Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011525

Physical Location & Seq

Genomic Coordinates Forward (+)

9022646 .. 9024373

Gene Structure 1728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G121300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCTCTTCCTAAATCAAACCCTAGGGTTTCAGCGTCCATGAAGATGAAAAGGGTCTCTGACGCTATGAAGCCTCAGAAAACTGCCATGGCCAAGAGAGGCTCCACTCTGAAGAATAAGGCCGGCCGACTCTCGAAGCTGTGCGATATTGCCGTTTACATGATCGCTGTTGGTGCCGACGGCGAGATCGACGCTTGGCCGGAAATCCAACAAGATTTGAAATCAGTTCTACTCAAGTACAAGAATCTGAAAAGGGGTTTTAAAGATGGAATTGAAAAGGGTCTGTTCTCCGTCGAAAAGGGTTTCTTGGAAATTGTTGATGATCGAGAAAATCGGGATTTGGGTATTCAAGATAATTGCTTGGGGGCCAAGTTGGAGTCTTTGAATGAGAGGATCGGAGCTGTGACGATGAAGATGATGAGGGATGACGGTAAGTGCAGTTTCATGGACTTGTACAAGAATATCATGGAACCAGATGCAGCAGATCAACAACAACTATCATCTCTTAATCTTAATTTGAATCTTGATCCAACTGATCTCGTCGTACCCACACCCAAACCCAATTTAATTGGTGAGATTAATTTGAATCTTGATCCAGAAGAACCACAAGAGCAGCCGCAGCCGCAACCACCTTCTGTGCCAAGTGTGGAAATTAGTGATGATGATATGAAGTTGCTATTGAGTGATTGTGAGATTGGTTTGATGGAAGATGATATGCAGTTTTGTGATAATCTTGATGATTATGAGCCAACTGTGGATACTATTTATGATTTTCTCAGTTGGGTATTGGGTGATGAAGATCAAAATGATAATGGTGCAATGGAAGATGATGTGCAACCTCAGAGTACTAATCATATTACTGATGATGAGCATGATGACATTAGGTTGCTGTTGACTGATTGTGAGATTGGTTTGATGCAAGAAGATTTGCAATTCTGTGACAATGACTTGAGTGATTTTTTGGCGCCTCTTGAAACCATGTTGGTACAACATCAGCCTCATTTCGAGTTAAATCTTAATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

342

Amino Acids

38.4

Weight (kDa)

4.26

Isoelectric Point (pI)

