Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8043624.1

Orthogroup ID

OG0005153

Physical Location & Seq

Genomic Coordinates Forward (+)

113 .. 555

Gene Structure 443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8043624.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 443 bp

atgcctgcattacaagttgagcaactcaaccaactaagggccatcttcgcaagattcgacatggactcagatggcagcctcaccattctggagctcggggcgcttcttcggtccctaggactcaggccctcaggtgaccaaatgcatgttctgctaagcaacattgacgcaaacggcaatggctctgttgaatttgatgagttggtcaaggccattttgcctgacatgaatgaagagatctttataaaccagcagcaactcatggaggtttttcagtcctttgatcgcgacggcaatggctacattactgcagcagagctggcaaaatccatggccaaaatgggccaaccgttgtcgtataaggagctcacagagatgatcaaagaggctgacacagatggagatggtgtgatcagctttaatgaatttgcaactataatggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

148

Amino Acids

16.34

Weight (kDa)

4.19

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25600
fragaria_vesca	FvH4_4g28451
malus_domestica	MD06G1209000.v1.1 MD13G1050700.v1.1 MD14G1219400.v1.1 MD16G1051200.v1.1
prunus_persica	Prupe.1G301400_v2.0.a1 Prupe.5G214100_v2.0.a1
pyrus_communis	pycom13g04480 pycom14g18180 pycom16g04500
rosa_chinensis	RchiOBHm_Chr4g0436421 RchiOBHm_Chr7g0184291
rosa_laevigata	RLG00000004989 RLG00000006520
rosa_multiflora	Rmu_co8043624.1_g000001 Rmu_co8189102.1_g000001 Rmu_sc0013812.1_g000006
rosa_roxburghii	Rroxscaffold_3G00269760 Rroxscaffold_5G00377580
rosa_rugosa	Rorug04G0293700
rosa_samantha	Rh4AG348200 Rh4BG356800 Rh4DG350600 Rh7AG081400 Rh7BG065900 Rh7CG066200 Rh7DG066000
rosa_wichuraiana	Rw4G030430 Rw7G005400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	245
AccII	CGCG	1 cut(s)	288
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	2 cut(s)	191, 425
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	191
AjuI	GAANNNNNNNTTGG	2 cut(s)	132, 164
AluBI	AGCT	4 cut(s)	94, 319, 367, 417
AluI	AGCT	4 cut(s)	94, 319, 367, 417
Alw21I	GWGCWC	2 cut(s)	96, 369
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	5 cut(s)	39, 125, 210, 333, 343
ApeKI	GCWGC	3 cut(s)	75, 253, 311
ApoI	RAATTY	2 cut(s)	191, 425
AspA2I	CCTAGG	1 cut(s)	115
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	4 cut(s)	39, 111, 126, 343
AsuHPI	GGTGA	2 cut(s)	73, 146
AvaI	CYCGRG	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	111
AvrII	CCTAGG	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	130
BalI	TGGCCA	1 cut(s)	335
BanII	GRGCYC	2 cut(s)	96, 369
Bbv12I	GWGCWC	2 cut(s)	96, 369
BbvI	GCAGC	3 cut(s)	87, 265, 323
BccI	CCATC	4 cut(s)	50, 65, 392, 398
BceAI	ACGGC	2 cut(s)	190, 307
BclI	TGATCA	2 cut(s)	378, 411
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	309
BfoI	RGCGCY	1 cut(s)	104
BglII	AGATCT	1 cut(s)	237
BisI	GCNGC	3 cut(s)	76, 254, 312
BlnI	CCTAGG	1 cut(s)	115
BlpI	GCTNAGC	1 cut(s)	155
BlsI	GCNGC	3 cut(s)	77, 255, 313
Bme18I	GGWCC	1 cut(s)	111
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	4 cut(s)	39, 111, 126, 343
BmiI	GGNNCC	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	110
Bpu1102I	GCTNAGC	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	115, 330
