Rmu_sc0006792.1_g000024

ENT

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006792.1
Physical Location & Seq
Reverse (-)
88285 .. 92678
4394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006792.1_g000024.1.cds

Sequence Viewer

Length: 1311 bp
atggcctacgagctctcggatagcagtggaacggatgatgaccttcccccatctcatcaaaaccgctttcaaagaggaggccgaagttctgggaatggaagatctgcagctgttggttctgctccattacctaggatgcatggtgatatggaaacacagatccaccacattgagcaagaagcatactgttcagtcctgcgggcatttaaagcccaatctgatgccatcacctgggtaggtgtttgtttgatcatggagtggagaaaaaccagtgggcctcagctgggtacacataatgccgctcagcctgttcatgaccccatacctagtccaactgtttcggcatcacgtaagaaacagaaaacatcacagtctgtagcttctttatcacatggtggtgctccatctccagtgctgcctccatccatgcaaccttcctcatcagccttgagacgtggtcctcctccaggagctcggagcaagaagtcaaaatcatccacacagttcccttctacaagtattaccggaaggccccaagccccaaaccgaggttcttcaggtggctttgtggcaactgagcctgctgaggcaacaacttatgatccattaataggaagaaaagtatggacaaggtggcctgcggacaaccatttctatgaggctgtaataactgattacaaccatattcagggccgacatgctctggtttatgatatcaatacagcggatgaaacatgggaatgggtcaacctaaaagagatatctcctgaagatattcggtgggaaggtgatgatcctgggttttctcgtaggggtggtcgacctggatctggccgagggactaagaagtccatgggacgtggtggtgcagtttcaggtgcaggaaggggtagagggaccacaaaaggtcagcctaagaaggatttgcccccacaacaaaatggcattggcaggaaggccatgagcgacattgaaatacttcatacagactcgttgattaaagaggtggaaaaggtcttcagtgctagccatcctgacccgatggagattgagaaagctaagaaagttctcaaagagcatgaacaggcattgatcgatgcaattgcaacgcttgaagatgcatcagatggtgaaagtgatgaacatacattctctcaaagacaaccaatggaccaagaacgaggatggagaaaacggcaatatgatgaaatggcagaaggtcaggcagttgatggttcaaatggtactaaaatcatgagagatggtagaattgcatctgatgaccaacgttttgaaggcgatggcatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

436

Amino Acids

47.46

Weight (kDa)