38.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23771 FvH4_2g31102
prunus_persica	Prupe.6G121300_v2.0.a1 Prupe.6G121400_v2.0.a1 Prupe.6G121600_v2.0.a1 Prupe.6G121700_v2.0.a1 Prupe.6G121700_v2.0.a1
rosa_laevigata	RLG00000012128
rosa_multiflora	Rmu_sc0003735.1_g000004
rosa_roxburghii	Rroxscaffold_7G00176180
rosa_rugosa	Rorug06G0218600 Rorug06G0390600
rosa_samantha	Rh6AG330300 Rh6AG505900 Rh6BG337200 Rh6BG516700 Rh6CG522600 Rh6DG330600 Rh6DG508300
rosa_wichuraiana	Rw6G028680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	173, 964
AciI	CCGC	2 cut(s)	617, 623
AclWI	GGATC	3 cut(s)	401, 521, 587
AcoI	YGGCCR	3 cut(s)	90, 124, 197
AcuI	CTGAAG	1 cut(s)	131
AcyI	GRCGYC	1 cut(s)	965
AfaI	GTAC	5 cut(s)	239, 455, 546, 847, 987
AgsI	TTSAA	7 cut(s)	220, 275, 350, 385, 520, 586, 974
AluBI	AGCT	2 cut(s)	139, 401
AluI	AGCT	2 cut(s)	139, 401
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	3 cut(s)	401, 521, 587
AoxI	GGCC	5 cut(s)	90, 120, 124, 197, 366
ApeKI	GCWGC	3 cut(s)	479, 613, 619
AseI	ATTAAT	1 cut(s)	579
AspA2I	CCTAGG	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	967
AspS9I	GGNCC	1 cut(s)	366
AsuHPI	GGTGA	2 cut(s)	584, 803
AvrII	CCTAGG	1 cut(s)	23
BalI	TGGCCA	1 cut(s)	92
BanI	GGYRCC	2 cut(s)	173, 964
BbvI	GCAGC	3 cut(s)	491, 625, 631
BccI	CCATC	2 cut(s)	260, 697
BceAI	ACGGC	2 cut(s)	137, 196
BciVI	GTATCC	1 cut(s)	751
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	2 cut(s)	24, 1024
BfoI	RGCGCY	1 cut(s)	968
BfuI	GTATCC	1 cut(s)	751
BisI	GCNGC	5 cut(s)	480, 614, 617, 620, 623
BlnI	CCTAGG	1 cut(s)	23
BlsI	GCNGC	5 cut(s)	481, 615, 618, 621, 624
BmcAI	AGTACT	1 cut(s)	847
BmgT120I	GGNCC	1 cut(s)	366
BmiI	GGNNCC	5 cut(s)	103, 175, 367, 471, 966
BmsI	GCATC	2 cut(s)	466, 906
BpuEI	CTTGAG	2 cut(s)	218, 970
BsaBI	GATNNNNATC	1 cut(s)	798
BsaHI	GRCGYC	1 cut(s)	965
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	23, 87
Bse118I	RCCGGY	1 cut(s)	122
Bse3DI	GCAATG	1 cut(s)	825
Bse8I	GATNNNNATC	1 cut(s)	798
BseDI	CCNNGG	2 cut(s)	23, 87
BseGI	GGATG	1 cut(s)	430
BseJI	GATNNNNATC	1 cut(s)	798
BseMI	GCAATG	1 cut(s)	825
BseMII	CTCAG	3 cut(s)	89, 790, 854
BseX3I	CGGCCG	1 cut(s)	124
BseXI	GCAGC	3 cut(s)	491, 625, 631
BsgI	GTGCAG	1 cut(s)	457
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	5 cut(s)	92, 122, 126, 199, 368
BshNI	GGYRCC	2 cut(s)	173, 964
BsiEI	CGRYCG	1 cut(s)	127
BsiSI	CCGG	2 cut(s)	123, 200
BsmAI	GTCTC	1 cut(s)	61
BsnI	GGCC	5 cut(s)	92, 122, 126, 199, 368
Bso31I	GGTCTC	1 cut(s)	61
Bsp1407I	TGTACA	1 cut(s)	453
Bsp143I	GATC	9 cut(s)	162, 186, 322, 393, 484, 526, 535, 592, 799
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	2 cut(s)	617, 623
BspANI	GGCC	5 cut(s)	92, 122, 126, 199, 368
BspCNI	CTCAG	3 cut(s)	88, 789, 853
BspLI	GGNNCC	5 cut(s)	103, 175, 367, 471, 966
BspPI	GGATC	3 cut(s)	401, 521, 587
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	2 cut(s)	173, 964
