ENT
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G13020 AT5G13020 AT5G13020 |
| fragaria_vesca | FvH4_3g44080 FvH4_3g44080 |
| malus_domestica | MD03G1018600.v1.1 MD11G1019600.v1.1 MD11G1020100.v1.1 |
| prunus_persica | Prupe.6G017900_v2.0.a1 Prupe.6G017900_v2.0.a1 Prupe.6G017900_v2.0.a1 |
| pyrus_communis | pycom03g01610 pycom11g01450 |
| rosa_chinensis | RchiOBHm_Chr5g0080381 |
| rosa_laevigata | RLG00000036850 |
| rosa_multiflora | Rmu_sc0000826.1_g000013 Rmu_sc0006792.1_g000024 |
| rosa_roxburghii | Rroxscaffold_1G00003020 |
| rosa_rugosa | Rorug05G0468200 |
| rosa_samantha | Rh5AG522500 Rh5BG544000 Rh5CG567600 Rh5DG554300 |
| rosa_wichuraiana | Rw0G023260 Rw5G048560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 647 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 231 |
| AccI | GTMKAC | 1 cut(s) | 769 |
| AccII | CGCG | 1 cut(s) | 439 |
| AccIII | TCCGGA | 1 cut(s) | 333 |
| AciI | CCGC | 4 cut(s) | 47, 199, 627, 861 |
| AclI | AACGTT | 1 cut(s) | 1249 |
| AclWI | GGATC | 4 cut(s) | 325, 683, 737, 992 |
| AcoI | YGGCCR | 2 cut(s) | 793, 1173 |
| AcuI | CTGAAG | 1 cut(s) | 738 |
| AcvI | CACGTG | 1 cut(s) | 821 |
| AdeI | CACNNNGTG | 1 cut(s) | 824 |
| AfaI | GTAC | 3 cut(s) | 31, 593, 1163 |
| AgsI | TTSAA | 5 cut(s) | 71, 371, 935, 971, 1076 |
| AjnI | CCWGG | 9 cut(s) | 230, 308, 373, 553, 745, 772, 778, 784, 790 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 963, 995 |
| AluBI | AGCT | 5 cut(s) | 13, 110, 212, 271, 470 |
| AluI | AGCT | 5 cut(s) | 13, 110, 212, 271, 470 |
| Alw21I | GWGCWC | 2 cut(s) | 15, 490 |
| Alw26I | GTCTC | 1 cut(s) | 532 |
| AlwI | GGATC | 4 cut(s) | 325, 683, 737, 992 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1051 |
| Aor13HI | TCCGGA | 1 cut(s) | 333 |
| AoxI | GGCC | 5 cut(s) | 79, 617, 793, 858, 1173 |
| ApeKI | GCWGC | 2 cut(s) | 107, 389 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 857, 889 |
| AseI | ATTAAT | 1 cut(s) | 695 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 723, 939 |
| AspA2I | CCTAGG | 1 cut(s) | 131 |
| AspLEI | GCGC | 1 cut(s) | 441 |
| AspS9I | GGNCC | 7 cut(s) | 545, 564, 618, 776, 782, 788, 858 |
| AsuHPI | GGTGA | 4 cut(s) | 155, 220, 749, 1103 |
| AvaII | GGWCC | 5 cut(s) | 545, 564, 776, 782, 788 |
| AvrII | CCTAGG | 1 cut(s) | 131 |
| BanI | GGYRCC | 1 cut(s) | 647 |
| BanII | GRGCYC | 1 cut(s) | 15 |
| BbrPI | CACGTG | 1 cut(s) | 821 |
| Bbv12I | GWGCWC | 2 cut(s) | 15, 490 |
| BbvCI | CCTCAGC | 1 cut(s) | 672 |
| BbvI | GCAGC | 2 cut(s) | 119, 376 |