6.94

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 847
AccB7I CCANNNNNTGG 1 cut(s) 231
AccBSI CCGCTC 1 cut(s) 302
AccI GTMKAC 1 cut(s) 820
AciI CCGC 5 cut(s) 64, 199, 300, 641, 725
AclI AACGTT 1 cut(s) 1288
AclWI GGATC 4 cut(s) 154, 596, 788, 835
AcoI YGGCCR 1 cut(s) 832
AcuI CTGAAG 3 cut(s) 540, 789, 1003
AdeI CACNNNGTG 1 cut(s) 395
AfaI GTAC 2 cut(s) 289, 1246
AfiI CCNNNNNNNGG 7 cut(s) 231, 284, 467, 548, 611, 688, 830
AgsI TTSAA 5 cut(s) 71, 974, 1115, 1239, 1295
AjiI CACGTC 2 cut(s) 455, 860
AjnI CCWGG 4 cut(s) 230, 466, 796, 823
AjuI GAANNNNNNNTTGG 2 cut(s) 535, 567
AluBI AGCT 6 cut(s) 13, 110, 283, 380, 473, 1058
AluI AGCT 6 cut(s) 13, 110, 283, 380, 473, 1058
Alw21I GWGCWC 3 cut(s) 15, 403, 475
Alw26I GTCTC 1 cut(s) 445
AlwI GGATC 4 cut(s) 154, 596, 788, 835
AoxI GGCC 8 cut(s) 3, 79, 275, 530, 635, 691, 832, 957
ApeKI GCWGC 2 cut(s) 107, 415
ArsI GACNNNNNNTTYG 2 cut(s) 1274, 1306
AseI ATTAAT 1 cut(s) 608
Asp700I GAANNNNTTC 2 cut(s) 774, 978
AspA2I CCTAGG 1 cut(s) 131
AspS9I GGNCC 6 cut(s) 275, 458, 531, 691, 897, 1171
AsuHPI GGTGA 4 cut(s) 155, 220, 800, 1142
AsuNHI GCTAGC 1 cut(s) 1025
AvaII GGWCC 3 cut(s) 458, 897, 1171
AvrII CCTAGG 1 cut(s) 131
BanII GRGCYC 2 cut(s) 15, 475
BbsI GAAGAC 1 cut(s) 1009
Bbv12I GWGCWC 3 cut(s) 15, 403, 475
BbvCI CCTCAGC 2 cut(s) 279, 585
BbvI GCAGC 2 cut(s) 119, 402
BceAI ACGGC 1 cut(s) 1211
BcgI CGANNNNNNTGC 2 cut(s) 1085, 1119
BciT130I CCWGG 4 cut(s) 232, 468, 798, 825
BclI TGATCA 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 445
BfaI CTAG 3 cut(s) 132, 327, 1026
BfmI CTRYAG 2 cut(s) 105, 375
BglII AGATCT 1 cut(s) 101
BisI GCNGC 3 cut(s) 108, 300, 416
BlnI CCTAGG 1 cut(s) 131
BlpI GCTNAGC 1 cut(s) 303
BlsI GCNGC 3 cut(s) 109, 301, 417
Bme1390I CCNGG 4 cut(s) 232, 468, 798, 825
Bme18I GGWCC 3 cut(s) 458, 897, 1171
BmgBI CACGTC 2 cut(s) 455, 860
BmgT120I GGNCC 6 cut(s) 275, 458, 531, 691, 897, 1171
BmiI GGNNCC 2 cut(s) 533, 898
BmrFI CCNGG 4 cut(s) 232, 468, 798, 825
BmsI GCATC 7 cut(s) 126, 211, 353, 1087, 1108, 1130, 1283
BmtI GCTAGC 1 cut(s) 1029
BpiI GAAGAC 1 cut(s) 1009
BpmI CTGGAG 2 cut(s) 393, 450
Bpu10I CCTNAGC 2 cut(s) 279, 585
Bpu1102I GCTNAGC 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 469
Bsa29I ATCGAT 1 cut(s) 1095
BsaAI YACGTR 1 cut(s) 350
BsaJI CCNNGG 6 cut(s) 131, 231, 547, 797, 835, 852
BsaWI WCCGGW 1 cut(s) 524
Bsc4I CCNNNNNNNGG 7 cut(s) 231, 284, 467, 548, 611, 688, 830
Bse1I ACTGG 2 cut(s) 270, 410
BseBI CCWGG 4 cut(s) 232, 468, 798, 825
BseCI ATCGAT 1 cut(s) 1095
BseDI CCNNGG 6 cut(s) 131, 231, 547, 797, 835, 852
BseGI GGATG 7 cut(s) 40, 141, 422, 494, 733, 1030, 1190
BseLI CCNNNNNNNGG 7 cut(s) 231, 284, 467, 548, 611, 688, 830
BseMII CTCAG 4 cut(s) 293, 317, 567, 576
