Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8189102.1

Orthogroup ID

OG0005153

Physical Location & Seq

Genomic Coordinates Forward (+)

156 .. 632

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8189102.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgatggctaggctcgagacagaccagctcaaacagcttaaagacatcttcatgcggttcgacatggactccgacggcagcctaacccacctggagctggccgccctgctccgctccctaggggtcaagccccagggcgaccagctccacaggttaatggccaacatggacgccaatggaaacggcgccgttgagttcgaggagttggtaaacgccatcatgccgaacatgaacgacgagattcttgtcaaccaagagcagctcatggaggtgttccggtcgttcgaccgcgacggtaacggctacataacggcggctgagctggccgggtcgatggccaagatgggccaccccttgacgtacagggagttgtcagatatgatgagggaggcggacaccaacggtgacggcgtcatcagcttcaacgagttcgccaccatcatgtctcggtccgccgctaactttctcggaatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

158

Amino Acids

17.61

Weight (kDa)

4.5

Isoelectric Point (pI)

27.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25600
fragaria_vesca	FvH4_4g28451
malus_domestica	MD06G1209000.v1.1 MD13G1050700.v1.1 MD14G1219400.v1.1 MD16G1051200.v1.1
prunus_persica	Prupe.1G301400_v2.0.a1 Prupe.5G214100_v2.0.a1
pyrus_communis	pycom13g04480 pycom14g18180 pycom16g04500
rosa_chinensis	RchiOBHm_Chr4g0436421 RchiOBHm_Chr7g0184291
rosa_laevigata	RLG00000004989 RLG00000006520
rosa_multiflora	Rmu_co8043624.1_g000001 Rmu_co8189102.1_g000001 Rmu_sc0013812.1_g000006
rosa_roxburghii	Rroxscaffold_3G00269760 Rroxscaffold_5G00377580
rosa_rugosa	Rorug04G0293700
rosa_samantha	Rh4AG348200 Rh4BG356800 Rh4DG350600 Rh7AG081400 Rh7BG065900 Rh7CG066200 Rh7DG066000
rosa_wichuraiana	Rw4G030430 Rw7G005400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	185
AccBSI	CCGCTC	1 cut(s)	114
AccII	CGCG	1 cut(s)	291
AciI	CCGC	8 cut(s)	55, 102, 112, 289, 314, 392, 453, 456
AcoI	YGGCCR	4 cut(s)	99, 159, 324, 336
AcyI	GRCGYC	3 cut(s)	171, 186, 411
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	97
AgsI	TTSAA	1 cut(s)	424
AjnI	CCWGG	2 cut(s)	90, 132
AluBI	AGCT	7 cut(s)	28, 37, 97, 145, 262, 322, 420
AluI	AGCT	7 cut(s)	28, 37, 97, 145, 262, 322, 420
Alw26I	GTCTC	2 cut(s)	11, 450
Ama87I	CYCGRG	1 cut(s)	14
AoxI	GGCC	5 cut(s)	99, 159, 324, 336, 346
ApeKI	GCWGC	2 cut(s)	78, 259
AspA2I	CCTAGG	1 cut(s)	118
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	2 cut(s)	346, 450
AsuC2I	CCSGG	1 cut(s)	328
AsuHPI	GGTGA	1 cut(s)	416
AvaI	CYCGRG	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	450
AvrII	CCTAGG	1 cut(s)	118
BalI	TGGCCA	2 cut(s)	161, 338
BanI	GGYRCC	1 cut(s)	185
BbvI	GCAGC	2 cut(s)	90, 271
BccI	CCATC	4 cut(s)	224, 328, 337, 446
BceAI	ACGGC	6 cut(s)	91, 173, 199, 316, 327, 424
BciT130I	CCWGG	2 cut(s)	92, 134
BcnI	CCSGG	1 cut(s)	328
BcoDI	GTCTC	2 cut(s)	11, 450
BfaI	CTAG	2 cut(s)	9, 119
BfoI	RGCGCY	1 cut(s)	189
BisI	GCNGC	5 cut(s)	79, 102, 260, 315, 456
BlnI	CCTAGG	1 cut(s)	118
BlpI	GCTNAGC	1 cut(s)	318
BlsI	GCNGC	5 cut(s)	80, 103, 261, 316, 457
Bme1390I	CCNGG	3 cut(s)	92, 134, 328
Bme18I	GGWCC	1 cut(s)	450
BmeT110I	CYCGRG	1 cut(s)	14
BmgT120I	GGNCC	2 cut(s)	346, 450
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	3 cut(s)	92, 134, 328
BpmI	CTGGAG	1 cut(s)	113
