Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005153

Physical Location & Seq

Genomic Coordinates Forward (+)

16882765 .. 16883858

Gene Structure 1094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G214100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCCTGCACTAGCAGTTGATCAACTTAACCAGTTAAGAGAAATCTTTGCAAGATTCGACATGGACTCAGATGGCAGCCTCACCATTTTGGAGCTCGCTGCCCTCCTCCGGTCCTTAGGCCTCAAGCCCTCAGGTGACCAAATCCATGTCTTGCTAGCCAACATGGACTCAAACGGAAATGGCTCCGTGGAATTTGATGAATTGGTCAGTGCTATATTGCCTGACATGAATGAAGAAATTTTGGGAAACCAAGAGCAACTATTGGAGGTTTTTCGGTCCTTTGATCGTGACGGTAATGGATATATAACTGCAGCAGAGCTAGCAGGGTCCATGGCCAAAATGGGTCAGCCGCTAACGTATAAGGAGCTAACAGAGATTATCAAAGAGGCTGATACAGATGGAGATGGTGTCATTAGCTTTAATGAATTTGCCACCATAATGGCAAAGTCAGCCTCAAGTTTTCTAGGCCTTGCTCCCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

161

Amino Acids

17.26

Weight (kDa)

4.12

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25600
fragaria_vesca	FvH4_4g28451
malus_domestica	MD06G1209000.v1.1 MD13G1050700.v1.1 MD14G1219400.v1.1 MD16G1051200.v1.1
prunus_persica	Prupe.1G301400_v2.0.a1 Prupe.5G214100_v2.0.a1
pyrus_communis	pycom13g04480 pycom14g18180 pycom16g04500
rosa_chinensis	RchiOBHm_Chr4g0436421 RchiOBHm_Chr7g0184291
rosa_laevigata	RLG00000004989 RLG00000006520
rosa_multiflora	Rmu_co8043624.1_g000001 Rmu_co8189102.1_g000001 Rmu_sc0013812.1_g000006
rosa_roxburghii	Rroxscaffold_3G00269760 Rroxscaffold_5G00377580
rosa_rugosa	Rorug04G0293700
rosa_samantha	Rh4AG348200 Rh4BG356800 Rh4DG350600 Rh7AG081400 Rh7BG065900 Rh7CG066200 Rh7DG066000
rosa_wichuraiana	Rw4G030430 Rw7G005400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	350
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	3 cut(s)	191, 237, 425
AfiI	CCNNNNNNNGG	1 cut(s)	108
AluBI	AGCT	4 cut(s)	94, 319, 367, 417
AluI	AGCT	4 cut(s)	94, 319, 367, 417
Alw21I	GWGCWC	1 cut(s)	96
AoxI	GGCC	3 cut(s)	118, 333, 466
ApeKI	GCWGC	3 cut(s)	75, 98, 311
ApoI	RAATTY	3 cut(s)	191, 237, 425
AspS9I	GGNCC	3 cut(s)	111, 276, 327
AsuHPI	GGTGA	2 cut(s)	73, 146
AsuNHI	GCTAGC	2 cut(s)	154, 319
AvaII	GGWCC	3 cut(s)	111, 276, 327
AxyI	CCTNAGG	2 cut(s)	115, 130
BalI	TGGCCA	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	3 cut(s)	85, 87, 323
BccI	CCATC	3 cut(s)	65, 392, 398
BclI	TGATCA	1 cut(s)	19
BfaI	CTAG	4 cut(s)	11, 155, 320, 464
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	4 cut(s)	76, 99, 312, 350
BlsI	GCNGC	4 cut(s)	77, 100, 313, 351
Bme18I	GGWCC	3 cut(s)	111, 276, 327
BmgT120I	GGNCC	3 cut(s)	111, 276, 327
BmiI	GGNNCC	2 cut(s)	184, 328
BmtI	GCTAGC	2 cut(s)	158, 323
BpuEI	CTTGAG	2 cut(s)	107, 439
BsaJI	CCNNGG	2 cut(s)	186, 330
BsaWI	WCCGGW	1 cut(s)	108
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	31
Bse21I	CCTNAGG	2 cut(s)	115, 130
