Rmu_sc0000826.1_g000013

ENT

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000826.1
Physical Location & Seq
Reverse (-)
31207 .. 35898
4692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000826.1_g000013.1.cds

Sequence Viewer

Length: 1401 bp
atggcctacgagctctcggatagcagtggaacggatgatgaccttcccccatctcatcaaaaccgctttcaaagaggaggccgaagttctgggaatggaagatctgcagctgttggttctgctccattacctaggatgcatggtgatatggaaacacagatccaccacattgagcaagaagcatactgttcagtcctgcgggcatttaaagcccaatctgatgccatcacctgggagaaggaaagtttaataacggaacttagaaaggagctgagagtatcggatgaggaacacagagaacttttgtccagggtcaatgccgatgacatgatccgaagaataagggagtggagaaaaaccagtgggcctcagctgggtacacataatgccgctcagcctgttcatgaccccatacctagtccaactgtttcggcatcacgtaagaaacagaaaacatcacagtctgtagcttctttatcacatggtggtgctccatctccagtgctgcctccatccatgcaaccttcctcatcagccttgagacgtggtcctcctccaggagctcggagcaagaagtcaaaatcatccacacagttcccttctacaagtattaccggaaggccccaagccccaaaccgaggttcttcaggtggctttgtggcaactgagcctgctgaggcaacaacttatgatccattaataggaagaaaagtatggacaaggtggcctgcggacaaccatttctatgaggctgtaataactgattacaaccatattcagggccgacatgctctggtttatgatatcaatacagcggatgaaacatgggaatgggtcaacctaaaagagatatctcctgaagatattcggtgggaaggtgatgatcctgggttttctcgtaggggtggtcgacctggatctggccgagggactaagaagtccatgggacgtggtggtgcagtttcaggtgcaggaaggggtagagggaccacaaaaggtcagcctaagaaggatttgcccccacaacaaaatggcattggcaggaaggccatgagcgacattgaaatacttcatacagactcgttgattaaagaggtggaaaaggtcttcagtgctagccatcctgacccgatggagattgagaaagctaagaaagttctcaaagagcatgaacaggcattgatcgatgcaattgcaacgcttgaagatgcatcagatggtgaaagtgatgaacatacattctctcaaagacaaccaatggaccaagaacgaggatggagaaaacggcaatatgatgaaatggcagaaggtcaggcagttgatggttcaaatggtactaaaatcatgagagatggtagaattgcatctgatgaccaacgttttgaaggcgatggcatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

466

Amino Acids

51.27

Weight (kDa)