Bpu1102I	GCTNAGC	1 cut(s)	318
BpuMI	CCSGG	1 cut(s)	328
BsaHI	GRCGYC	3 cut(s)	171, 186, 411
BsaJI	CCNNGG	3 cut(s)	118, 132, 133
BsaWI	WCCGGW	1 cut(s)	276
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
BseBI	CCWGG	2 cut(s)	92, 134
BseDI	CCNNGG	3 cut(s)	118, 132, 133
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	309
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	2 cut(s)	90, 271
Bsh1236I	CGCG	1 cut(s)	291
Bsh1285I	CGRYCG	2 cut(s)	281, 289
BshFI	GGCC	5 cut(s)	101, 161, 326, 338, 348
BshNI	GGYRCC	1 cut(s)	185
BsiEI	CGRYCG	2 cut(s)	281, 289
BsiHKCI	CYCGRG	1 cut(s)	14
BsiSI	CCGG	2 cut(s)	277, 327
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	2 cut(s)	11, 450
BsnI	GGCC	5 cut(s)	101, 161, 326, 338, 348
BsoBI	CYCGRG	1 cut(s)	14
Bsp1720I	GCTNAGC	1 cut(s)	318
BspACI	CCGC	8 cut(s)	55, 102, 112, 289, 314, 392, 453, 456
BspANI	GGCC	5 cut(s)	101, 161, 326, 338, 348
BspCNI	CTCAG	1 cut(s)	310
BspFNI	CGCG	1 cut(s)	291
BspLI	GGNNCC	1 cut(s)	187
BspT107I	GGYRCC	1 cut(s)	185
BsrBI	CCGCTC	1 cut(s)	114
BssECI	CCNNGG	3 cut(s)	118, 132, 133
BssNI	GRCGYC	3 cut(s)	171, 186, 411
BssT1I	CCWWGG	1 cut(s)	118
Bst2UI	CCWGG	2 cut(s)	92, 134
Bst4CI	ACNGT	2 cut(s)	296, 404
BstACI	GRCGYC	3 cut(s)	171, 186, 411
BstC8I	GCNNGC	2 cut(s)	99, 324
BstDEI	CTNAG	1 cut(s)	318
BstFNI	CGCG	1 cut(s)	291
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	188
BstMAI	GTCTC	2 cut(s)	11, 450
BstMCI	CGRYCG	2 cut(s)	281, 289
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 323, 417
BstNI	CCWGG	2 cut(s)	92, 134
BstSCI	CCNGG	3 cut(s)	90, 132, 326
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	2 cut(s)	90, 271
BsuRI	GGCC	5 cut(s)	101, 161, 326, 338, 348
Cac8I	GCNNGC	2 cut(s)	99, 324
CfoI	GCGC	1 cut(s)	188
Cfr13I	GGNCC	2 cut(s)	346, 450
CpoI	CGGWCCG	1 cut(s)	450
CseI	GACGC	2 cut(s)	179, 400
Csp6I	GTAC	1 cut(s)	361
CspI	CGGWCCG	1 cut(s)	450
CviAII	CATG	7 cut(s)	52, 64, 166, 220, 229, 265, 442
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	1 cut(s)	318
DinI	GGCGCC	1 cut(s)	187
EaeI	YGGCCR	4 cut(s)	99, 159, 324, 336
EciI	GGCGGA	2 cut(s)	407, 442
Eco130I	CCWWGG	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	450
Eco88I	CYCGRG	1 cut(s)	14
EcoRII	CCWGG	2 cut(s)	90, 132
EcoT14I	CCWWGG	1 cut(s)	118
EgeI	GGCGCC	1 cut(s)	187
EheI	GGCGCC	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	118
FaeI	CATG	7 cut(s)	55, 67, 169, 223, 232, 268, 445
FaiI	YATR	9 cut(s)	53, 65, 167, 221, 230, 266, 308, 380, 443
FatI	CATG	7 cut(s)	51, 63, 165, 219, 228, 264, 441
Fnu4HI	GCNGC	5 cut(s)	79, 102, 260, 315, 456
Fsp4HI	GCNGC	5 cut(s)	79, 102, 260, 315, 456
FspBI	CTAG	2 cut(s)	9, 119
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	5 cut(s)	79, 102, 260, 315, 456
GsuI	CTGGAG	1 cut(s)	113
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	5 cut(s)	101, 161, 326, 338, 348
HapII	CCGG	2 cut(s)	277, 327
HgaI	GACGC	2 cut(s)	179, 400
HhaI	GCGC	1 cut(s)	188
Hin1I	GRCGYC	3 cut(s)	171, 186, 411
Hin1II	CATG	7 cut(s)	55, 67, 169, 223, 232, 268, 445
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	3 cut(s)	68, 241, 471
HpaII	CCGG	2 cut(s)	277, 327
