RNA pseudourine synthase 3
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Glyco_hydro_1 | PF00232 | 3 - 451 | 4e-142 | Glycosyl hydrolase family 1 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 857 |
| AccII | CGCG | 1 cut(s) | 374 |
| AciI | CCGC | 3 cut(s) | 365, 374, 592 |
| AclWI | GGATC | 3 cut(s) | 105, 872, 1145 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 5 cut(s) | 145, 283, 377, 520, 938 |
| AcuI | CTGAAG | 1 cut(s) | 1190 |
| AfaI | GTAC | 5 cut(s) | 199, 653, 1005, 1019, 1034 |
| AflIII | ACRYGT | 1 cut(s) | 870 |
| AgsI | TTSAA | 5 cut(s) | 388, 427, 1238, 1260, 1330 |
| AjnI | CCWGG | 1 cut(s) | 55 |
| AluBI | AGCT | 6 cut(s) | 497, 515, 575, 692, 863, 1155 |
| AluI | AGCT | 6 cut(s) | 497, 515, 575, 692, 863, 1155 |
| Alw21I | GWGCWC | 1 cut(s) | 491 |
| Alw26I | GTCTC | 1 cut(s) | 393 |
| AlwI | GGATC | 3 cut(s) | 105, 872, 1145 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 530, 578 |
| AoxI | GGCC | 1 cut(s) | 3 |
| ApeKI | GCWGC | 6 cut(s) | 446, 545, 572, 575, 689, 787 |
| ApoI | RAATTY | 5 cut(s) | 145, 283, 377, 520, 938 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 15, 47 |
| AspA2I | CCTAGG | 1 cut(s) | 974 |
| AspS9I | GGNCC | 3 cut(s) | 23, 177, 971 |
| AsuC2I | CCSGG | 1 cut(s) | 1095 |
| AsuHPI | GGTGA | 4 cut(s) | 98, 364, 832, 1279 |
| AvaII | GGWCC | 3 cut(s) | 23, 177, 971 |
| AvrII | CCTAGG | 1 cut(s) | 974 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 30, 63 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanII | GRGCYC | 1 cut(s) | 830 |
| BbsI | GAAGAC | 1 cut(s) | 126 |
| Bbv12I | GWGCWC | 1 cut(s) | 491 |
| BbvI | GCAGC | 6 cut(s) | 433, 532, 562, 584, 701, 774 |
| BccI | CCATC | 4 cut(s) | 188, 714, 811, 817 |
| BceAI | ACGGC | 1 cut(s) | 1096 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 745, 779 |
| BciT130I | CCWGG | 1 cut(s) | 57 |
| BciVI | GTATCC | 3 cut(s) | 31, 762, 908 |
| BcnI | CCSGG | 1 cut(s) | 1095 |
| BcoDI | GTCTC | 1 cut(s) | 393 |
| BfaI | CTAG | 4 cut(s) | 27, 308, 435, 975 |
| BfmI | CTRYAG | 1 cut(s) | 1147 |
| BfuI | GTATCC | 3 cut(s) | 31, 762, 908 |
| BisI | GCNGC | 6 cut(s) | 447, 546, 573, 576, 690, 788 |
| BlnI | CCTAGG | 1 cut(s) | 974 |
| BlsI | GCNGC | 6 cut(s) | 448, 547, 574, 577, 691, 789 |
| Bme1390I | CCNGG | 2 cut(s) | 57, 1095 |
| Bme18I | GGWCC | 3 cut(s) | 23, 177, 971 |
| BmgT120I | GGNCC | 3 cut(s) | 23, 177, 971 |
| BmiI | GGNNCC | 2 cut(s) | 1055, 1192 |
| BmrFI | CCNGG | 2 cut(s) | 57, 1095 |