| BccI | CCATC | 5 cut(s) | 233, 499, 517, 999, 1140 |
| BceAI | ACGGC | 1 cut(s) | 1172 |
| BciT130I | CCWGG | 9 cut(s) | 232, 310, 375, 555, 747, 774, 780, 786, 792 |
| BcoDI | GTCTC | 1 cut(s) | 532 |
| BfaI | CTAG | 2 cut(s) | 132, 417 |
| BfmI | CTRYAG | 2 cut(s) | 105, 465 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 656 |
| BglII | AGATCT | 1 cut(s) | 101 |
| BisI | GCNGC | 4 cut(s) | 108, 390, 627, 861 |
| BlnI | CCTAGG | 1 cut(s) | 131 |
| BlpI | GCTNAGC | 1 cut(s) | 393 |
| BlsI | GCNGC | 4 cut(s) | 109, 391, 628, 862 |
| Bme1390I | CCNGG | 9 cut(s) | 232, 310, 375, 555, 747, 774, 780, 786, 792 |
| Bme18I | GGWCC | 5 cut(s) | 545, 564, 776, 782, 788 |
| BmgT120I | GGNCC | 7 cut(s) | 545, 564, 618, 776, 782, 788, 858 |
| BmiI | GGNNCC | 3 cut(s) | 620, 649, 859 |
| BmrFI | CCNGG | 9 cut(s) | 232, 310, 375, 555, 747, 774, 780, 786, 792 |
| BmsI | GCATC | 7 cut(s) | 126, 211, 443, 1048, 1069, 1091, 1244 |
| BpmI | CTGGAG | 1 cut(s) | 537 |
| Bpu10I | CCTNAGC | 1 cut(s) | 672 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 393 |
| BpuEI | CTTGAG | 1 cut(s) | 556 |
| BsaAI | YACGTR | 1 cut(s) | 821 |
| BsaJI | CCNNGG | 6 cut(s) | 131, 231, 309, 746, 796, 1002 |
| BsaWI | WCCGGW | 1 cut(s) | 333 |
| Bse1I | ACTGG | 2 cut(s) | 616, 1056 |
| Bse3DI | GCAATG | 1 cut(s) | 927 |
| BseAI | TCCGGA | 1 cut(s) | 333 |
| BseBI | CCWGG | 9 cut(s) | 232, 310, 375, 555, 747, 774, 780, 786, 792 |
| BseDI | CCNNGG | 6 cut(s) | 131, 231, 309, 746, 796, 1002 |
| BseGI | GGATG | 6 cut(s) | 141, 491, 509, 581, 991, 1151 |
| BseMI | GCAATG | 1 cut(s) | 927 |
| BseMII | CTCAG | 5 cut(s) | 204, 263, 407, 602, 663 |
| BseNI | ACTGG | 2 cut(s) | 616, 1056 |
| BseRI | GAGGAG | 1 cut(s) | 540 |
| BseXI | GCAGC | 2 cut(s) | 119, 376 |
| BsgI | GTGCAG | 3 cut(s) | 483, 849, 861 |
| Bsh1236I | CGCG | 1 cut(s) | 439 |
| BshFI | GGCC | 5 cut(s) | 81, 619, 795, 860, 1175 |
| BshNI | GGYRCC | 1 cut(s) | 647 |
| BsiHKAI | GWGCWC | 2 cut(s) | 15, 490 |
| BsiSI | CCGG | 1 cut(s) | 334 |
| BsmAI | GTCTC | 1 cut(s) | 532 |
| BsmBI | CGTCTC | 1 cut(s) | 532 |
| BsnI | GGCC | 5 cut(s) | 81, 619, 795, 860, 1175 |
| Bsp1286I | GDGCHC | 2 cut(s) | 15, 490 |
| Bsp13I | TCCGGA | 1 cut(s) | 333 |
| Bsp143I | GATC | 9 cut(s) | 83, 101, 330, 688, 742, 997, 1008, 1138, 1243 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 393 |
| Bsp19I | CCATGG | 1 cut(s) | 1002 |
| BspACI | CCGC | 4 cut(s) | 47, 199, 627, 861 |
| BspANI | GGCC | 5 cut(s) | 81, 619, 795, 860, 1175 |
| BspCNI | CTCAG | 5 cut(s) | 203, 264, 406, 601, 664 |