BseNI ACTGG 2 cut(s) 270, 410
BseRI GAGGAG 2 cut(s) 90, 453
BseXI GCAGC 2 cut(s) 119, 402
BseYI CCCAGC 1 cut(s) 283
BsgI GTGCAG 2 cut(s) 888, 900
BshFI GGCC 8 cut(s) 5, 81, 277, 532, 637, 693, 834, 959
BshVI ATCGAT 1 cut(s) 1095
BsiHKAI GWGCWC 3 cut(s) 15, 403, 475
BsiSI CCGG 1 cut(s) 525
BslFI GGGAC 3 cut(s) 853, 870, 910
BslI CCNNNNNNNGG 7 cut(s) 231, 284, 467, 548, 611, 688, 830
BsmAI GTCTC 1 cut(s) 445
BsmBI CGTCTC 1 cut(s) 445
BsmFI GGGAC 3 cut(s) 853, 870, 910
BsnI GGCC 8 cut(s) 5, 81, 277, 532, 637, 693, 834, 959
Bsp1286I GDGCHC 3 cut(s) 15, 403, 475
Bsp143I GATC 7 cut(s) 101, 159, 249, 601, 793, 827, 1092
Bsp1720I GCTNAGC 1 cut(s) 303
Bsp19I CCATGG 1 cut(s) 852
BspACI CCGC 5 cut(s) 64, 199, 300, 641, 725
BspANI GGCC 8 cut(s) 5, 81, 277, 532, 637, 693, 834, 959
BspCNI CTCAG 4 cut(s) 292, 316, 568, 577
BspDI ATCGAT 1 cut(s) 1095
BspHI TCATGA 2 cut(s) 313, 1254
BspLI GGNNCC 2 cut(s) 533, 898
BspMAI CTGCAG 1 cut(s) 109
BspOI GCTAGC 1 cut(s) 1029
BspPI GGATC 4 cut(s) 154, 596, 788, 835
BsrBI CCGCTC 1 cut(s) 302
BsrI ACTGG 2 cut(s) 270, 410
BssECI CCNNGG 6 cut(s) 131, 231, 547, 797, 835, 852
BssMI GATC 7 cut(s) 101, 159, 249, 601, 793, 827, 1092
BssT1I CCWWGG 2 cut(s) 131, 852
Bst2UI CCWGG 4 cut(s) 232, 468, 798, 825
Bst4CI ACNGT 4 cut(s) 188, 337, 372, 504
BstBAI YACGTR 1 cut(s) 350
BstC8I GCNNGC 4 cut(s) 201, 582, 639, 1027
BstDEI CTNAG 7 cut(s) 279, 303, 576, 585, 843, 915, 1059
BstDSI CCRYGG 1 cut(s) 852
BstENI CCTNNNNNAGG 1 cut(s) 465
BstF5I GGATG 7 cut(s) 40, 141, 422, 494, 733, 1030, 1190
BstKTI GATC 7 cut(s) 104, 162, 252, 604, 796, 830, 1095
BstMAI GTCTC 1 cut(s) 445
BstMBI GATC 7 cut(s) 101, 159, 249, 601, 793, 827, 1092
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 4 cut(s) 232, 468, 798, 825
BstNSI RCATGY 1 cut(s) 701
BstSCI CCNGG 4 cut(s) 230, 466, 796, 823
BstSFI CTRYAG 2 cut(s) 105, 375
BstV1I GCAGC 2 cut(s) 119, 402
BstV2I GAAGAC 1 cut(s) 1009
BstX2I RGATCY 3 cut(s) 101, 159, 827
BstYI RGATCY 3 cut(s) 101, 159, 827
Bsu15I ATCGAT 1 cut(s) 1095
BsuRI GGCC 8 cut(s) 5, 81, 277, 532, 637, 693, 834, 959
BsuTUI ATCGAT 1 cut(s) 1095
BtgI CCRYGG 1 cut(s) 852
BtrI CACGTC 2 cut(s) 455, 860
BtsCI GGATG 7 cut(s) 40, 141, 422, 494, 733, 1030, 1190
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 4 cut(s) 31, 277, 417, 1027
Cac8I GCNNGC 4 cut(s) 201, 582, 639, 1027
CciI TCATGA 2 cut(s) 313, 1254
Cfr13I GGNCC 6 cut(s) 275, 458, 531, 691, 897, 1171
ClaI ATCGAT 1 cut(s) 1095
Csp6I GTAC 2 cut(s) 288, 1245
CviQI GTAC 2 cut(s) 288, 1245
DdeI CTNAG 7 cut(s) 279, 303, 576, 585, 843, 915, 1059
DpnI GATC 7 cut(s) 103, 161, 251, 603, 795, 829, 1094
DpnII GATC 7 cut(s) 101, 159, 249, 601, 793, 827, 1092
DraI TTTAAA 1 cut(s) 208