| BmrI | ACTGGG | 1 cut(s) | 210 |
| BmsI | GCATC | 3 cut(s) | 142, 855, 1054 |
| BmuI | ACTGGG | 1 cut(s) | 210 |
| BpiI | GAAGAC | 1 cut(s) | 126 |
| BpmI | CTGGAG | 1 cut(s) | 1181 |
| BpuEI | CTTGAG | 2 cut(s) | 335, 1280 |
| BpuMI | CCSGG | 1 cut(s) | 1095 |
| BsaAI | YACGTR | 1 cut(s) | 871 |
| BsaBI | GATNNNNATC | 3 cut(s) | 102, 156, 882 |
| BsaJI | CCNNGG | 5 cut(s) | 55, 909, 974, 1007, 1093 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 390, 420, 1182, 1212, 1234, 1264 |
| Bse1I | ACTGG | 4 cut(s) | 205, 419, 853, 932 |
| Bse3DI | GCAATG | 3 cut(s) | 540, 1118, 1220 |
| Bse8I | GATNNNNATC | 3 cut(s) | 102, 156, 882 |
| BseBI | CCWGG | 1 cut(s) | 57 |
| BseDI | CCNNGG | 5 cut(s) | 55, 909, 974, 1007, 1093 |
| BseGI | GGATG | 2 cut(s) | 725, 730 |
| BseJI | GATNNNNATC | 3 cut(s) | 102, 156, 882 |
| BseMI | GCAATG | 3 cut(s) | 540, 1118, 1220 |
| BseMII | CTCAG | 1 cut(s) | 522 |
| BseNI | ACTGG | 4 cut(s) | 205, 419, 853, 932 |
| BseRI | GAGGAG | 1 cut(s) | 821 |
| BseXI | GCAGC | 6 cut(s) | 433, 532, 562, 584, 701, 774 |
| BseYI | CCCAGC | 1 cut(s) | 515 |
| Bsh1236I | CGCG | 1 cut(s) | 374 |
| BshFI | GGCC | 1 cut(s) | 5 |
| BsiHKAI | GWGCWC | 1 cut(s) | 491 |
| BsiSI | CCGG | 2 cut(s) | 479, 1095 |
| BsmAI | GTCTC | 1 cut(s) | 393 |
| BsmI | GAATGC | 1 cut(s) | 937 |
| BsnI | GGCC | 1 cut(s) | 5 |
| Bsp1286I | GDGCHC | 2 cut(s) | 491, 830 |
| Bsp1407I | TGTACA | 1 cut(s) | 1017 |
| Bsp143I | GATC | 5 cut(s) | 97, 298, 668, 877, 1137 |
| Bsp19I | CCATGG | 1 cut(s) | 1007 |
| BspACI | CCGC | 3 cut(s) | 365, 374, 592 |
| BspANI | GGCC | 1 cut(s) | 5 |
| BspCNI | CTCAG | 1 cut(s) | 523 |
| BspFNI | CGCG | 1 cut(s) | 374 |
| BspLI | GGNNCC | 2 cut(s) | 1055, 1192 |
| BspPI | GGATC | 3 cut(s) | 105, 872, 1145 |
| BsrDI | GCAATG | 3 cut(s) | 540, 1118, 1220 |
| BsrGI | TGTACA | 1 cut(s) | 1017 |
| BsrI | ACTGG | 4 cut(s) | 205, 419, 853, 932 |
| BssECI | CCNNGG | 5 cut(s) | 55, 909, 974, 1007, 1093 |
| BssMI | GATC | 5 cut(s) | 97, 298, 668, 877, 1137 |
| BssNAI | GTATAC | 1 cut(s) | 858 |
| BssT1I | CCWWGG | 3 cut(s) | 909, 974, 1007 |
| Bst1107I | GTATAC | 1 cut(s) | 858 |
| Bst2UI | CCWGG | 1 cut(s) | 57 |
| Bst4CI | ACNGT | 3 cut(s) | 94, 110, 486 |
| Bst6I | CTCTTC | 1 cut(s) | 1113 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 941 |
| BstAUI | TGTACA | 1 cut(s) | 1017 |
| BstBAI | YACGTR | 1 cut(s) | 871 |
| BstDEI | CTNAG | 2 cut(s) | 531, 792 |
| BstDSI | CCRYGG | 1 cut(s) | 1007 |
| BstF5I | GGATG | 2 cut(s) | 725, 730 |