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	2 cut(s)	211, 250
Hpy188I	TCNGA	4 cut(s)	73, 376, 470, 476
Hpy188III	TCNNGA	1 cut(s)	16
Hpy8I	GTNNAC	2 cut(s)	211, 250
Hpy99I	CGWCG	3 cut(s)	77, 239, 296
HpyCH4III	ACNGT	2 cut(s)	296, 404
HpyCH4IV	ACGT	1 cut(s)	359
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 323, 417
HpyF3I	CTNAG	1 cut(s)	318
HpySE526I	ACGT	1 cut(s)	359
Hsp92I	GRCGYC	3 cut(s)	171, 186, 411
Hsp92II	CATG	7 cut(s)	55, 67, 169, 223, 232, 268, 445
HspAI	GCGC	1 cut(s)	186
KasI	GGCGCC	1 cut(s)	185
LmnI	GCTCC	4 cut(s)	94, 114, 119, 150
Lsp1109I	GCAGC	2 cut(s)	90, 271
MaeI	CTAG	2 cut(s)	9, 119
MaeII	ACGT	1 cut(s)	359
MaeIII	GTNAC	2 cut(s)	296, 404
MbiI	CCGCTC	1 cut(s)	114
MboII	GAAGA	1 cut(s)	40
MlsI	TGGCCA	2 cut(s)	161, 338
MluNI	TGGCCA	2 cut(s)	161, 338
Mly113I	GGCGCC	1 cut(s)	186
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	4 cut(s)	193, 262, 378, 382
Mox20I	TGGCCA	2 cut(s)	161, 338
MscI	TGGCCA	2 cut(s)	161, 338
MseI	TTAA	2 cut(s)	39, 155
MslI	CAYNNNNRTG	3 cut(s)	50, 269, 440
Msp20I	TGGCCA	2 cut(s)	161, 338
MspI	CCGG	2 cut(s)	277, 327
MspR9I	CCNGG	3 cut(s)	92, 134, 328
MvaI	CCWGG	2 cut(s)	92, 134
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	3 cut(s)	34, 323, 417
NarI	GGCGCC	1 cut(s)	186
NciI	CCSGG	1 cut(s)	328
NlaIII	CATG	7 cut(s)	55, 67, 169, 223, 232, 268, 445
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	404
PaeR7I	CTCGAG	1 cut(s)	14
PasI	CCCWGGG	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PfeI	GAWTC	2 cut(s)	241, 471
PflFI	GACNNNGTC	1 cut(s)	410
PkrI	GCNGC	5 cut(s)	80, 103, 261, 316, 457
PleI	GAGTC	1 cut(s)	62
PluTI	GGCGCC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	62
Psp6I	CCWGG	2 cut(s)	90, 132
PspGI	CCWGG	2 cut(s)	90, 132
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	2 cut(s)	346, 450
PsyI	GACNNNGTC	1 cut(s)	410
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	3 cut(s)	50, 269, 440
Rsr2I	CGGWCCG	1 cut(s)	450
RsrII	CGGWCCG	1 cut(s)	450
SaqAI	TTAA	2 cut(s)	39, 155
SatI	GCNGC	5 cut(s)	79, 102, 260, 315, 456
Sau96I	GGNCC	2 cut(s)	346, 450
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	3 cut(s)	92, 134, 328
SfoI	GGCGCC	1 cut(s)	187
Sfr274I	CTCGAG	1 cut(s)	14
SinI	GGWCC	1 cut(s)	450
SlaI	CTCGAG	1 cut(s)	14
SmiMI	CAYNNNNRTG	3 cut(s)	50, 269, 440
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
SsiI	CCGC	8 cut(s)	55, 102, 112, 289, 314, 392, 453, 456
SspDI	GGCGCC	1 cut(s)	185
SspMI	CTAG	2 cut(s)	9, 119
StyD4I	CCNGG	3 cut(s)	90, 132, 326
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	2 cut(s)	296, 404
TaiI	ACGT	1 cut(s)	362
TaqI	TCGA	5 cut(s)	15, 60, 198, 285, 332
TaqII	GACCGA	1 cut(s)	438
TauI	GCSGC	3 cut(s)	104, 317, 458
TfiI	GAWTC	2 cut(s)	241, 471
Tru1I	TTAA	2 cut(s)	39, 155
Tru9I	TTAA	2 cut(s)	39, 155
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	2 cut(s)	78, 259
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	2 cut(s)	40, 245
Tth111I	GACNNNGTC	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	450
XhoI	CTCGAG	1 cut(s)	14
XmaJI	CCTAGG	1 cut(s)	118
XspI	CTAG	2 cut(s)	9, 119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.