DraIII CACNNNGTG 1 cut(s) 395
DrdI GACNNNNNNGTC 1 cut(s) 847
DseDI GACNNNNNNGTC 1 cut(s) 847
EaeI YGGCCR 1 cut(s) 832
Ecl136II GAGCTC 2 cut(s) 13, 473
Eco130I CCWWGG 2 cut(s) 131, 852
Eco24I GRGCYC 2 cut(s) 15, 475
Eco32I GATATC 2 cut(s) 715, 762
Eco47I GGWCC 3 cut(s) 458, 897, 1171
Eco53kI GAGCTC 2 cut(s) 13, 473
Eco57I CTGAAG 3 cut(s) 540, 789, 1003
EcoICRI GAGCTC 2 cut(s) 13, 473
EcoNI CCTNNNNNAGG 1 cut(s) 465
EcoO109I RGGNCCY 1 cut(s) 531
EcoRII CCWGG 4 cut(s) 230, 466, 796, 823
EcoRV GATATC 2 cut(s) 715, 762
EcoT14I CCWWGG 2 cut(s) 131, 852
EcoT22I ATGCAT 2 cut(s) 141, 1123
EcoT38I GRGCYC 2 cut(s) 15, 475
ErhI CCWWGG 2 cut(s) 131, 852
Esp3I CGTCTC 1 cut(s) 445
FaqI GGGAC 3 cut(s) 853, 870, 910
FauI CCCGC 1 cut(s) 192
FauNDI CATATG 1 cut(s) 1307
FbaI TGATCA 1 cut(s) 249
FblI GTMKAC 1 cut(s) 820
Fnu4HI GCNGC 3 cut(s) 108, 300, 416
FokI GGATG 7 cut(s) 47, 148, 409, 481, 740, 1017, 1197
FriOI GRGCYC 2 cut(s) 15, 475
Fsp4HI GCNGC 3 cut(s) 108, 300, 416
FspBI CTAG 3 cut(s) 132, 327, 1026
GluI GCNGC 3 cut(s) 108, 300, 416
GsaI CCCAGC 1 cut(s) 287
GsuI CTGGAG 2 cut(s) 393, 450
HaeIII GGCC 8 cut(s) 5, 81, 277, 532, 637, 693, 834, 959
HapII CCGG 1 cut(s) 525
HincII GTYRAC 2 cut(s) 748, 821
HindII GTYRAC 2 cut(s) 748, 821
HinfI GANTC 1 cut(s) 989
HpaII CCGG 1 cut(s) 525
HphI GGTGA 4 cut(s) 155, 220, 800, 1142
Hpy166II GTNNAC 3 cut(s) 290, 748, 821
Hpy188I TCNGA 5 cut(s) 19, 220, 477, 1126, 1279
Hpy188III TCNNGA 4 cut(s) 314, 767, 1034, 1255
Hpy8I GTNNAC 3 cut(s) 290, 748, 821
HpyCH4III ACNGT 4 cut(s) 188, 337, 372, 504
HpyCH4IV ACGT 4 cut(s) 349, 454, 859, 1288
HpyCH4V TGCA 9 cut(s) 107, 139, 430, 869, 881, 1100, 1106, 1121, 1274
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 7 cut(s) 279, 303, 576, 585, 843, 915, 1059
HpySE526I ACGT 4 cut(s) 349, 454, 859, 1288
Ksp22I TGATCA 1 cut(s) 249
Kzo9I GATC 7 cut(s) 101, 159, 249, 601, 793, 827, 1092
LmnI GCTCC 4 cut(s) 127, 406, 470, 477
Lsp1109I GCAGC 2 cut(s) 119, 402
LweI GCATC 7 cut(s) 126, 211, 353, 1087, 1108, 1130, 1283
MaeI CTAG 3 cut(s) 132, 327, 1026
MaeII ACGT 4 cut(s) 349, 454, 859, 1288
MalI GATC 7 cut(s) 103, 161, 251, 603, 795, 829, 1094
MbiI CCGCTC 1 cut(s) 302
MboI GATC 7 cut(s) 101, 159, 249, 601, 793, 827, 1092
MboII GAAGA 6 cut(s) 111, 546, 627, 782, 1009, 1127
MfeI CAATTG 1 cut(s) 1101
MflI RGATCY 3 cut(s) 101, 159, 827
MhlI GDGCHC 3 cut(s) 15, 403, 475
MluCI AATT 2 cut(s) 1101, 1269
MlyI GAGTC 1 cut(s) 983
MmeI TCCRAC 1 cut(s) 356
Mph1103I ATGCAT 2 cut(s) 141, 1123
MroXI GAANNNNTTC 2 cut(s) 774, 978
MseI TTAA 3 cut(s) 207, 608, 999
MslI CAYNNNNRTG 3 cut(s) 396, 654, 739
MspA1I CMGCKG 3 cut(s) 110, 283, 725
MspI CCGG 1 cut(s) 525
MspR9I CCNGG 4 cut(s) 232, 468, 798, 825
MunI CAATTG 1 cut(s) 1101