6.76

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 937
AccB7I CCANNNNNTGG 1 cut(s) 231
AccBSI CCGCTC 1 cut(s) 392
AccI GTMKAC 1 cut(s) 910
AciI CCGC 5 cut(s) 64, 199, 390, 731, 815
AclI AACGTT 1 cut(s) 1378
AclWI GGATC 5 cut(s) 154, 325, 686, 878, 925
AcoI YGGCCR 1 cut(s) 922
AcuI CTGAAG 3 cut(s) 630, 879, 1093
AdeI CACNNNGTG 1 cut(s) 485
AfaI GTAC 2 cut(s) 379, 1336
AfiI CCNNNNNNNGG 7 cut(s) 231, 374, 557, 638, 701, 778, 920
AgsI TTSAA 5 cut(s) 71, 1064, 1205, 1329, 1385
AjiI CACGTC 2 cut(s) 545, 950
AjnI CCWGG 5 cut(s) 230, 308, 556, 886, 913
AjuI GAANNNNNNNTTGG 2 cut(s) 625, 657
AluBI AGCT 7 cut(s) 13, 110, 271, 373, 470, 563, 1148
AluI AGCT 7 cut(s) 13, 110, 271, 373, 470, 563, 1148
Alw21I GWGCWC 3 cut(s) 15, 493, 565
Alw26I GTCTC 1 cut(s) 535
AlwI GGATC 5 cut(s) 154, 325, 686, 878, 925
AoxI GGCC 8 cut(s) 3, 79, 365, 620, 725, 781, 922, 1047
ApeKI GCWGC 2 cut(s) 107, 505
ArsI GACNNNNNNTTYG 2 cut(s) 1364, 1396
AseI ATTAAT 1 cut(s) 698
Asp700I GAANNNNTTC 2 cut(s) 864, 1068
AspA2I CCTAGG 1 cut(s) 131
AspS9I GGNCC 6 cut(s) 365, 548, 621, 781, 987, 1261
AsuHPI GGTGA 4 cut(s) 155, 220, 890, 1232
AsuNHI GCTAGC 1 cut(s) 1115
AvaII GGWCC 3 cut(s) 548, 987, 1261
AvrII CCTAGG 1 cut(s) 131
BanII GRGCYC 2 cut(s) 15, 565
BbsI GAAGAC 1 cut(s) 1099
Bbv12I GWGCWC 3 cut(s) 15, 493, 565
BbvCI CCTCAGC 2 cut(s) 369, 675
BbvI GCAGC 2 cut(s) 119, 492
BceAI ACGGC 1 cut(s) 1301
BcgI CGANNNNNNTGC 2 cut(s) 1175, 1209
BciT130I CCWGG 5 cut(s) 232, 310, 558, 888, 915
BcoDI GTCTC 1 cut(s) 535
BfaI CTAG 3 cut(s) 132, 417, 1116
BfmI CTRYAG 2 cut(s) 105, 465
BglII AGATCT 1 cut(s) 101
BisI GCNGC 3 cut(s) 108, 390, 506
BlnI CCTAGG 1 cut(s) 131
BlpI GCTNAGC 1 cut(s) 393
BlsI GCNGC 3 cut(s) 109, 391, 507
Bme1390I CCNGG 5 cut(s) 232, 310, 558, 888, 915
Bme18I GGWCC 3 cut(s) 548, 987, 1261
BmgBI CACGTC 2 cut(s) 545, 950
BmgT120I GGNCC 6 cut(s) 365, 548, 621, 781, 987, 1261
BmiI GGNNCC 2 cut(s) 623, 988
BmrFI CCNGG 5 cut(s) 232, 310, 558, 888, 915
BmsI GCATC 7 cut(s) 126, 211, 443, 1177, 1198, 1220, 1373
BmtI GCTAGC 1 cut(s) 1119
BpiI GAAGAC 1 cut(s) 1099
BpmI CTGGAG 2 cut(s) 483, 540
Bpu10I CCTNAGC 2 cut(s) 369, 675
Bpu1102I GCTNAGC 1 cut(s) 393
BpuEI CTTGAG 1 cut(s) 559
Bsa29I ATCGAT 1 cut(s) 1185
BsaAI YACGTR 1 cut(s) 440
BsaJI CCNNGG 7 cut(s) 131, 231, 309, 637, 887, 925, 942
BsaWI WCCGGW 1 cut(s) 614
Bsc4I CCNNNNNNNGG 7 cut(s) 231, 374, 557, 638, 701, 778, 920
Bse1I ACTGG 2 cut(s) 360, 500
BseBI CCWGG 5 cut(s) 232, 310, 558, 888, 915
BseCI ATCGAT 1 cut(s) 1185
BseDI CCNNGG 7 cut(s) 131, 231, 309, 637, 887, 925, 942
BseGI GGATG 8 cut(s) 40, 141, 289, 512, 584, 823, 1120, 1280
BseLI CCNNNNNNNGG 7 cut(s) 231, 374, 557, 638, 701, 778, 920
BseMII CTCAG 5 cut(s) 263, 383, 407, 657, 666
