Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007058

Physical Location & Seq

Genomic Coordinates Reverse (-)

1198121 .. 1200058

Gene Structure 1938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g01610.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGCATGGTGACATGGAAATCCAGATTCACCGCATTGAGCAAGAAGCATACTGTTCAGTTCTAAGGGCGTTTAGTGCTCAATCTGATGCCCTCACCTGGGATAAGGAAACTTTAATTACGGAACTTAGAAAGGAGCTGAGAGTATCTGATGAGGAACACAGAGAACTTTTGTCCAGGGTCAATGCCGATGACATGATCCAGAGATTAAGGGAATGGAGAAAAACAAGTGGGGTTCAACATGGTACACTTAATGCTGCTCAGCCTGTTCATGACCCCCTACCTAGTCCAACTGTTTCAGCATCACGCAAGAAACAGAAAACATCACAGTCCTTATCCCTCGGTGCTCCAACTCCTGCATTGCCTCCATCCATGCAACAATCCTCTGCAGCTTTGAGACGAGGTCCTCCTCCAGGACCTCGGAACAAGAAACCAAAATCTTCCTCACAGTACCCTTCCACAAATATTCCTGGAAGGCCCCAAGCCACTAATCGAGGTCCTGCCGGTGCCTTTGTGGAAAATGAGCCTGCTGAGGGTGAAACTGATGATCCGTTAGTAGGAAGAAAAGTTTGGACAAGGTGGCCTGAAGACAATCACTTCTATGAGGCTGTTATAACTAATTTCAACCGTGCTGAGGGGCTACATGCTCTGGTTTATGATATTGGTACAGTGGATGAGACATGGGAATGGGTCAATCTAAAAGAGAGATATCTCCTGAAGATATTCGGTGGGAAGCTGATGGTCCTGGGATTTCTCGTAAAGGCAGTCGACCCGGACCTGGACCTGGCCGTGGGAATAAAAAGTCCACGGCACGTGGCGGTGCAGTTTCAGGTGCAGGAAGAGGTAGAGGGACTGCAAAGGGTTCCAAGAAGGATTTGCCTCCGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ENT LBR_tudor

Protein Analysis

296

Amino Acids

33.18

Weight (kDa)