BseDI	CCNNGG	2 cut(s)	186, 330
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMII	CTCAG	2 cut(s)	81, 144
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	3 cut(s)	85, 87, 323
BshFI	GGCC	3 cut(s)	120, 335, 468
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	109
BslI	CCNNNNNNNGG	1 cut(s)	108
BsnI	GGCC	3 cut(s)	120, 335, 468
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	2 cut(s)	19, 283
Bsp19I	CCATGG	1 cut(s)	330
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	3 cut(s)	120, 335, 468
BspCNI	CTCAG	2 cut(s)	80, 143
BspHI	TCATGA	1 cut(s)	479
BspLI	GGNNCC	2 cut(s)	184, 328
BspMAI	CTGCAG	1 cut(s)	313
BspOI	GCTAGC	2 cut(s)	158, 323
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	186, 330
BssMI	GATC	2 cut(s)	19, 283
BssT1I	CCWWGG	1 cut(s)	330
Bst4CI	ACNGT	1 cut(s)	293
BstC8I	GCNNGC	4 cut(s)	6, 96, 156, 321
BstDEI	CTNAG	3 cut(s)	67, 115, 130
BstDSI	CCRYGG	2 cut(s)	186, 330
BstEII	GGTNACC	1 cut(s)	134
BstKTI	GATC	2 cut(s)	22, 286
BstMBI	GATC	2 cut(s)	19, 283
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 449
BstPI	GGTNACC	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	3 cut(s)	85, 87, 323
BstXI	CCANNNNNNTGG	1 cut(s)	439
Bsu36I	CCTNAGG	2 cut(s)	115, 130
BsuRI	GGCC	3 cut(s)	120, 335, 468
BtgI	CCRYGG	2 cut(s)	186, 330
BtsIMutI	CAGTG	1 cut(s)	214
Cac8I	GCNNGC	4 cut(s)	6, 96, 156, 321
CciI	TCATGA	1 cut(s)	479
Cfr13I	GGNCC	3 cut(s)	111, 276, 327
CviAII	CATG	6 cut(s)	61, 146, 163, 226, 331, 480
DdeI	CTNAG	3 cut(s)	67, 115, 130
DpnI	GATC	2 cut(s)	21, 285
DpnII	GATC	2 cut(s)	19, 283
EaeI	YGGCCR	1 cut(s)	333
Ecl136II	GAGCTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	330
Eco147I	AGGCCT	2 cut(s)	120, 468
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	3 cut(s)	111, 276, 327
Eco53kI	GAGCTC	1 cut(s)	94
Eco81I	CCTNAGG	2 cut(s)	115, 130
Eco91I	GGTNACC	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	94
EcoO65I	GGTNACC	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	6 cut(s)	64, 149, 166, 229, 334, 483
FatI	CATG	6 cut(s)	60, 145, 162, 225, 330, 479
FbaI	TGATCA	1 cut(s)	19
Fnu4HI	GCNGC	4 cut(s)	76, 99, 312, 350
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	4 cut(s)	76, 99, 312, 350
FspBI	CTAG	4 cut(s)	11, 155, 320, 464
GluI	GCNGC	4 cut(s)	76, 99, 312, 350
HaeIII	GGCC	3 cut(s)	120, 335, 468
HapII	CCGG	1 cut(s)	109
Hin1II	CATG	6 cut(s)	64, 149, 166, 229, 334, 483
HinfI	GANTC	3 cut(s)	54, 65, 167
HpaII	CCGG	1 cut(s)	109
HphI	GGTGA	2 cut(s)	73, 146
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	2 cut(s)	287, 480
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	3 cut(s)	8, 50, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 449
HpyF3I	CTNAG	3 cut(s)	67, 115, 130
HpySE526I	ACGT	1 cut(s)	356