BseNI ACTGG 2 cut(s) 360, 500
BseRI GAGGAG 2 cut(s) 90, 543
BseXI GCAGC 2 cut(s) 119, 492
BseYI CCCAGC 1 cut(s) 373
BsgI GTGCAG 2 cut(s) 978, 990
BshFI GGCC 8 cut(s) 5, 81, 367, 622, 727, 783, 924, 1049
BshVI ATCGAT 1 cut(s) 1185
BsiHKAI GWGCWC 3 cut(s) 15, 493, 565
BsiSI CCGG 1 cut(s) 615
BslFI GGGAC 3 cut(s) 943, 960, 1000
BslI CCNNNNNNNGG 7 cut(s) 231, 374, 557, 638, 701, 778, 920
BsmAI GTCTC 1 cut(s) 535
BsmBI CGTCTC 1 cut(s) 535
BsmFI GGGAC 3 cut(s) 943, 960, 1000
BsnI GGCC 8 cut(s) 5, 81, 367, 622, 727, 783, 924, 1049
Bsp1286I GDGCHC 3 cut(s) 15, 493, 565
Bsp143I GATC 7 cut(s) 101, 159, 330, 691, 883, 917, 1182
Bsp1720I GCTNAGC 1 cut(s) 393
Bsp19I CCATGG 1 cut(s) 942
BspACI CCGC 5 cut(s) 64, 199, 390, 731, 815
BspANI GGCC 8 cut(s) 5, 81, 367, 622, 727, 783, 924, 1049
BspCNI CTCAG 5 cut(s) 264, 382, 406, 658, 667
BspDI ATCGAT 1 cut(s) 1185
BspHI TCATGA 2 cut(s) 403, 1344
BspLI GGNNCC 2 cut(s) 623, 988
BspMAI CTGCAG 1 cut(s) 109
BspOI GCTAGC 1 cut(s) 1119
BspPI GGATC 5 cut(s) 154, 325, 686, 878, 925
BsrBI CCGCTC 1 cut(s) 392
BsrI ACTGG 2 cut(s) 360, 500
BssECI CCNNGG 7 cut(s) 131, 231, 309, 637, 887, 925, 942
BssMI GATC 7 cut(s) 101, 159, 330, 691, 883, 917, 1182
BssT1I CCWWGG 2 cut(s) 131, 942
Bst2UI CCWGG 5 cut(s) 232, 310, 558, 888, 915
Bst4CI ACNGT 4 cut(s) 188, 427, 462, 594
BstBAI YACGTR 1 cut(s) 440
BstC8I GCNNGC 4 cut(s) 201, 672, 729, 1117
BstDEI CTNAG 9 cut(s) 260, 272, 369, 393, 666, 675, 933, 1005, 1149
BstDSI CCRYGG 1 cut(s) 942
BstENI CCTNNNNNAGG 1 cut(s) 555
BstF5I GGATG 8 cut(s) 40, 141, 289, 512, 584, 823, 1120, 1280
BstKTI GATC 7 cut(s) 104, 162, 333, 694, 886, 920, 1185
BstMAI GTCTC 1 cut(s) 535
BstMBI GATC 7 cut(s) 101, 159, 330, 691, 883, 917, 1182
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 5 cut(s) 232, 310, 558, 888, 915
BstNSI RCATGY 1 cut(s) 791
BstSCI CCNGG 5 cut(s) 230, 308, 556, 886, 913
BstSFI CTRYAG 2 cut(s) 105, 465
BstV1I GCAGC 2 cut(s) 119, 492
BstV2I GAAGAC 1 cut(s) 1099
BstX2I RGATCY 3 cut(s) 101, 159, 917
BstYI RGATCY 3 cut(s) 101, 159, 917
Bsu15I ATCGAT 1 cut(s) 1185
BsuRI GGCC 8 cut(s) 5, 81, 367, 622, 727, 783, 924, 1049
BsuTUI ATCGAT 1 cut(s) 1185
BtgI CCRYGG 1 cut(s) 942
BtrI CACGTC 2 cut(s) 545, 950
BtsCI GGATG 8 cut(s) 40, 141, 289, 512, 584, 823, 1120, 1280
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 4 cut(s) 31, 367, 507, 1117
Cac8I GCNNGC 4 cut(s) 201, 672, 729, 1117
CciI TCATGA 2 cut(s) 403, 1344
Cfr13I GGNCC 6 cut(s) 365, 548, 621, 781, 987, 1261
ClaI ATCGAT 1 cut(s) 1185
Csp6I GTAC 2 cut(s) 378, 1335
CviQI GTAC 2 cut(s) 378, 1335
DdeI CTNAG 9 cut(s) 260, 272, 369, 393, 666, 675, 933, 1005, 1149
DpnI GATC 7 cut(s) 103, 161, 332, 693, 885, 919, 1184
DpnII GATC 7 cut(s) 101, 159, 330, 691, 883, 917, 1182