7.82

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13020 AT5G13020 AT5G13020
fragaria_vesca	FvH4_3g44080 FvH4_3g44080
malus_domestica	MD03G1018600.v1.1 MD11G1019600.v1.1 MD11G1020100.v1.1
prunus_persica	Prupe.6G017900_v2.0.a1 Prupe.6G017900_v2.0.a1 Prupe.6G017900_v2.0.a1
pyrus_communis	pycom03g01610 pycom11g01450
rosa_chinensis	RchiOBHm_Chr5g0080381
rosa_laevigata	RLG00000036850
rosa_multiflora	Rmu_sc0000826.1_g000013 Rmu_sc0006792.1_g000024
rosa_roxburghii	Rroxscaffold_1G00003020
rosa_rugosa	Rorug05G0468200
rosa_samantha	Rh5AG522500 Rh5BG544000 Rh5CG567600 Rh5DG554300
rosa_wichuraiana	Rw0G023260 Rw5G048560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	611
AccB1I	GGYRCC	1 cut(s)	503
AccI	GTMKAC	1 cut(s)	765
AciI	CCGC	3 cut(s)	31, 815, 880
AclWI	GGATC	2 cut(s)	190, 539
AcoI	YGGCCR	1 cut(s)	783
AcuI	CTGAAG	2 cut(s)	603, 734
AcvI	CACGTG	1 cut(s)	811
AfaI	GTAC	3 cut(s)	244, 449, 664
AfiI	CCNNNNNNNGG	9 cut(s)	96, 97, 410, 530, 554, 631, 775, 781, 787
AgsI	TTSAA	2 cut(s)	236, 622
AjnI	CCWGG	7 cut(s)	95, 173, 409, 466, 741, 774, 780
AjuI	GAANNNNNNNTTGG	2 cut(s)	550, 582
AluBI	AGCT	3 cut(s)	136, 389, 733
AluI	AGCT	3 cut(s)	136, 389, 733
Alw21I	GWGCWC	2 cut(s)	79, 346
Alw26I	GTCTC	2 cut(s)	388, 668
AlwI	GGATC	2 cut(s)	190, 539
AoxI	GGCC	3 cut(s)	473, 578, 783
ApeKI	GCWGC	2 cut(s)	254, 386
Asp700I	GAANNNNTTC	1 cut(s)	719
AspS9I	GGNCC	7 cut(s)	401, 413, 474, 494, 739, 772, 778
AsuC2I	CCSGG	1 cut(s)	770
AsuHPI	GGTGA	4 cut(s)	20, 20, 85, 545
AvaII	GGWCC	6 cut(s)	401, 413, 494, 739, 772, 778
BanI	GGYRCC	1 cut(s)	503
BbrPI	CACGTG	1 cut(s)	811
BbsI	GAAGAC	1 cut(s)	591
Bbv12I	GWGCWC	2 cut(s)	79, 346
BbvCI	CCTCAGC	2 cut(s)	528, 630
BbvI	GCAGC	2 cut(s)	241, 398
BccI	CCATC	2 cut(s)	373, 730
BceAI	ACGGC	2 cut(s)	770, 821
BciT130I	CCWGG	7 cut(s)	97, 175, 411, 468, 743, 776, 782
BcnI	CCSGG	1 cut(s)	770
BcoDI	GTCTC	2 cut(s)	388, 668
BfaI	CTAG	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	384
BisI	GCNGC	2 cut(s)	255, 387
BlpI	GCTNAGC	1 cut(s)	258
BlsI	GCNGC	2 cut(s)	256, 388
Bme1390I	CCNGG	8 cut(s)	97, 175, 411, 468, 743, 770, 776, 782
Bme18I	GGWCC	6 cut(s)	401, 413, 494, 739, 772, 778
BmgT120I	GGNCC	7 cut(s)	401, 413, 474, 494, 739, 772, 778
BmiI	GGNNCC	3 cut(s)	476, 505, 861
BmrFI	CCNGG	8 cut(s)	97, 175, 411, 468, 743, 770, 776, 782
BmsI	GCATC	2 cut(s)	76, 308
BpiI	GAAGAC	1 cut(s)	591
BpmI	CTGGAG	1 cut(s)	393
Bpu10I	CCTNAGC	2 cut(s)	528, 630
Bpu1102I	GCTNAGC	1 cut(s)	258
BpuMI	CCSGG	1 cut(s)	770
BsaAI	YACGTR	1 cut(s)	811
BsaJI	CCNNGG	7 cut(s)	96, 174, 337, 416, 742, 786, 803
Bsc4I	CCNNNNNNNGG	9 cut(s)	96, 97, 410, 530, 554, 631, 775, 781, 787
Bse118I	RCCGGY	1 cut(s)	500
Bse3DI	GCAATG	1 cut(s)	356
BseBI	CCWGG	7 cut(s)	97, 175, 411, 468, 743, 776, 782
BseDI	CCNNGG	7 cut(s)	96, 174, 337, 416, 742, 786, 803
BseGI	GGATG	2 cut(s)	365, 676
BseLI	CCNNNNNNNGG	9 cut(s)	96, 97, 410, 530, 554, 631, 775, 781, 787
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	4 cut(s)	128, 272, 519, 621
BseRI	GAGGAG	1 cut(s)	396
BseXI	GCAGC	2 cut(s)	241, 398
BsgI	GTGCAG	2 cut(s)	839, 851
BshFI	GGCC	3 cut(s)	475, 580, 785
BshNI	GGYRCC	1 cut(s)	503
BsiHKAI	GWGCWC	2 cut(s)	79, 346
BsiSI	CCGG	2 cut(s)	501, 770
BslFI	GGGAC	1 cut(s)	861
BslI	CCNNNNNNNGG	9 cut(s)	96, 97, 410, 530, 554, 631, 775, 781, 787