MvaI CCWGG 4 cut(s) 232, 468, 798, 825
MwoI GCNNNNNNNGC 1 cut(s) 209
NcoI CCATGG 1 cut(s) 852
NdeI CATATG 1 cut(s) 1307
NdeII GATC 7 cut(s) 101, 159, 249, 601, 793, 827, 1092
NheI GCTAGC 1 cut(s) 1025
NlaIV GGNNCC 2 cut(s) 533, 898
NmeAIII GCCGAG 1 cut(s) 860
NsiI ATGCAT 2 cut(s) 141, 1123
NspI RCATGY 1 cut(s) 701
PagI TCATGA 2 cut(s) 313, 1254
PdmI GAANNNNTTC 2 cut(s) 774, 978
PflFI GACNNNGTC 1 cut(s) 456
PflMI CCANNNNNTGG 1 cut(s) 231
PfoI TCCNGGA 1 cut(s) 466
PkrI GCNGC 3 cut(s) 109, 301, 417
PleI GAGTC 1 cut(s) 983
PpsI GAGTC 1 cut(s) 983
Ppu21I YACGTR 1 cut(s) 350
PshBI ATTAAT 1 cut(s) 608
Psp124BI GAGCTC 2 cut(s) 15, 475
Psp1406I AACGTT 1 cut(s) 1288
Psp6I CCWGG 4 cut(s) 230, 466, 796, 823
PspFI CCCAGC 1 cut(s) 283
PspGI CCWGG 4 cut(s) 230, 466, 796, 823
PspN4I GGNNCC 2 cut(s) 533, 898
PspPI GGNCC 6 cut(s) 275, 458, 531, 691, 897, 1171
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 3 cut(s) 101, 159, 827
PsyI GACNNNGTC 1 cut(s) 456
PvuII CAGCTG 2 cut(s) 110, 283
RsaI GTAC 2 cut(s) 289, 1246
RsaNI GTAC 2 cut(s) 288, 1245
RseI CAYNNNNRTG 3 cut(s) 396, 654, 739
SacI GAGCTC 2 cut(s) 15, 475
SalI GTCGAC 1 cut(s) 819
SaqAI TTAA 3 cut(s) 207, 608, 999
SatI GCNGC 3 cut(s) 108, 300, 416
Sau3AI GATC 7 cut(s) 101, 159, 249, 601, 793, 827, 1092
Sau96I GGNCC 6 cut(s) 275, 458, 531, 691, 897, 1171
SchI GAGTC 1 cut(s) 983
ScrFI CCNGG 4 cut(s) 232, 468, 798, 825
SduI GDGCHC 3 cut(s) 15, 403, 475
SfaNI GCATC 7 cut(s) 126, 211, 353, 1087, 1108, 1130, 1283
SfcI CTRYAG 2 cut(s) 105, 375
SinI GGWCC 3 cut(s) 458, 897, 1171
SmiMI CAYNNNNRTG 3 cut(s) 396, 654, 739
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
Sse9I AATT 2 cut(s) 1101, 1269
SsiI CCGC 5 cut(s) 64, 199, 300, 641, 725
SspMI CTAG 3 cut(s) 132, 327, 1026
SstI GAGCTC 2 cut(s) 15, 475
StyD4I CCNGG 4 cut(s) 230, 466, 796, 823
StyI CCWWGG 2 cut(s) 131, 852
TaaI ACNGT 4 cut(s) 188, 337, 372, 504
TaiI ACGT 4 cut(s) 352, 457, 862, 1291
TaqI TCGA 2 cut(s) 820, 1095
TasI AATT 2 cut(s) 1101, 1269
TauI GCSGC 1 cut(s) 302
Tru1I TTAA 3 cut(s) 207, 608, 999
Tru9I TTAA 3 cut(s) 207, 608, 999
TscAI CASTG 4 cut(s) 31, 277, 417, 1027
TseI GCWGC 2 cut(s) 107, 415
TspDTI ATGAA 6 cut(s) 302, 744, 971, 1095, 1155, 1221
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 4 cut(s) 31, 277, 417, 1027
Tth111I GACNNNGTC 1 cut(s) 456
Van91I CCANNNNNTGG 1 cut(s) 231
VpaK11BI GGWCC 3 cut(s) 458, 897, 1171
VspI ATTAAT 1 cut(s) 608
XagI CCTNNNNNAGG 1 cut(s) 465
XceI RCATGY 1 cut(s) 701
XmaJI CCTAGG 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 820
XmnI GAANNNNTTC 2 cut(s) 774, 978
XspI CTAG 3 cut(s) 132, 327, 1026
Zsp2I ATGCAT 2 cut(s) 141, 1123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.