Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007058

Physical Location & Seq

Genomic Coordinates Forward (+)

84415673 .. 84417471

Gene Structure 1799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G048560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGGGTCTCCATCTCCAGTGCTGCCTCCATCCATGCAACCTTCCTCATCAGCCTTGAGACGTGGTCCTCCTCCAGGAGCTCGGAGCAAGAAGTCAAAATCATCCACACAGTTCCCTTCTACAAGTATTACCGGAAGGCCCCAAGCCCCAAACCGAGGTTCTTCAGGTGGCTTAAAAGTATGGACAAGGTGGCCTGCGGACAACCATTTCTATGAGGCTGTAATAACTGATTACAACCATATTCAGGGCCGACATGCTCTGGTTTATGATATCAATACAGCGGATGAAACATGGGAATGGGTCAACCTAAAAGAGATATCTCCTGAAGATATTCGGTGGGAAGGTGATGATCCTGGGTTTTCTCGTAGGGGTGGTCGACCTGGATGGCCGAGGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ENT LBR_tudor

Protein Analysis

132

Amino Acids

14.67

Weight (kDa)

9.51

Isoelectric Point (pI)

73.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13020 AT5G13020 AT5G13020
fragaria_vesca	FvH4_3g44080 FvH4_3g44080
malus_domestica	MD03G1018600.v1.1 MD11G1019600.v1.1 MD11G1020100.v1.1
prunus_persica	Prupe.6G017900_v2.0.a1 Prupe.6G017900_v2.0.a1 Prupe.6G017900_v2.0.a1
pyrus_communis	pycom03g01610 pycom11g01450
rosa_chinensis	RchiOBHm_Chr5g0080381
rosa_laevigata	RLG00000036850
rosa_multiflora	Rmu_sc0000826.1_g000013 Rmu_sc0006792.1_g000024
rosa_roxburghii	Rroxscaffold_1G00003020
rosa_rugosa	Rorug05G0468200
rosa_samantha	Rh5AG522500 Rh5BG544000 Rh5CG567600 Rh5DG554300
rosa_wichuraiana	Rw0G023260 Rw5G048560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	376
AciI	CCGC	2 cut(s)	197, 281
AclWI	GGATC	1 cut(s)	344
AcoI	YGGCCR	1 cut(s)	386
AcuI	CTGAAG	2 cut(s)	147, 345
AfiI	CCNNNNNNNGG	3 cut(s)	74, 155, 244
AjiI	CACGTC	1 cut(s)	62
AjnI	CCWGG	3 cut(s)	73, 352, 379
AjuI	GAANNNNNNNTTGG	2 cut(s)	142, 174
AluBI	AGCT	1 cut(s)	80
AluI	AGCT	1 cut(s)	80
Alw21I	GWGCWC	1 cut(s)	82
Alw26I	GTCTC	2 cut(s)	12, 52
AlwI	GGATC	1 cut(s)	344
AoxI	GGCC	4 cut(s)	137, 191, 247, 386
ApeKI	GCWGC	1 cut(s)	22
Asp700I	GAANNNNTTC	1 cut(s)	330
AspS9I	GGNCC	3 cut(s)	65, 138, 247
AsuHPI	GGTGA	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	9
BccI	CCATC	3 cut(s)	19, 37, 378
BciT130I	CCWGG	3 cut(s)	75, 354, 381
BcoDI	GTCTC	2 cut(s)	12, 52
BisI	GCNGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	24
Bme1390I	CCNGG	3 cut(s)	75, 354, 381
Bme18I	GGWCC	1 cut(s)	65
BmgBI	CACGTC	1 cut(s)	62
BmgT120I	GGNCC	3 cut(s)	65, 138, 247
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	3 cut(s)	75, 354, 381
BpmI	CTGGAG	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	76
BsaI	GGTCTC	1 cut(s)	12
BsaJI	CCNNGG	3 cut(s)	154, 353, 389
BsaWI	WCCGGW	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 155, 244
Bse1I	ACTGG	1 cut(s)	17
BseBI	CCWGG	3 cut(s)	75, 354, 381
BseDI	CCNNGG	3 cut(s)	154, 353, 389
BseGI	GGATG	4 cut(s)	29, 101, 289, 389
BseLI	CCNNNNNNNGG	3 cut(s)	74, 155, 244
BseNI	ACTGG	1 cut(s)	17
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	9
BshFI	GGCC	4 cut(s)	139, 193, 249, 388
BsiHKAI	GWGCWC	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	132
BslI	CCNNNNNNNGG	3 cut(s)	74, 155, 244
BsmAI	GTCTC	2 cut(s)	12, 52
BsmBI	CGTCTC	1 cut(s)	52
BsnI	GGCC	4 cut(s)	139, 193, 249, 388
Bso31I	GGTCTC	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	349
BspACI	CCGC	2 cut(s)	197, 281
BspANI	GGCC	4 cut(s)	139, 193, 249, 388
BspLI	GGNNCC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	344
BspTNI	GGTCTC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	17
BssECI	CCNNGG	3 cut(s)	154, 353, 389
BssMI	GATC	1 cut(s)	349
Bst2UI	CCWGG	3 cut(s)	75, 354, 381
Bst4CI	ACNGT	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	195
BstENI	CCTNNNNNAGG	1 cut(s)	72
BstF5I	GGATG	4 cut(s)	29, 101, 289, 389
BstKTI	GATC	1 cut(s)	352
BstMAI	GTCTC	2 cut(s)	12, 52