BsmAI	GTCTC	2 cut(s)	388, 668
BsmBI	CGTCTC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	861
BsnI	GGCC	3 cut(s)	475, 580, 785
Bsp1286I	GDGCHC	2 cut(s)	79, 346
Bsp143I	GATC	2 cut(s)	195, 544
Bsp1720I	GCTNAGC	1 cut(s)	258
BspACI	CCGC	3 cut(s)	31, 815, 880
BspANI	GGCC	3 cut(s)	475, 580, 785
BspCNI	CTCAG	4 cut(s)	129, 271, 520, 622
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	3 cut(s)	476, 505, 861
BspMAI	CTGCAG	1 cut(s)	388
BspPI	GGATC	2 cut(s)	190, 539
BspT107I	GGYRCC	1 cut(s)	503
BsrDI	GCAATG	1 cut(s)	356
BsrFI	RCCGGY	1 cut(s)	500
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	7 cut(s)	96, 174, 337, 416, 742, 786, 803
BssMI	GATC	2 cut(s)	195, 544
Bst2UI	CCWGG	7 cut(s)	97, 175, 411, 468, 743, 776, 782
Bst4CI	ACNGT	6 cut(s)	53, 292, 327, 447, 626, 667
Bst6I	CTCTTC	1 cut(s)	831
BstBAI	YACGTR	1 cut(s)	811
BstC8I	GCNNGC	1 cut(s)	525
BstDEI	CTNAG	6 cut(s)	62, 125, 137, 258, 528, 630
BstDSI	CCRYGG	2 cut(s)	786, 803
BstENI	CCTNNNNNAGG	1 cut(s)	408
BstF5I	GGATG	2 cut(s)	365, 676
BstKTI	GATC	2 cut(s)	198, 547
BstMAI	GTCTC	2 cut(s)	388, 668
BstMBI	GATC	2 cut(s)	195, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNI	CCWGG	7 cut(s)	97, 175, 411, 468, 743, 776, 782
BstNSI	RCATGY	1 cut(s)	644
BstSCI	CCNGG	8 cut(s)	95, 173, 409, 466, 741, 768, 774, 780
BstSFI	CTRYAG	1 cut(s)	384
BstV1I	GCAGC	2 cut(s)	241, 398
BstV2I	GAAGAC	1 cut(s)	591
BsuRI	GGCC	3 cut(s)	475, 580, 785
BtgI	CCRYGG	2 cut(s)	786, 803
BtsCI	GGATG	2 cut(s)	365, 676
BtsIMutI	CAGTG	1 cut(s)	672
Cac8I	GCNNGC	1 cut(s)	525
CciI	TCATGA	1 cut(s)	268
Cfr10I	RCCGGY	1 cut(s)	500
Cfr13I	GGNCC	7 cut(s)	401, 413, 474, 494, 739, 772, 778
Csp6I	GTAC	3 cut(s)	243, 448, 663
CviAII	CATG	8 cut(s)	5, 13, 193, 239, 269, 370, 641, 678
CviQI	GTAC	3 cut(s)	243, 448, 663
DdeI	CTNAG	6 cut(s)	62, 125, 137, 258, 528, 630
DpnI	GATC	2 cut(s)	197, 546
DpnII	GATC	2 cut(s)	195, 544
EaeI	YGGCCR	1 cut(s)	783
Eam1104I	CTCTTC	1 cut(s)	831
EarI	CTCTTC	1 cut(s)	831
Eco32I	GATATC	1 cut(s)	707
Eco47I	GGWCC	6 cut(s)	401, 413, 494, 739, 772, 778
Eco57I	CTGAAG	2 cut(s)	603, 734
Eco72I	CACGTG	1 cut(s)	811
EcoNI	CCTNNNNNAGG	1 cut(s)	408
EcoO109I	RGGNCCY	4 cut(s)	401, 413, 474, 494
EcoRII	CCWGG	7 cut(s)	95, 173, 409, 466, 741, 774, 780
EcoRV	GATATC	1 cut(s)	707
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	388
FaeI	CATG	8 cut(s)	8, 16, 196, 242, 272, 373, 644, 681
FaqI	GGGAC	1 cut(s)	861
FatI	CATG	8 cut(s)	4, 12, 192, 238, 268, 369, 640, 677
FblI	GTMKAC	1 cut(s)	765
Fnu4HI	GCNGC	2 cut(s)	255, 387
FokI	GGATG	2 cut(s)	352, 683
Fsp4HI	GCNGC	2 cut(s)	255, 387
FspBI	CTAG	1 cut(s)	282
GluI	GCNGC	2 cut(s)	255, 387
GsuI	CTGGAG	1 cut(s)	393
HaeIII	GGCC	3 cut(s)	475, 580, 785
HapII	CCGG	2 cut(s)	501, 770
Hin1II	CATG	8 cut(s)	8, 16, 196, 242, 272, 373, 644, 681
HincII	GTYRAC	1 cut(s)	766
HindII	GTYRAC	1 cut(s)	766
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	2 cut(s)	501, 770
HphI	GGTGA	4 cut(s)	20, 20, 85, 545
Hpy166II	GTNNAC	3 cut(s)	245, 766, 803
Hpy188I	TCNGA	3 cut(s)	85, 148, 420
Hpy188III	TCNNGA	4 cut(s)	22, 199, 269, 712
Hpy8I	GTNNAC	3 cut(s)	245, 766, 803
HpyAV	CCTTC	3 cut(s)	462, 465, 861
HpyCH4III	ACNGT	6 cut(s)	53, 292, 327, 447, 626, 667
HpyCH4IV	ACGT	1 cut(s)	810