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse21I	CCTNAGG	1 cut(s)	130
Bse3DI	GCAATG	2 cut(s)	184, 301
BseDI	CCNNGG	2 cut(s)	115, 330
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMI	GCAATG	2 cut(s)	184, 301
BseMII	CTCAG	3 cut(s)	81, 136, 144
BseXI	GCAGC	3 cut(s)	87, 265, 323
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	5 cut(s)	41, 127, 212, 335, 345
BsiHKAI	GWGCWC	2 cut(s)	96, 369
BsiHKCI	CYCGRG	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	5 cut(s)	41, 127, 212, 335, 345
BsoBI	CYCGRG	1 cut(s)	95
Bsp1286I	GDGCHC	2 cut(s)	96, 369
Bsp143I	GATC	4 cut(s)	237, 283, 378, 411
Bsp1720I	GCTNAGC	1 cut(s)	155
Bsp19I	CCATGG	1 cut(s)	330
Bsp68I	TCGCGA	1 cut(s)	288
BspANI	GGCC	5 cut(s)	41, 127, 212, 335, 345
BspCNI	CTCAG	3 cut(s)	80, 135, 143
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	113
BspMAI	CTGCAG	1 cut(s)	313
BsrDI	GCAATG	2 cut(s)	184, 301
BssECI	CCNNGG	2 cut(s)	115, 330
BssMI	GATC	4 cut(s)	237, 283, 378, 411
BssT1I	CCWWGG	2 cut(s)	115, 330
Bst4CI	ACNGT	1 cut(s)	351
Bst6I	CTCTTC	1 cut(s)	228
BstAPI	GCANNNNNTGC	1 cut(s)	151
BstC8I	GCNNGC	2 cut(s)	6, 321
BstDEI	CTNAG	5 cut(s)	35, 67, 122, 130, 155
BstDSI	CCRYGG	1 cut(s)	330
BstEII	GGTNACC	1 cut(s)	134
BstFNI	CGCG	1 cut(s)	288
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	4 cut(s)	240, 286, 381, 414
BstMBI	GATC	4 cut(s)	237, 283, 378, 411
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 100, 151, 320
BstNSI	RCATGY	1 cut(s)	149
BstPI	GGTNACC	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	309
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	3 cut(s)	87, 265, 323
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
Bsu36I	CCTNAGG	1 cut(s)	130
BsuRI	GGCC	5 cut(s)	41, 127, 212, 335, 345
BtgI	CCRYGG	1 cut(s)	330
BtuMI	TCGCGA	1 cut(s)	288
Cac8I	GCNNGC	2 cut(s)	6, 321
CfoI	GCGC	1 cut(s)	103
Cfr13I	GGNCC	4 cut(s)	39, 111, 126, 343
CseI	GACGC	1 cut(s)	176
CviAII	CATG	5 cut(s)	61, 146, 226, 262, 331
DdeI	CTNAG	5 cut(s)	35, 67, 122, 130, 155
DpnI	GATC	4 cut(s)	239, 285, 380, 413
DpnII	GATC	4 cut(s)	237, 283, 378, 411
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Ecl136II	GAGCTC	2 cut(s)	94, 367
Eco130I	CCWWGG	2 cut(s)	115, 330
Eco24I	GRGCYC	2 cut(s)	96, 369
Eco47I	GGWCC	1 cut(s)	111
Eco53kI	GAGCTC	2 cut(s)	94, 367
Eco81I	CCTNAGG	1 cut(s)	130
Eco88I	CYCGRG	1 cut(s)	95
Eco91I	GGTNACC	1 cut(s)	134
EcoICRI	GAGCTC	2 cut(s)	94, 367
EcoO109I	RGGNCCY	1 cut(s)	126
EcoO65I	GGTNACC	1 cut(s)	134
EcoT14I	CCWWGG	2 cut(s)	115, 330
EcoT22I	ATGCAT	1 cut(s)	147
EcoT38I	GRGCYC	2 cut(s)	96, 369
ErhI	CCWWGG	2 cut(s)	115, 330
FaeI	CATG	5 cut(s)	64, 149, 229, 265, 334
FaiI	YATR	8 cut(s)	62, 147, 227, 245, 263, 332, 360, 437
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	5 cut(s)	60, 145, 225, 261, 330
FbaI	TGATCA	2 cut(s)	378, 411
Fnu4HI	GCNGC	3 cut(s)	76, 254, 312
FriOI	GRGCYC	2 cut(s)	96, 369
Fsp4HI	GCNGC	3 cut(s)	76, 254, 312
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	3 cut(s)	76, 254, 312
GsuI	CTGGAG	1 cut(s)	110
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	5 cut(s)	41, 127, 212, 335, 345