| BstFNI | CGCG | 1 cut(s) | 374 |
| BstKTI | GATC | 5 cut(s) | 100, 301, 671, 880, 1140 |
| BstMAI | GTCTC | 1 cut(s) | 393 |
| BstMBI | GATC | 5 cut(s) | 97, 298, 668, 877, 1137 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 371, 698, 941 |
| BstNI | CCWGG | 1 cut(s) | 57 |
| BstNSI | RCATGY | 1 cut(s) | 572 |
| BstSCI | CCNGG | 2 cut(s) | 55, 1093 |
| BstSFI | CTRYAG | 1 cut(s) | 1147 |
| BstUI | CGCG | 1 cut(s) | 374 |
| BstV1I | GCAGC | 6 cut(s) | 433, 532, 562, 584, 701, 774 |
| BstV2I | GAAGAC | 1 cut(s) | 126 |
| BstZ17I | GTATAC | 1 cut(s) | 858 |
| BsuI | GTATCC | 3 cut(s) | 31, 762, 908 |
| BsuRI | GGCC | 1 cut(s) | 5 |
| BtgI | CCRYGG | 1 cut(s) | 1007 |
| BtsCI | GGATG | 2 cut(s) | 725, 730 |
| BtsIMutI | CAGTG | 1 cut(s) | 99 |
| CaiI | CAGNNNCTG | 2 cut(s) | 530, 578 |
| Cfr13I | GGNCC | 3 cut(s) | 23, 177, 971 |
| Csp6I | GTAC | 5 cut(s) | 198, 652, 1004, 1018, 1033 |
| CviAII | CATG | 7 cut(s) | 133, 174, 569, 713, 1008, 1049, 1084 |
| CviQI | GTAC | 5 cut(s) | 198, 652, 1004, 1018, 1033 |
| DdeI | CTNAG | 2 cut(s) | 531, 792 |
| DpnI | GATC | 5 cut(s) | 99, 300, 670, 879, 1139 |
| DpnII | GATC | 5 cut(s) | 97, 298, 668, 877, 1137 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 1 cut(s) | 1113 |
| EarI | CTCTTC | 1 cut(s) | 1113 |
| Eco130I | CCWWGG | 3 cut(s) | 909, 974, 1007 |
| Eco24I | GRGCYC | 1 cut(s) | 830 |
| Eco32I | GATATC | 1 cut(s) | 130 |
| Eco47I | GGWCC | 3 cut(s) | 23, 177, 971 |
| Eco57I | CTGAAG | 1 cut(s) | 1190 |
| EcoRI | GAATTC | 1 cut(s) | 520 |
| EcoRII | CCWGG | 1 cut(s) | 55 |
| EcoRV | GATATC | 1 cut(s) | 130 |
| EcoT14I | CCWWGG | 3 cut(s) | 909, 974, 1007 |
| EcoT38I | GRGCYC | 1 cut(s) | 830 |
| ErhI | CCWWGG | 3 cut(s) | 909, 974, 1007 |
| FaeI | CATG | 7 cut(s) | 136, 177, 572, 716, 1011, 1052, 1087 |
| FatI | CATG | 7 cut(s) | 132, 173, 568, 712, 1007, 1048, 1083 |
| FblI | GTMKAC | 1 cut(s) | 857 |
| Fnu4HI | GCNGC | 6 cut(s) | 447, 546, 573, 576, 690, 788 |
| FokI | GGATG | 2 cut(s) | 717, 732 |
| FriOI | GRGCYC | 1 cut(s) | 830 |
| Fsp4HI | GCNGC | 6 cut(s) | 447, 546, 573, 576, 690, 788 |
| FspBI | CTAG | 4 cut(s) | 27, 308, 435, 975 |
| GluI | GCNGC | 6 cut(s) | 447, 546, 573, 576, 690, 788 |
| GsaI | CCCAGC | 1 cut(s) | 519 |
| GsuI | CTGGAG | 1 cut(s) | 1181 |
| HaeIII | GGCC | 1 cut(s) | 5 |
| HapII | CCGG | 2 cut(s) | 479, 1095 |
| Hin1II | CATG | 7 cut(s) | 136, 177, 572, 716, 1011, 1052, 1087 |
| HincII | GTYRAC | 2 cut(s) | 420, 1282 |