HpyCH4V	TGCA	7 cut(s)	4, 356, 373, 386, 820, 832, 853
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	6 cut(s)	62, 125, 137, 258, 528, 630
HpySE526I	ACGT	1 cut(s)	810
Hsp92II	CATG	8 cut(s)	8, 16, 196, 242, 272, 373, 644, 681
Kzo9I	GATC	2 cut(s)	195, 544
LmnI	GCTCC	2 cut(s)	133, 349
Lsp1109I	GCAGC	2 cut(s)	241, 398
LweI	GCATC	2 cut(s)	76, 308
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	810
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	2 cut(s)	197, 546
MboI	GATC	2 cut(s)	195, 544
MboII	GAAGA	5 cut(s)	429, 570, 596, 727, 848
MhlI	GDGCHC	2 cut(s)	79, 346
MluCI	AATT	2 cut(s)	114, 616
MmeI	TCCRAC	2 cut(s)	311, 371
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	719
MseI	TTAA	3 cut(s)	113, 206, 249
MslI	CAYNNNNRTG	2 cut(s)	597, 682
MspI	CCGG	2 cut(s)	501, 770
MspR9I	CCNGG	8 cut(s)	97, 175, 411, 468, 743, 770, 776, 782
MvaI	CCWGG	7 cut(s)	97, 175, 411, 468, 743, 776, 782
MwoI	GCNNNNNNNGC	1 cut(s)	74
NciI	CCSGG	1 cut(s)	770
NdeII	GATC	2 cut(s)	195, 544
NlaIII	CATG	8 cut(s)	8, 16, 196, 242, 272, 373, 644, 681
NlaIV	GGNNCC	3 cut(s)	476, 505, 861
NmuCI	GTSAC	1 cut(s)	8
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	644
PagI	TCATGA	1 cut(s)	268
PdmI	GAANNNNTTC	1 cut(s)	719
PfeI	GAWTC	1 cut(s)	25
PflFI	GACNNNGTC	1 cut(s)	399
PfoI	TCCNGGA	2 cut(s)	409, 466
PkrI	GCNGC	2 cut(s)	256, 388
PmaCI	CACGTG	1 cut(s)	811
PmlI	CACGTG	1 cut(s)	811
Ppu21I	YACGTR	1 cut(s)	811
PpuMI	RGGWCCY	3 cut(s)	401, 413, 494
PsiI	TTATAA	1 cut(s)	611
Psp5II	RGGWCCY	3 cut(s)	401, 413, 494
Psp6I	CCWGG	7 cut(s)	95, 173, 409, 466, 741, 774, 780
PspCI	CACGTG	1 cut(s)	811
PspGI	CCWGG	7 cut(s)	95, 173, 409, 466, 741, 774, 780
PspN4I	GGNNCC	3 cut(s)	476, 505, 861
PspPI	GGNCC	7 cut(s)	401, 413, 474, 494, 739, 772, 778
PspPPI	RGGWCCY	3 cut(s)	401, 413, 494
PstI	CTGCAG	1 cut(s)	388
PsyI	GACNNNGTC	1 cut(s)	399
RsaI	GTAC	3 cut(s)	244, 449, 664
RsaNI	GTAC	3 cut(s)	243, 448, 663
RseI	CAYNNNNRTG	2 cut(s)	597, 682
SalI	GTCGAC	1 cut(s)	764
SaqAI	TTAA	3 cut(s)	113, 206, 249
SatI	GCNGC	2 cut(s)	255, 387
Sau3AI	GATC	2 cut(s)	195, 544
Sau96I	GGNCC	7 cut(s)	401, 413, 474, 494, 739, 772, 778
ScrFI	CCNGG	8 cut(s)	97, 175, 411, 468, 743, 770, 776, 782
SduI	GDGCHC	2 cut(s)	79, 346
SfaNI	GCATC	2 cut(s)	76, 308
SfcI	CTRYAG	1 cut(s)	384
SinI	GGWCC	6 cut(s)	401, 413, 494, 739, 772, 778
SmiMI	CAYNNNNRTG	2 cut(s)	597, 682
Sse9I	AATT	2 cut(s)	114, 616
SsiI	CCGC	3 cut(s)	31, 815, 880
SspI	AATATT	1 cut(s)	463
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	8 cut(s)	95, 173, 409, 466, 741, 768, 774, 780
TaaI	ACNGT	6 cut(s)	53, 292, 327, 447, 626, 667
TaiI	ACGT	1 cut(s)	813
TaqI	TCGA	2 cut(s)	490, 765
TasI	AATT	2 cut(s)	114, 616
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	3 cut(s)	113, 206, 249
Tru9I	TTAA	3 cut(s)	113, 206, 249
TscAI	CASTG	1 cut(s)	672
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	2 cut(s)	254, 386
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	257
TspGWI	ACGGA	2 cut(s)	134, 537
TspRI	CASTG	1 cut(s)	672
Tth111I	GACNNNGTC	1 cut(s)	399
VpaK11BI	GGWCC	6 cut(s)	401, 413, 494, 739, 772, 778
XagI	CCTNNNNNAGG	1 cut(s)	408
XceI	RCATGY	1 cut(s)	644
XmiI	GTMKAC	1 cut(s)	765
XmnI	GAANNNNTTC	1 cut(s)	719
XspI	CTAG	1 cut(s)	282
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.