DraI TTTAAA 1 cut(s) 208
DraIII CACNNNGTG 1 cut(s) 485
DrdI GACNNNNNNGTC 1 cut(s) 937
DseDI GACNNNNNNGTC 1 cut(s) 937
EaeI YGGCCR 1 cut(s) 922
Ecl136II GAGCTC 2 cut(s) 13, 563
Eco130I CCWWGG 2 cut(s) 131, 942
Eco24I GRGCYC 2 cut(s) 15, 565
Eco32I GATATC 2 cut(s) 805, 852
Eco47I GGWCC 3 cut(s) 548, 987, 1261
Eco53kI GAGCTC 2 cut(s) 13, 563
Eco57I CTGAAG 3 cut(s) 630, 879, 1093
EcoICRI GAGCTC 2 cut(s) 13, 563
EcoNI CCTNNNNNAGG 1 cut(s) 555
EcoO109I RGGNCCY 1 cut(s) 621
EcoRII CCWGG 5 cut(s) 230, 308, 556, 886, 913
EcoRV GATATC 2 cut(s) 805, 852
EcoT14I CCWWGG 2 cut(s) 131, 942
EcoT22I ATGCAT 2 cut(s) 141, 1213
EcoT38I GRGCYC 2 cut(s) 15, 565
ErhI CCWWGG 2 cut(s) 131, 942
Esp3I CGTCTC 1 cut(s) 535
FaqI GGGAC 3 cut(s) 943, 960, 1000
FauI CCCGC 1 cut(s) 192
FauNDI CATATG 1 cut(s) 1397
FblI GTMKAC 1 cut(s) 910
Fnu4HI GCNGC 3 cut(s) 108, 390, 506
FokI GGATG 8 cut(s) 47, 148, 296, 499, 571, 830, 1107, 1287
FriOI GRGCYC 2 cut(s) 15, 565
Fsp4HI GCNGC 3 cut(s) 108, 390, 506
FspBI CTAG 3 cut(s) 132, 417, 1116
GluI GCNGC 3 cut(s) 108, 390, 506
GsaI CCCAGC 1 cut(s) 377
GsuI CTGGAG 2 cut(s) 483, 540
HaeIII GGCC 8 cut(s) 5, 81, 367, 622, 727, 783, 924, 1049
HapII CCGG 1 cut(s) 615
HincII GTYRAC 2 cut(s) 838, 911
HindII GTYRAC 2 cut(s) 838, 911
HinfI GANTC 1 cut(s) 1079
HpaII CCGG 1 cut(s) 615
HphI GGTGA 4 cut(s) 155, 220, 890, 1232
Hpy166II GTNNAC 3 cut(s) 380, 838, 911
Hpy188I TCNGA 7 cut(s) 19, 220, 283, 335, 567, 1216, 1369
Hpy188III TCNNGA 4 cut(s) 404, 857, 1124, 1345
Hpy8I GTNNAC 3 cut(s) 380, 838, 911
HpyCH4III ACNGT 4 cut(s) 188, 427, 462, 594
HpyCH4IV ACGT 4 cut(s) 439, 544, 949, 1378
HpyCH4V TGCA 9 cut(s) 107, 139, 520, 959, 971, 1190, 1196, 1211, 1364
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 9 cut(s) 260, 272, 369, 393, 666, 675, 933, 1005, 1149
HpySE526I ACGT 4 cut(s) 439, 544, 949, 1378
Kzo9I GATC 7 cut(s) 101, 159, 330, 691, 883, 917, 1182
LmnI GCTCC 5 cut(s) 127, 268, 496, 560, 567
Lsp1109I GCAGC 2 cut(s) 119, 492
LweI GCATC 7 cut(s) 126, 211, 443, 1177, 1198, 1220, 1373
MaeI CTAG 3 cut(s) 132, 417, 1116
MaeII ACGT 4 cut(s) 439, 544, 949, 1378
MalI GATC 7 cut(s) 103, 161, 332, 693, 885, 919, 1184
MbiI CCGCTC 1 cut(s) 392
MboI GATC 7 cut(s) 101, 159, 330, 691, 883, 917, 1182
MboII GAAGA 7 cut(s) 111, 348, 636, 717, 872, 1099, 1217
MfeI CAATTG 1 cut(s) 1191
MflI RGATCY 3 cut(s) 101, 159, 917
MhlI GDGCHC 3 cut(s) 15, 493, 565
MluCI AATT 2 cut(s) 1191, 1359
MlyI GAGTC 1 cut(s) 1073
MmeI TCCRAC 1 cut(s) 446
Mph1103I ATGCAT 2 cut(s) 141, 1213
MroXI GAANNNNTTC 2 cut(s) 864, 1068
MseI TTAA 4 cut(s) 207, 248, 698, 1089
MslI CAYNNNNRTG 3 cut(s) 486, 744, 829
MspA1I CMGCKG 3 cut(s) 110, 373, 815
MspI CCGG 1 cut(s) 615
MspR9I CCNGG 5 cut(s) 232, 310, 558, 888, 915
MunI CAATTG 1 cut(s) 1191