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	5 cut(s)	64, 149, 229, 265, 334
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HinfI	GANTC	3 cut(s)	54, 65, 120
HphI	GGTGA	2 cut(s)	73, 146
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	2 cut(s)	89, 287
Hpy99I	CGWCG	1 cut(s)	293
HpyCH4III	ACNGT	1 cut(s)	351
HpyCH4V	TGCA	4 cut(s)	8, 145, 311, 431
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 100, 151, 320
HpyF3I	CTNAG	5 cut(s)	35, 67, 122, 130, 155
Hsp92II	CATG	5 cut(s)	64, 149, 229, 265, 334
HspAI	GCGC	1 cut(s)	101
Ksp22I	TGATCA	2 cut(s)	378, 411
Kzo9I	GATC	4 cut(s)	237, 283, 378, 411
LmnI	GCTCC	2 cut(s)	91, 364
LpnPI	CCDG	7 cut(s)	18, 74, 109, 117, 234, 263, 305
Lsp1109I	GCAGC	3 cut(s)	87, 265, 323
MaeI	CTAG	1 cut(s)	116
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	4 cut(s)	239, 285, 380, 413
MboI	GATC	4 cut(s)	237, 283, 378, 411
MboII	GAAGA	3 cut(s)	37, 98, 245
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	2 cut(s)	96, 369
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	2 cut(s)	191, 425
MluNI	TGGCCA	1 cut(s)	335
MlyI	GAGTC	2 cut(s)	59, 114
MnlI	CCTC	4 cut(s)	89, 139, 259, 379
Mox20I	TGGCCA	1 cut(s)	335
Mph1103I	ATGCAT	1 cut(s)	147
MscI	TGGCCA	1 cut(s)	335
MseI	TTAA	1 cut(s)	420
MslI	CAYNNNNRTG	1 cut(s)	374
Msp20I	TGGCCA	1 cut(s)	335
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	4 cut(s)	47, 100, 151, 320
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	4 cut(s)	237, 283, 378, 411
NlaIII	CATG	5 cut(s)	64, 149, 229, 265, 334
NlaIV	GGNNCC	1 cut(s)	113
NmuCI	GTSAC	1 cut(s)	134
NruI	TCGCGA	1 cut(s)	288
NsiI	ATGCAT	1 cut(s)	147
NspI	RCATGY	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	54
PkrI	GCNGC	3 cut(s)	77, 255, 313
PleI	GAGTC	2 cut(s)	59, 114
PpsI	GAGTC	2 cut(s)	59, 114
PsiI	TTATAA	1 cut(s)	245
Psp124BI	GAGCTC	2 cut(s)	96, 369
PspEI	GGTNACC	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	113
PspPI	GGNCC	4 cut(s)	39, 111, 126, 343
PstI	CTGCAG	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	237
RruI	TCGCGA	1 cut(s)	288
RseI	CAYNNNNRTG	1 cut(s)	374
SacI	GAGCTC	2 cut(s)	96, 369
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	3 cut(s)	76, 254, 312
Sau3AI	GATC	4 cut(s)	237, 283, 378, 411
Sau96I	GGNCC	4 cut(s)	39, 111, 126, 343
SchI	GAGTC	2 cut(s)	59, 114
SduI	GDGCHC	2 cut(s)	96, 369
SetI	ASST	6 cut(s)	96, 136, 270, 321, 369, 419
SfcI	CTRYAG	1 cut(s)	309
SinI	GGWCC	1 cut(s)	111
SmiMI	CAYNNNNRTG	1 cut(s)	374
Sse9I	AATT	2 cut(s)	191, 425
SspMI	CTAG	1 cut(s)	116
SstI	GAGCTC	2 cut(s)	96, 369
StyI	CCWWGG	2 cut(s)	115, 330
TaaI	ACNGT	1 cut(s)	351
TaqI	TCGA	1 cut(s)	57
TaqII	GACCGA	1 cut(s)	99
TasI	AATT	2 cut(s)	191, 425
TfiI	GAWTC	1 cut(s)	54
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	3 cut(s)	75, 253, 311
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	3 cut(s)	242, 246, 438
VpaK11BI	GGWCC	1 cut(s)	111
XapI	RAATTY	2 cut(s)	191, 425
XceI	RCATGY	1 cut(s)	149
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
XmaJI	CCTAGG	1 cut(s)	115
XspI	CTAG	1 cut(s)	116
Zsp2I	ATGCAT	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.