| BspEI | TCCGGA | 1 cut(s) | 333 |
| BspFNI | CGCG | 1 cut(s) | 439 |
| BspHI | TCATGA | 1 cut(s) | 403 |
| BspLI | GGNNCC | 3 cut(s) | 620, 649, 859 |
| BspMAI | CTGCAG | 1 cut(s) | 109 |
| BspPI | GGATC | 4 cut(s) | 325, 683, 737, 992 |
| BspT107I | GGYRCC | 1 cut(s) | 647 |
| BsrDI | GCAATG | 1 cut(s) | 927 |
| BsrI | ACTGG | 2 cut(s) | 616, 1056 |
| BssECI | CCNNGG | 6 cut(s) | 131, 231, 309, 746, 796, 1002 |
| BssMI | GATC | 9 cut(s) | 83, 101, 330, 688, 742, 997, 1008, 1138, 1243 |
| BssT1I | CCWWGG | 2 cut(s) | 131, 1002 |
| Bst2UI | CCWGG | 9 cut(s) | 232, 310, 375, 555, 747, 774, 780, 786, 792 |
| Bst4CI | ACNGT | 4 cut(s) | 427, 522, 1091, 1196 |
| Bst6I | CTCTTC | 1 cut(s) | 841 |
| BstBAI | YACGTR | 1 cut(s) | 821 |
| BstC8I | GCNNGC | 3 cut(s) | 201, 669, 988 |
| BstDEI | CTNAG | 6 cut(s) | 190, 260, 272, 393, 588, 672 |
| BstDSI | CCRYGG | 1 cut(s) | 1002 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 552, 555, 795 |
| BstF5I | GGATG | 6 cut(s) | 141, 491, 509, 581, 991, 1151 |
| BstFNI | CGCG | 1 cut(s) | 439 |
| BstHHI | GCGC | 1 cut(s) | 441 |
| BstKTI | GATC | 9 cut(s) | 86, 104, 333, 691, 745, 1000, 1011, 1141, 1246 |
| BstMAI | GTCTC | 1 cut(s) | 532 |
| BstMBI | GATC | 9 cut(s) | 83, 101, 330, 688, 742, 997, 1008, 1138, 1243 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 209, 656, 677 |
| BstNI | CCWGG | 9 cut(s) | 232, 310, 375, 555, 747, 774, 780, 786, 792 |
| BstSCI | CCNGG | 9 cut(s) | 230, 308, 373, 553, 745, 772, 778, 784, 790 |
| BstSFI | CTRYAG | 2 cut(s) | 105, 465 |
| BstUI | CGCG | 1 cut(s) | 439 |
| BstV1I | GCAGC | 2 cut(s) | 119, 376 |
| BstX2I | RGATCY | 1 cut(s) | 101 |
| BstYI | RGATCY | 1 cut(s) | 101 |
| BsuRI | GGCC | 5 cut(s) | 81, 619, 795, 860, 1175 |
| BtgI | CCRYGG | 1 cut(s) | 1002 |
| BtgZI | GCGATG | 2 cut(s) | 420, 441 |
| BtsCI | GGATG | 6 cut(s) | 141, 491, 509, 581, 991, 1151 |
| BtsI | GCAGTG | 2 cut(s) | 31, 500 |
| BtsIMutI | CAGTG | 3 cut(s) | 31, 500, 1049 |
| Cac8I | GCNNGC | 3 cut(s) | 201, 669, 988 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1051 |
| CciI | TCATGA | 1 cut(s) | 403 |
| CfoI | GCGC | 1 cut(s) | 441 |
| Cfr13I | GGNCC | 7 cut(s) | 545, 564, 618, 776, 782, 788, 858 |
| Csp6I | GTAC | 3 cut(s) | 30, 592, 1162 |
| CviAII | CATG | 7 cut(s) | 140, 148, 328, 404, 514, 1003, 1040 |
| CviQI | GTAC | 3 cut(s) | 30, 592, 1162 |
| DdeI | CTNAG | 6 cut(s) | 190, 260, 272, 393, 588, 672 |
| DpnI | GATC | 9 cut(s) | 85, 103, 332, 690, 744, 999, 1010, 1140, 1245 |
| DpnII | GATC | 9 cut(s) | 83, 101, 330, 688, 742, 997, 1008, 1138, 1243 |