Hsp92II	CATG	6 cut(s)	64, 149, 166, 229, 334, 483
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	19, 283
LmnI	GCTCC	4 cut(s)	91, 188, 364, 478
LpnPI	CCDG	6 cut(s)	18, 44, 117, 122, 234, 309
Lsp1109I	GCAGC	3 cut(s)	85, 87, 323
MaeI	CTAG	4 cut(s)	11, 155, 320, 464
MaeII	ACGT	1 cut(s)	356
MaeIII	GTNAC	2 cut(s)	134, 287
MalI	GATC	2 cut(s)	21, 285
MboI	GATC	2 cut(s)	19, 283
MboII	GAAGA	1 cut(s)	245
MhlI	GDGCHC	1 cut(s)	96
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	4 cut(s)	191, 200, 237, 425
MluNI	TGGCCA	1 cut(s)	335
MlyI	GAGTC	2 cut(s)	59, 161
MnlI	CCTC	8 cut(s)	89, 113, 116, 131, 139, 259, 379, 463
Mox20I	TGGCCA	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	335
MseI	TTAA	3 cut(s)	27, 35, 420
MslI	CAYNNNNRTG	1 cut(s)	437
Msp20I	TGGCCA	1 cut(s)	335
MspI	CCGG	1 cut(s)	109
MwoI	GCNNNNNNNGC	2 cut(s)	320, 449
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	2 cut(s)	19, 283
NheI	GCTAGC	2 cut(s)	154, 319
NlaIII	CATG	6 cut(s)	64, 149, 166, 229, 334, 483
NlaIV	GGNNCC	2 cut(s)	184, 328
NmuCI	GTSAC	2 cut(s)	134, 287
PagI	TCATGA	1 cut(s)	479
PceI	AGGCCT	2 cut(s)	120, 468
PfeI	GAWTC	1 cut(s)	54
PkrI	GCNGC	4 cut(s)	77, 100, 313, 351
PleI	GAGTC	2 cut(s)	59, 161
PpsI	GAGTC	2 cut(s)	59, 161
Psp124BI	GAGCTC	1 cut(s)	96
PspEI	GGTNACC	1 cut(s)	134
PspN4I	GGNNCC	2 cut(s)	184, 328
PspPI	GGNCC	3 cut(s)	111, 276, 327
PstI	CTGCAG	1 cut(s)	313
RseI	CAYNNNNRTG	1 cut(s)	437
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	3 cut(s)	27, 35, 420
SatI	GCNGC	4 cut(s)	76, 99, 312, 350
Sau3AI	GATC	2 cut(s)	19, 283
Sau96I	GGNCC	3 cut(s)	111, 276, 327
SchI	GAGTC	2 cut(s)	59, 161
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	7 cut(s)	96, 136, 270, 321, 359, 369, 419
SfcI	CTRYAG	1 cut(s)	309
SinI	GGWCC	3 cut(s)	111, 276, 327
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	2 cut(s)	122, 454
SmoI	CTYRAG	2 cut(s)	122, 454
Sse9I	AATT	4 cut(s)	191, 200, 237, 425
SseBI	AGGCCT	2 cut(s)	120, 468
SsiI	CCGC	1 cut(s)	350
SspMI	CTAG	4 cut(s)	11, 155, 320, 464
SstI	GAGCTC	1 cut(s)	96
StuI	AGGCCT	2 cut(s)	120, 468
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	1 cut(s)	57
TaqII	GACCGA	1 cut(s)	264
TasI	AATT	4 cut(s)	191, 200, 237, 425
TauI	GCSGC	1 cut(s)	352
TfiI	GAWTC	1 cut(s)	54
Tru1I	TTAA	3 cut(s)	27, 35, 420
Tru9I	TTAA	3 cut(s)	27, 35, 420
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	2 cut(s)	134, 287
TseI	GCWGC	3 cut(s)	75, 98, 311
Tsp45I	GTSAC	2 cut(s)	134, 287
TspDTI	ATGAA	4 cut(s)	213, 242, 246, 438
TspGWI	ACGGA	2 cut(s)	175, 189
TspRI	CASTG	1 cut(s)	214
VpaK11BI	GGWCC	3 cut(s)	111, 276, 327
XapI	RAATTY	3 cut(s)	191, 237, 425
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
XspI	CTAG	4 cut(s)	11, 155, 320, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.