BstMBI	GATC	1 cut(s)	349
BstNI	CCWGG	3 cut(s)	75, 354, 381
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	3 cut(s)	73, 352, 379
BstV1I	GCAGC	1 cut(s)	9
BsuRI	GGCC	4 cut(s)	139, 193, 249, 388
BtrI	CACGTC	1 cut(s)	62
BtsCI	GGATG	4 cut(s)	29, 101, 289, 389
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	1 cut(s)	195
Cfr13I	GGNCC	3 cut(s)	65, 138, 247
CviAII	CATG	3 cut(s)	34, 254, 291
CviJI	RGCY	9 cut(s)	53, 80, 139, 146, 171, 193, 218, 249, 388
CviKI_1	RGCY	9 cut(s)	53, 80, 139, 146, 171, 193, 218, 249, 388
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	386
Ecl136II	GAGCTC	1 cut(s)	80
Eco24I	GRGCYC	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	12
Eco32I	GATATC	2 cut(s)	271, 318
Eco47I	GGWCC	1 cut(s)	65
Eco53kI	GAGCTC	1 cut(s)	80
Eco57I	CTGAAG	2 cut(s)	147, 345
EcoICRI	GAGCTC	1 cut(s)	80
EcoNI	CCTNNNNNAGG	1 cut(s)	72
EcoO109I	RGGNCCY	1 cut(s)	138
EcoRII	CCWGG	3 cut(s)	73, 352, 379
EcoRV	GATATC	2 cut(s)	271, 318
EcoT38I	GRGCYC	1 cut(s)	82
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	3 cut(s)	37, 257, 294
FaiI	YATR	7 cut(s)	35, 181, 213, 240, 255, 267, 292
FatI	CATG	3 cut(s)	33, 253, 290
FblI	GTMKAC	1 cut(s)	376
Fnu4HI	GCNGC	1 cut(s)	23
FokI	GGATG	3 cut(s)	16, 88, 296
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	1 cut(s)	23
GluI	GCNGC	1 cut(s)	23
GsuI	CTGGAG	1 cut(s)	57
HaeIII	GGCC	4 cut(s)	139, 193, 249, 388
HapII	CCGG	1 cut(s)	132
Hin1II	CATG	3 cut(s)	37, 257, 294
HincII	GTYRAC	2 cut(s)	304, 377
HindII	GTYRAC	2 cut(s)	304, 377
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	2 cut(s)	304, 377
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	1 cut(s)	323
Hpy8I	GTNNAC	2 cut(s)	304, 377
HpyAV	CCTTC	4 cut(s)	51, 126, 129, 335
HpyCH4III	ACNGT	1 cut(s)	111
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	1 cut(s)	37
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	3 cut(s)	37, 257, 294
Kzo9I	GATC	1 cut(s)	349
LmnI	GCTCC	2 cut(s)	77, 84
Lsp1109I	GCAGC	1 cut(s)	9
MaeII	ACGT	1 cut(s)	61
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	2 cut(s)	153, 338
MhlI	GDGCHC	1 cut(s)	82
MnlI	CCTC	7 cut(s)	36, 55, 78, 81, 149, 208, 384
MroXI	GAANNNNTTC	1 cut(s)	330
MseI	TTAA	1 cut(s)	173
MslI	CAYNNNNRTG	2 cut(s)	210, 295
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	3 cut(s)	75, 354, 381
MvaI	CCWGG	3 cut(s)	75, 354, 381
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	3 cut(s)	37, 257, 294
NlaIV	GGNNCC	1 cut(s)	140
NspI	RCATGY	1 cut(s)	257
PdmI	GAANNNNTTC	1 cut(s)	330
PflFI	GACNNNGTC	1 cut(s)	63
PfoI	TCCNGGA	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	24
Psp124BI	GAGCTC	1 cut(s)	82
Psp6I	CCWGG	3 cut(s)	73, 352, 379
PspGI	CCWGG	3 cut(s)	73, 352, 379
PspN4I	GGNNCC	1 cut(s)	140
PspPI	GGNCC	3 cut(s)	65, 138, 247
PsyI	GACNNNGTC	1 cut(s)	63
RseI	CAYNNNNRTG	2 cut(s)	210, 295
SacI	GAGCTC	1 cut(s)	82
SalI	GTCGAC	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	3 cut(s)	65, 138, 247
ScrFI	CCNGG	3 cut(s)	75, 354, 381
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	9 cut(s)	43, 64, 82, 160, 169, 191, 309, 346, 382
SinI	GGWCC	1 cut(s)	65
SmiMI	CAYNNNNRTG	2 cut(s)	210, 295
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
SsiI	CCGC	2 cut(s)	197, 281
SstI	GAGCTC	1 cut(s)	82
StyD4I	CCNGG	3 cut(s)	73, 352, 379
TaaI	ACNGT	1 cut(s)	111
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	376
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	1 cut(s)	24
TseI	GCWGC	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	300
TspRI	CASTG	1 cut(s)	24
Tth111I	GACNNNGTC	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	65
XagI	CCTNNNNNAGG	1 cut(s)	72
XceI	RCATGY	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	376
XmnI	GAANNNNTTC	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.