| DraI | TTTAAA | 1 cut(s) | 208 |
| DraIII | CACNNNGTG | 1 cut(s) | 824 |
| EaeI | YGGCCR | 2 cut(s) | 793, 1173 |
| Eam1104I | CTCTTC | 1 cut(s) | 841 |
| EarI | CTCTTC | 1 cut(s) | 841 |
| EciI | GGCGGA | 1 cut(s) | 36 |
| Ecl136II | GAGCTC | 1 cut(s) | 13 |
| Eco130I | CCWWGG | 2 cut(s) | 131, 1002 |
| Eco24I | GRGCYC | 1 cut(s) | 15 |
| Eco47I | GGWCC | 5 cut(s) | 545, 564, 776, 782, 788 |
| Eco53kI | GAGCTC | 1 cut(s) | 13 |
| Eco57I | CTGAAG | 1 cut(s) | 738 |
| Eco72I | CACGTG | 1 cut(s) | 821 |
| EcoICRI | GAGCTC | 1 cut(s) | 13 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 552, 555, 795 |
| EcoO109I | RGGNCCY | 2 cut(s) | 545, 618 |
| EcoRII | CCWGG | 9 cut(s) | 230, 308, 373, 553, 745, 772, 778, 784, 790 |
| EcoT14I | CCWWGG | 2 cut(s) | 131, 1002 |
| EcoT22I | ATGCAT | 2 cut(s) | 141, 1084 |
| EcoT38I | GRGCYC | 1 cut(s) | 15 |
| ErhI | CCWWGG | 2 cut(s) | 131, 1002 |
| Esp3I | CGTCTC | 1 cut(s) | 532 |
| FaeI | CATG | 7 cut(s) | 143, 151, 331, 407, 517, 1006, 1043 |
| FatI | CATG | 7 cut(s) | 139, 147, 327, 403, 513, 1002, 1039 |
| FauI | CCCGC | 1 cut(s) | 192 |
| FauNDI | CATATG | 1 cut(s) | 1268 |
| FblI | GTMKAC | 1 cut(s) | 769 |
| Fnu4HI | GCNGC | 4 cut(s) | 108, 390, 627, 861 |
| FokI | GGATG | 6 cut(s) | 148, 478, 496, 568, 978, 1158 |
| FriOI | GRGCYC | 1 cut(s) | 15 |
| Fsp4HI | GCNGC | 4 cut(s) | 108, 390, 627, 861 |
| FspBI | CTAG | 2 cut(s) | 132, 417 |
| GlaI | GCGC | 1 cut(s) | 440 |
| GluI | GCNGC | 4 cut(s) | 108, 390, 627, 861 |
| GsuI | CTGGAG | 1 cut(s) | 537 |
| HaeIII | GGCC | 5 cut(s) | 81, 619, 795, 860, 1175 |
| HapII | CCGG | 1 cut(s) | 334 |
| HhaI | GCGC | 1 cut(s) | 441 |
| Hin1II | CATG | 7 cut(s) | 143, 151, 331, 407, 517, 1006, 1043 |
| Hin6I | GCGC | 1 cut(s) | 439 |
| HinP1I | GCGC | 1 cut(s) | 439 |
| HincII | GTYRAC | 2 cut(s) | 770, 1192 |
| HindII | GTYRAC | 2 cut(s) | 770, 1192 |
| HinfI | GANTC | 1 cut(s) | 950 |
| HpaII | CCGG | 1 cut(s) | 334 |
| HphI | GGTGA | 4 cut(s) | 155, 220, 749, 1103 |
| Hpy166II | GTNNAC | 3 cut(s) | 770, 813, 1192 |
| Hpy188I | TCNGA | 6 cut(s) | 19, 220, 283, 564, 1087, 1240 |
| Hpy188III | TCNNGA | 5 cut(s) | 334, 404, 716, 995, 1012 |
| Hpy8I | GTNNAC | 3 cut(s) | 770, 813, 1192 |
| HpyAV | CCTTC | 7 cut(s) | 53, 606, 609, 728, 874, 910, 1172 |
| HpyCH4III | ACNGT | 4 cut(s) | 427, 522, 1091, 1196 |
| HpyCH4IV | ACGT | 2 cut(s) | 820, 1249 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 209, 656, 677 |
| HpyF3I | CTNAG | 6 cut(s) | 190, 260, 272, 393, 588, 672 |