MvaI CCWGG 5 cut(s) 232, 310, 558, 888, 915
MwoI GCNNNNNNNGC 1 cut(s) 209
NcoI CCATGG 1 cut(s) 942
NdeI CATATG 1 cut(s) 1397
NdeII GATC 7 cut(s) 101, 159, 330, 691, 883, 917, 1182
NheI GCTAGC 1 cut(s) 1115
NlaIV GGNNCC 2 cut(s) 623, 988
NmeAIII GCCGAG 1 cut(s) 950
NsiI ATGCAT 2 cut(s) 141, 1213
NspI RCATGY 1 cut(s) 791
PagI TCATGA 2 cut(s) 403, 1344
PdmI GAANNNNTTC 2 cut(s) 864, 1068
PflFI GACNNNGTC 1 cut(s) 546
PflMI CCANNNNNTGG 1 cut(s) 231
PfoI TCCNGGA 1 cut(s) 556
PkrI GCNGC 3 cut(s) 109, 391, 507
PleI GAGTC 1 cut(s) 1073
PpsI GAGTC 1 cut(s) 1073
Ppu21I YACGTR 1 cut(s) 440
PshBI ATTAAT 1 cut(s) 698
Psp124BI GAGCTC 2 cut(s) 15, 565
Psp1406I AACGTT 1 cut(s) 1378
Psp6I CCWGG 5 cut(s) 230, 308, 556, 886, 913
PspFI CCCAGC 1 cut(s) 373
PspGI CCWGG 5 cut(s) 230, 308, 556, 886, 913
PspN4I GGNNCC 2 cut(s) 623, 988
PspPI GGNCC 6 cut(s) 365, 548, 621, 781, 987, 1261
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 3 cut(s) 101, 159, 917
PsyI GACNNNGTC 1 cut(s) 546
PvuII CAGCTG 2 cut(s) 110, 373
RsaI GTAC 2 cut(s) 379, 1336
RsaNI GTAC 2 cut(s) 378, 1335
RseI CAYNNNNRTG 3 cut(s) 486, 744, 829
SacI GAGCTC 2 cut(s) 15, 565
SalI GTCGAC 1 cut(s) 909
SaqAI TTAA 4 cut(s) 207, 248, 698, 1089
SatI GCNGC 3 cut(s) 108, 390, 506
Sau3AI GATC 7 cut(s) 101, 159, 330, 691, 883, 917, 1182
Sau96I GGNCC 6 cut(s) 365, 548, 621, 781, 987, 1261
SchI GAGTC 1 cut(s) 1073
ScrFI CCNGG 5 cut(s) 232, 310, 558, 888, 915
SduI GDGCHC 3 cut(s) 15, 493, 565
SfaNI GCATC 7 cut(s) 126, 211, 443, 1177, 1198, 1220, 1373
SfcI CTRYAG 2 cut(s) 105, 465
SinI GGWCC 3 cut(s) 548, 987, 1261
SmiMI CAYNNNNRTG 3 cut(s) 486, 744, 829
SmlI CTYRAG 1 cut(s) 538
SmoI CTYRAG 1 cut(s) 538
Sse9I AATT 2 cut(s) 1191, 1359
SsiI CCGC 5 cut(s) 64, 199, 390, 731, 815
SspMI CTAG 3 cut(s) 132, 417, 1116
SstI GAGCTC 2 cut(s) 15, 565
StyD4I CCNGG 5 cut(s) 230, 308, 556, 886, 913
StyI CCWWGG 2 cut(s) 131, 942
TaaI ACNGT 4 cut(s) 188, 427, 462, 594
TaiI ACGT 4 cut(s) 442, 547, 952, 1381
TaqI TCGA 2 cut(s) 910, 1185
TasI AATT 2 cut(s) 1191, 1359
TauI GCSGC 1 cut(s) 392
Tru1I TTAA 4 cut(s) 207, 248, 698, 1089
Tru9I TTAA 4 cut(s) 207, 248, 698, 1089
TscAI CASTG 4 cut(s) 31, 367, 507, 1117
TseI GCWGC 2 cut(s) 107, 505
TspDTI ATGAA 6 cut(s) 392, 834, 1061, 1185, 1245, 1311
TspGWI ACGGA 2 cut(s) 47, 269
TspRI CASTG 4 cut(s) 31, 367, 507, 1117
Tth111I GACNNNGTC 1 cut(s) 546
Van91I CCANNNNNTGG 1 cut(s) 231
VpaK11BI GGWCC 3 cut(s) 548, 987, 1261
VspI ATTAAT 1 cut(s) 698
XagI CCTNNNNNAGG 1 cut(s) 555
XceI RCATGY 1 cut(s) 791
XmaJI CCTAGG 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 910
XmnI GAANNNNTTC 2 cut(s) 864, 1068
XspI CTAG 3 cut(s) 132, 417, 1116
Zsp2I ATGCAT 2 cut(s) 141, 1213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.