| HindII | GTYRAC | 2 cut(s) | 420, 1282 |
| HindIII | AAGCTT | 1 cut(s) | 495 |
| HinfI | GANTC | 3 cut(s) | 183, 405, 1105 |
| HpaII | CCGG | 2 cut(s) | 479, 1095 |
| HphI | GGTGA | 4 cut(s) | 98, 364, 832, 1279 |
| Hpy166II | GTNNAC | 5 cut(s) | 23, 420, 798, 858, 1282 |
| Hpy188I | TCNGA | 4 cut(s) | 585, 606, 756, 1075 |
| Hpy188III | TCNNGA | 7 cut(s) | 180, 388, 409, 525, 1160, 1297, 1330 |
| Hpy8I | GTNNAC | 5 cut(s) | 23, 420, 798, 858, 1282 |
| HpyAV | CCTTC | 4 cut(s) | 8, 349, 1168, 1330 |
| HpyCH4III | ACNGT | 3 cut(s) | 94, 110, 486 |
| HpyCH4IV | ACGT | 2 cut(s) | 870, 1031 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 371, 698, 941 |
| HpyF3I | CTNAG | 2 cut(s) | 531, 792 |
| HpySE526I | ACGT | 2 cut(s) | 870, 1031 |
| Hsp92II | CATG | 7 cut(s) | 136, 177, 572, 716, 1011, 1052, 1087 |
| Kzo9I | GATC | 5 cut(s) | 97, 298, 668, 877, 1137 |
| LmnI | GCTCC | 4 cut(s) | 481, 494, 1162, 1190 |
| Lsp1109I | GCAGC | 6 cut(s) | 433, 532, 562, 584, 701, 774 |
| LweI | GCATC | 3 cut(s) | 142, 855, 1054 |
| MaeI | CTAG | 4 cut(s) | 27, 308, 435, 975 |
| MaeII | ACGT | 2 cut(s) | 870, 1031 |
| MaeIII | GTNAC | 5 cut(s) | 88, 110, 341, 564, 1250 |
| MalI | GATC | 5 cut(s) | 99, 300, 670, 879, 1139 |
| MboI | GATC | 5 cut(s) | 97, 298, 668, 877, 1137 |
| MboII | GAAGA | 5 cut(s) | 131, 178, 293, 1100, 1183 |
| MfeI | CAATTG | 1 cut(s) | 735 |
| MhlI | GDGCHC | 2 cut(s) | 491, 830 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 9 cut(s) | 145, 211, 243, 283, 377, 505, 520, 735, 938 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 2 cut(s) | 414, 1099 |
| MmeI | TCCRAC | 1 cut(s) | 697 |
| MnlI | CCTC | 6 cut(s) | 257, 669, 799, 802, 1180, 1304 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 6 cut(s) | 48, 242, 246, 258, 338, 813 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspA1I | CMGCKG | 2 cut(s) | 515, 575 |
| MspI | CCGG | 2 cut(s) | 479, 1095 |
| MspR9I | CCNGG | 2 cut(s) | 57, 1095 |
| MunI | CAATTG | 1 cut(s) | 735 |
| Mva1269I | GAATGC | 1 cut(s) | 937 |
| MvaI | CCWGG | 1 cut(s) | 57 |
| MvnI | CGCG | 1 cut(s) | 374 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 371, 698, 941 |
| NciI | CCSGG | 1 cut(s) | 1095 |
| NcoI | CCATGG | 1 cut(s) | 1007 |
| NdeII | GATC | 5 cut(s) | 97, 298, 668, 877, 1137 |
| NlaIII | CATG | 7 cut(s) | 136, 177, 572, 716, 1011, 1052, 1087 |
| NlaIV | GGNNCC | 2 cut(s) | 1055, 1192 |
| NmuCI | GTSAC | 2 cut(s) | 341, 564 |
| NspI | RCATGY | 1 cut(s) | 572 |
| PacI | TTAATTAA | 1 cut(s) | 246 |