BspTNI	GGTCTC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	825
BsrFI	RCCGGY	1 cut(s)	122
BsrGI	TGTACA	1 cut(s)	453
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	23, 87
BssMI	GATC	9 cut(s)	162, 186, 322, 393, 484, 526, 535, 592, 799
BssNI	GRCGYC	1 cut(s)	965
BssT1I	CCWWGG	2 cut(s)	23, 87
Bst4CI	ACNGT	2 cut(s)	431, 754
Bst6I	CTCTTC	1 cut(s)	12
BstACI	GRCGYC	1 cut(s)	965
BstAUI	TGTACA	1 cut(s)	453
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	3 cut(s)	75, 776, 840
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	430
BstH2I	RGCGCY	1 cut(s)	968
BstHHI	GCGC	1 cut(s)	967
BstKTI	GATC	9 cut(s)	165, 189, 325, 396, 487, 529, 538, 595, 802
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	9 cut(s)	162, 186, 322, 393, 484, 526, 535, 592, 799
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 619, 622
BstV1I	GCAGC	3 cut(s)	491, 625, 631
BstZI	CGGCCG	1 cut(s)	124
BsuI	GTATCC	1 cut(s)	751
BsuRI	GGCC	5 cut(s)	92, 122, 126, 199, 368
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	430
Cac8I	GCNNGC	1 cut(s)	124
CfoI	GCGC	1 cut(s)	967
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	366
CseI	GACGC	3 cut(s)	24, 71, 200
Csp6I	GTAC	5 cut(s)	238, 454, 545, 846, 986
CviAII	CATG	7 cut(s)	40, 88, 160, 445, 466, 872, 979
CviQI	GTAC	5 cut(s)	238, 454, 545, 846, 986
DdeI	CTNAG	3 cut(s)	75, 776, 840
DinI	GGCGCC	1 cut(s)	966
DpnI	GATC	9 cut(s)	164, 188, 324, 395, 486, 528, 537, 594, 801
DpnII	GATC	9 cut(s)	162, 186, 322, 393, 484, 526, 535, 592, 799
DraI	TTTAAA	1 cut(s)	262
EaeI	YGGCCR	3 cut(s)	90, 124, 197
EagI	CGGCCG	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
EclXI	CGGCCG	1 cut(s)	124
Eco130I	CCWWGG	2 cut(s)	23, 87
Eco31I	GGTCTC	1 cut(s)	61
Eco52I	CGGCCG	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	131
EcoT14I	CCWWGG	2 cut(s)	23, 87
EgeI	GGCGCC	1 cut(s)	966
EheI	GGCGCC	1 cut(s)	966
ErhI	CCWWGG	2 cut(s)	23, 87
FaeI	CATG	7 cut(s)	43, 91, 163, 448, 469, 875, 982
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FatI	CATG	7 cut(s)	39, 87, 159, 444, 465, 871, 978
Fnu4HI	GCNGC	5 cut(s)	480, 614, 617, 620, 623
FokI	GGATG	1 cut(s)	437
FseI	GGCCGGCC	1 cut(s)	126
Fsp4HI	GCNGC	5 cut(s)	480, 614, 617, 620, 623
FspBI	CTAG	2 cut(s)	24, 1024
GlaI	GCGC	1 cut(s)	966
GluI	GCNGC	5 cut(s)	480, 614, 617, 620, 623
HaeII	RGCGCY	1 cut(s)	968
HaeIII	GGCC	5 cut(s)	92, 122, 126, 199, 368
HapII	CCGG	2 cut(s)	123, 200
HgaI	GACGC	3 cut(s)	24, 71, 200
HhaI	GCGC	1 cut(s)	967
Hin1I	GRCGYC	1 cut(s)	965
Hin1II	CATG	7 cut(s)	43, 91, 163, 448, 469, 875, 982
Hin6I	GCGC	1 cut(s)	965
HinP1I	GCGC	1 cut(s)	965
HincII	GTYRAC	1 cut(s)	894
HindII	GTYRAC	1 cut(s)	894
HinfI	GANTC	5 cut(s)	129, 244, 377, 520, 586
HpaII	CCGG	2 cut(s)	123, 200
HphI	GGTGA	2 cut(s)	584, 803
Hpy166II	GTNNAC	2 cut(s)	157, 894
Hpy188I	TCNGA	6 cut(s)	61, 78, 111, 249, 398, 843