| HpySE526I | ACGT | 2 cut(s) | 820, 1249 |
| Hsp92II | CATG | 7 cut(s) | 143, 151, 331, 407, 517, 1006, 1043 |
| HspAI | GCGC | 1 cut(s) | 439 |
| Kpn2I | TCCGGA | 1 cut(s) | 333 |
| Kzo9I | GATC | 9 cut(s) | 83, 101, 330, 688, 742, 997, 1008, 1138, 1243 |
| LmnI | GCTCC | 4 cut(s) | 268, 493, 677, 983 |
| Lsp1109I | GCAGC | 2 cut(s) | 119, 376 |
| LweI | GCATC | 7 cut(s) | 126, 211, 443, 1048, 1069, 1091, 1244 |
| MaeI | CTAG | 2 cut(s) | 132, 417 |
| MaeII | ACGT | 2 cut(s) | 820, 1249 |
| MaeIII | GTNAC | 2 cut(s) | 143, 926 |
| MalI | GATC | 9 cut(s) | 85, 103, 332, 690, 744, 999, 1010, 1140, 1245 |
| MboI | GATC | 9 cut(s) | 83, 101, 330, 688, 742, 997, 1008, 1138, 1243 |
| MboII | GAAGA | 8 cut(s) | 78, 111, 299, 633, 714, 731, 858, 1088 |
| MflI | RGATCY | 1 cut(s) | 101 |
| MhlI | GDGCHC | 2 cut(s) | 15, 490 |
| MluCI | AATT | 2 cut(s) | 249, 1230 |
| MlyI | GAGTC | 1 cut(s) | 944 |
| MmeI | TCCRAC | 2 cut(s) | 446, 542 |
| Mph1103I | ATGCAT | 2 cut(s) | 141, 1084 |
| MroI | TCCGGA | 1 cut(s) | 333 |
| MroXI | GAANNNNTTC | 2 cut(s) | 723, 939 |
| MseI | TTAA | 4 cut(s) | 207, 248, 695, 960 |
| MspA1I | CMGCKG | 1 cut(s) | 110 |
| MspI | CCGG | 1 cut(s) | 334 |
| MspR9I | CCNGG | 9 cut(s) | 232, 310, 375, 555, 747, 774, 780, 786, 792 |
| MvaI | CCWGG | 9 cut(s) | 232, 310, 375, 555, 747, 774, 780, 786, 792 |
| MvnI | CGCG | 1 cut(s) | 439 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 209, 656, 677 |
| NcoI | CCATGG | 1 cut(s) | 1002 |
| NdeI | CATATG | 1 cut(s) | 1268 |
| NdeII | GATC | 9 cut(s) | 83, 101, 330, 688, 742, 997, 1008, 1138, 1243 |
| NlaIII | CATG | 7 cut(s) | 143, 151, 331, 407, 517, 1006, 1043 |
| NlaIV | GGNNCC | 3 cut(s) | 620, 649, 859 |
| NmeAIII | GCCGAG | 1 cut(s) | 821 |
| NmuCI | GTSAC | 2 cut(s) | 143, 926 |
| NsiI | ATGCAT | 2 cut(s) | 141, 1084 |
| PagI | TCATGA | 1 cut(s) | 403 |
| PdmI | GAANNNNTTC | 2 cut(s) | 723, 939 |
| PflFI | GACNNNGTC | 1 cut(s) | 543 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 231 |
| PfoI | TCCNGGA | 1 cut(s) | 553 |
| PkrI | GCNGC | 4 cut(s) | 109, 391, 628, 862 |
| PleI | GAGTC | 1 cut(s) | 944 |
| PmaCI | CACGTG | 1 cut(s) | 821 |
| PmlI | CACGTG | 1 cut(s) | 821 |
| PpsI | GAGTC | 1 cut(s) | 944 |
| Ppu21I | YACGTR | 1 cut(s) | 821 |
| PpuMI | RGGWCCY | 1 cut(s) | 545 |
| PshBI | ATTAAT | 1 cut(s) | 695 |
| Psp124BI | GAGCTC | 1 cut(s) | 15 |
| Psp1406I | AACGTT | 1 cut(s) | 1249 |
| Psp5II | RGGWCCY | 1 cut(s) | 545 |
| Psp6I | CCWGG | 9 cut(s) | 230, 308, 373, 553, 745, 772, 778, 784, 790 |
| PspCI | CACGTG | 1 cut(s) | 821 |
