATGCAT	2 cut(s)	796, 976
NspI	RCATGY	2 cut(s)	153, 978
PagI	TCATGA	1 cut(s)	1056
PceI	AGGCCT	2 cut(s)	492, 562
PciI	ACATGT	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	1 cut(s)	420
PctI	GAATGC	1 cut(s)	916
PdiI	GCCGGC	1 cut(s)	1332
PfeI	GAWTC	4 cut(s)	171, 515, 636, 1570
PkrI	GCNGC	8 cut(s)	237, 255, 258, 324, 339, 802, 805, 808
PleI	GAGTC	1 cut(s)	710
PluTI	GGCGCC	1 cut(s)	396
PmaCI	CACGTG	1 cut(s)	190
PmlI	CACGTG	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	710
Ppu21I	YACGTR	1 cut(s)	190
PpuMI	RGGWCCY	1 cut(s)	833
PscI	ACATGT	1 cut(s)	149
Psp124BI	GAGCTC	1 cut(s)	1437
Psp5II	RGGWCCY	1 cut(s)	833
Psp6I	CCWGG	1 cut(s)	317
PspCI	CACGTG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	317
PspN4I	GGNNCC	6 cut(s)	35, 294, 394, 476, 1104, 1496
PspOMI	GGGCCC	1 cut(s)	292
PspPI	GGNCC	8 cut(s)	248, 292, 293, 308, 474, 509, 833, 1160
PspPPI	RGGWCCY	1 cut(s)	833
RsaI	GTAC	6 cut(s)	600, 665, 710, 998, 1380, 1440
RsaNI	GTAC	6 cut(s)	599, 664, 709, 997, 1379, 1439
RseI	CAYNNNNRTG	2 cut(s)	266, 1061
Rsr2I	CGGWCCG	1 cut(s)	248
RsrII	CGGWCCG	1 cut(s)	248
SacI	GAGCTC	1 cut(s)	1437
SalI	GTCGAC	1 cut(s)	354
SaqAI	TTAA	3 cut(s)	80, 881, 1040
SatI	GCNGC	8 cut(s)	236, 254, 257, 323, 338, 801, 804, 807
Sau3AI	GATC	1 cut(s)	1474
Sau96I	GGNCC	8 cut(s)	248, 292, 293, 308, 474, 509, 833, 1160
SchI	GAGTC	1 cut(s)	710
ScrFI	CCNGG	4 cut(s)	319, 348, 366, 512
SduI	GDGCHC	4 cut(s)	38, 296, 1051, 1437
SfaNI	GCATC	8 cut(s)	150, 781, 961, 1166, 1225, 1426, 1533, 1547
SfcI	CTRYAG	2 cut(s)	1426, 1500
SfoI	GGCGCC	1 cut(s)	394
SinI	GGWCC	4 cut(s)	248, 474, 833, 1160
SmiMI	CAYNNNNRTG	2 cut(s)	266, 1061
SmlI	CTYRAG	2 cut(s)	434, 1314
SmoI	CTYRAG	2 cut(s)	434, 1314
Sse9I	AATT	8 cut(s)	27, 519, 624, 749, 839, 1041, 1190, 1257
SseBI	AGGCCT	2 cut(s)	492, 562
SspDI	GGCGCC	1 cut(s)	392
SspI	AATATT	2 cut(s)	106, 1450
SspMI	CTAG	3 cut(s)	216, 564, 1206
SstI	GAGCTC	1 cut(s)	1437
StuI	AGGCCT	2 cut(s)	492, 562
StyD4I	CCNGG	4 cut(s)	317, 346, 364, 510
StyI	CCWWGG	1 cut(s)	1023
TaaI	ACNGT	3 cut(s)	902, 1427, 1508
TaiI	ACGT	4 cut(s)	192, 282, 417, 547
TaqI	TCGA	6 cut(s)	272, 355, 608, 639, 1320, 1541
TaqII	GACCGA	1 cut(s)	462
TasI	AATT	8 cut(s)	27, 519, 624, 749, 839, 1041, 1190, 1257
TatI	WGTACW	2 cut(s)	708, 1378
TauI	GCSGC	4 cut(s)	238, 256, 259, 340
TfiI	GAWTC	4 cut(s)	171, 515, 636, 1570
Tru1I	TTAA	3 cut(s)	80, 881, 1040
Tru9I	TTAA	3 cut(s)	80, 881, 1040
TscAI	CASTG	4 cut(s)	874, 907, 934, 1430
TseFI	GTSAC	4 cut(s)	50, 192, 415, 1265
TseI	GCWGC	4 cut(s)	322, 800, 803, 806
Tsp45I	GTSAC	4 cut(s)	50, 192, 415, 1265
TspDTI	ATGAA	5 cut(s)	836, 843, 1073, 1220, 1571
TspGWI	ACGGA	2 cut(s)	114, 1214
TspRI	CASTG	4 cut(s)	874, 907, 934, 1430
VpaK11BI	GGWCC	4 cut(s)	248, 474, 833, 1160
XagI	CCTNNNNNAGG	1 cut(s)	1110
XapI	RAATTY	2 cut(s)	27, 624
XceI	RCATGY	2 cut(s)	153, 978
XmiI	GTMKAC	2 cut(s)	355, 1503
XspI	CTAG	3 cut(s)	216, 564, 1206
Zsp2I	ATGCAT	2 cut(s)	796, 976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.