| PctI | GAATGC | 1 cut(s) | 937 |
| PfeI | GAWTC | 1 cut(s) | 183 |
| PflFI | GACNNNGTC | 1 cut(s) | 404 |
| PkrI | GCNGC | 6 cut(s) | 448, 547, 574, 577, 691, 789 |
| PleI | GAGTC | 2 cut(s) | 413, 1099 |
| PpsI | GAGTC | 2 cut(s) | 413, 1099 |
| Ppu21I | YACGTR | 1 cut(s) | 871 |
| Psp6I | CCWGG | 1 cut(s) | 55 |
| PspFI | CCCAGC | 1 cut(s) | 515 |
| PspGI | CCWGG | 1 cut(s) | 55 |
| PspN4I | GGNNCC | 2 cut(s) | 1055, 1192 |
| PspPI | GGNCC | 3 cut(s) | 23, 177, 971 |
| PstNI | CAGNNNCTG | 2 cut(s) | 530, 578 |
| PsyI | GACNNNGTC | 1 cut(s) | 404 |
| PvuII | CAGCTG | 2 cut(s) | 515, 575 |
| RsaI | GTAC | 5 cut(s) | 199, 653, 1005, 1019, 1034 |
| RsaNI | GTAC | 5 cut(s) | 198, 652, 1004, 1018, 1033 |
| SaqAI | TTAA | 6 cut(s) | 48, 242, 246, 258, 338, 813 |
| SatI | GCNGC | 6 cut(s) | 447, 546, 573, 576, 690, 788 |
| Sau3AI | GATC | 5 cut(s) | 97, 298, 668, 877, 1137 |
| Sau96I | GGNCC | 3 cut(s) | 23, 177, 971 |
| SchI | GAGTC | 2 cut(s) | 414, 1099 |
| ScrFI | CCNGG | 2 cut(s) | 57, 1095 |
| SduI | GDGCHC | 2 cut(s) | 491, 830 |
| SfaNI | GCATC | 3 cut(s) | 142, 855, 1054 |
| SfcI | CTRYAG | 1 cut(s) | 1147 |
| SinI | GGWCC | 3 cut(s) | 23, 177, 971 |
| SmlI | CTYRAG | 2 cut(s) | 314, 1295 |
| SmoI | CTYRAG | 2 cut(s) | 314, 1295 |
| Sse9I | AATT | 9 cut(s) | 145, 211, 243, 283, 377, 505, 520, 735, 938 |
| SsiI | CCGC | 3 cut(s) | 365, 374, 592 |
| SspI | AATATT | 1 cut(s) | 772 |
| SspMI | CTAG | 4 cut(s) | 27, 308, 435, 975 |
| StyD4I | CCNGG | 2 cut(s) | 55, 1093 |
| StyI | CCWWGG | 3 cut(s) | 909, 974, 1007 |
| TaaI | ACNGT | 3 cut(s) | 94, 110, 486 |
| TaiI | ACGT | 2 cut(s) | 873, 1034 |
| TaqI | TCGA | 1 cut(s) | 1227 |
| TasI | AATT | 9 cut(s) | 145, 211, 243, 283, 377, 505, 520, 735, 938 |
| TatI | WGTACW | 1 cut(s) | 1017 |
| TfiI | GAWTC | 1 cut(s) | 183 |
| Tru1I | TTAA | 6 cut(s) | 48, 242, 246, 258, 338, 813 |
| Tru9I | TTAA | 6 cut(s) | 48, 242, 246, 258, 338, 813 |
| TscAI | CASTG | 1 cut(s) | 99 |
| TseFI | GTSAC | 2 cut(s) | 341, 564 |
| TseI | GCWGC | 6 cut(s) | 446, 545, 572, 575, 689, 787 |
| Tsp45I | GTSAC | 2 cut(s) | 341, 564 |
| TspDTI | ATGAA | 3 cut(s) | 701, 715, 719 |
| TspRI | CASTG | 1 cut(s) | 99 |
| Tth111I | GACNNNGTC | 1 cut(s) | 404 |
| VpaK11BI | GGWCC | 3 cut(s) | 23, 177, 971 |
| XapI | RAATTY | 5 cut(s) | 145, 283, 377, 520, 938 |
| XceI | RCATGY | 1 cut(s) | 572 |
| XmaJI | CCTAGG | 1 cut(s) | 974 |
| XmiI | GTMKAC | 1 cut(s) | 857 |
| XspI | CTAG | 4 cut(s) | 27, 308, 435, 975 |