| PspGI | CCWGG | 9 cut(s) | 230, 308, 373, 553, 745, 772, 778, 784, 790 |
| PspN4I | GGNNCC | 3 cut(s) | 620, 649, 859 |
| PspPI | GGNCC | 7 cut(s) | 545, 564, 618, 776, 782, 788, 858 |
| PspPPI | RGGWCCY | 1 cut(s) | 545 |
| PstI | CTGCAG | 1 cut(s) | 109 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1051 |
| PsuI | RGATCY | 1 cut(s) | 101 |
| PsyI | GACNNNGTC | 1 cut(s) | 543 |
| PvuII | CAGCTG | 1 cut(s) | 110 |
| RsaI | GTAC | 3 cut(s) | 31, 593, 1163 |
| RsaNI | GTAC | 3 cut(s) | 30, 592, 1162 |
| SacI | GAGCTC | 1 cut(s) | 15 |
| SalI | GTCGAC | 1 cut(s) | 768 |
| SaqAI | TTAA | 4 cut(s) | 207, 248, 695, 960 |
| SatI | GCNGC | 4 cut(s) | 108, 390, 627, 861 |
| Sau3AI | GATC | 9 cut(s) | 83, 101, 330, 688, 742, 997, 1008, 1138, 1243 |
| Sau96I | GGNCC | 7 cut(s) | 545, 564, 618, 776, 782, 788, 858 |
| SchI | GAGTC | 1 cut(s) | 944 |
| ScrFI | CCNGG | 9 cut(s) | 232, 310, 375, 555, 747, 774, 780, 786, 792 |
| SduI | GDGCHC | 2 cut(s) | 15, 490 |
| SfaNI | GCATC | 7 cut(s) | 126, 211, 443, 1048, 1069, 1091, 1244 |
| SfcI | CTRYAG | 2 cut(s) | 105, 465 |
| SinI | GGWCC | 5 cut(s) | 545, 564, 776, 782, 788 |
| SmlI | CTYRAG | 1 cut(s) | 535 |
| SmoI | CTYRAG | 1 cut(s) | 535 |
| Sse9I | AATT | 2 cut(s) | 249, 1230 |
| SsiI | CCGC | 4 cut(s) | 47, 199, 627, 861 |
| SspMI | CTAG | 2 cut(s) | 132, 417 |
| SstI | GAGCTC | 1 cut(s) | 15 |
| StyD4I | CCNGG | 9 cut(s) | 230, 308, 373, 553, 745, 772, 778, 784, 790 |
| StyI | CCWWGG | 2 cut(s) | 131, 1002 |
| TaaI | ACNGT | 4 cut(s) | 427, 522, 1091, 1196 |
| TaiI | ACGT | 2 cut(s) | 823, 1252 |
| TaqI | TCGA | 4 cut(s) | 634, 769, 1011, 1141 |
| TasI | AATT | 2 cut(s) | 249, 1230 |
| TauI | GCSGC | 2 cut(s) | 629, 863 |
| Tru1I | TTAA | 4 cut(s) | 207, 248, 695, 960 |
| Tru9I | TTAA | 4 cut(s) | 207, 248, 695, 960 |
| TscAI | CASTG | 3 cut(s) | 31, 507, 1056 |
| TseFI | GTSAC | 2 cut(s) | 143, 926 |
| TseI | GCWGC | 2 cut(s) | 107, 389 |
| Tsp45I | GTSAC | 2 cut(s) | 143, 926 |
| TspDTI | ATGAA | 7 cut(s) | 114, 300, 392, 932, 1056, 1116, 1182 |
| TspRI | CASTG | 3 cut(s) | 31, 507, 1056 |
| Tth111I | GACNNNGTC | 1 cut(s) | 543 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 231 |
| VpaK11BI | GGWCC | 5 cut(s) | 545, 564, 776, 782, 788 |
| VspI | ATTAAT | 1 cut(s) | 695 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 552, 555, 795 |
| XmaJI | CCTAGG | 1 cut(s) | 131 |
| XmiI | GTMKAC | 1 cut(s) | 769 |
| XmnI | GAANNNNTTC | 2 cut(s) | 723, 939 |
| XspI | CTAG | 2 cut(s) | 132, 417 |
| Zsp2I | ATGCAT | 2 cut(s) | 141, 1084 |