Hpy188III	TCNNGA	9 cut(s)	133, 326, 335, 350, 524, 590, 596, 734, 971
Hpy8I	GTNNAC	2 cut(s)	157, 894
Hpy99I	CGWCG	4 cut(s)	182, 194, 296, 545
HpyAV	CCTTC	1 cut(s)	642
HpyCH4III	ACNGT	2 cut(s)	431, 754
HpyCH4V	TGCA	7 cut(s)	438, 479, 718, 818, 835, 919, 931
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 619, 622
HpyF3I	CTNAG	3 cut(s)	75, 776, 840
Hsp92I	GRCGYC	1 cut(s)	965
Hsp92II	CATG	7 cut(s)	43, 91, 163, 448, 469, 875, 982
HspAI	GCGC	1 cut(s)	965
KasI	GGCGCC	1 cut(s)	964
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
Kzo9I	GATC	9 cut(s)	162, 186, 322, 393, 484, 526, 535, 592, 799
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	2 cut(s)	107, 398
LpnPI	CCDG	4 cut(s)	136, 213, 486, 609
Lsp1109I	GCAGC	3 cut(s)	491, 625, 631
LweI	GCATC	2 cut(s)	466, 906
MaeI	CTAG	2 cut(s)	24, 1024
MaeIII	GTNAC	2 cut(s)	403, 938
MalI	GATC	9 cut(s)	164, 188, 324, 395, 486, 528, 537, 594, 801
MboI	GATC	9 cut(s)	162, 186, 322, 393, 484, 526, 535, 592, 799
MboII	GAAGA	8 cut(s)	55, 124, 424, 611, 719, 809, 836, 935
MlsI	TGGCCA	1 cut(s)	92
MluNI	TGGCCA	1 cut(s)	92
Mly113I	GGCGCC	1 cut(s)	965
MlyI	GAGTC	2 cut(s)	123, 386
MmeI	TCCRAC	3 cut(s)	232, 354, 554
MnlI	CCTC	7 cut(s)	84, 92, 384, 414, 849, 978, 1008
Mox20I	TGGCCA	1 cut(s)	92
MroNI	GCCGGC	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	92
MseI	TTAA	7 cut(s)	261, 507, 513, 566, 579, 1010, 1017
MslI	CAYNNNNRTG	1 cut(s)	44
Msp20I	TGGCCA	1 cut(s)	92
MspI	CCGG	2 cut(s)	123, 200
MwoI	GCNNNNNNNGC	3 cut(s)	173, 619, 622
NaeI	GCCGGC	1 cut(s)	124
NarI	GGCGCC	1 cut(s)	965
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	9 cut(s)	162, 186, 322, 393, 484, 526, 535, 592, 799
NgoMIV	GCCGGC	1 cut(s)	122
NlaIII	CATG	7 cut(s)	43, 91, 163, 448, 469, 875, 982
NlaIV	GGNNCC	5 cut(s)	103, 175, 367, 471, 966
NmuCI	GTSAC	2 cut(s)	403, 938
PciSI	GCTCTTC	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PdiI	GCCGGC	1 cut(s)	124
PfeI	GAWTC	3 cut(s)	244, 520, 586
PkrI	GCNGC	5 cut(s)	481, 615, 618, 621, 624
PleI	GAGTC	2 cut(s)	123, 385
PluTI	GGCGCC	1 cut(s)	968
PpsI	GAGTC	2 cut(s)	123, 385
PshBI	ATTAAT	1 cut(s)	579
PspN4I	GGNNCC	5 cut(s)	103, 175, 367, 471, 966
PspPI	GGNCC	1 cut(s)	366
RigI	GGCCGGCC	1 cut(s)	126
RsaI	GTAC	5 cut(s)	239, 455, 546, 847, 987
RsaNI	GTAC	5 cut(s)	238, 454, 545, 846, 986
RseI	CAYNNNNRTG	1 cut(s)	44
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	7 cut(s)	261, 507, 513, 566, 579, 1010, 1017
SatI	GCNGC	5 cut(s)	480, 614, 617, 620, 623
Sau3AI	GATC	9 cut(s)	162, 186, 322, 393, 484, 526, 535, 592, 799
Sau96I	GGNCC	1 cut(s)	366
ScaI	AGTACT	1 cut(s)	847
SchI	GAGTC	2 cut(s)	123, 386
SetI	ASST	5 cut(s)	141, 403, 634, 841, 887
SfaNI	GCATC	2 cut(s)	466, 906
SfoI	GGCGCC	1 cut(s)	966
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	2 cut(s)	233, 949
SmoI	CTYRAG	2 cut(s)	233, 949
SsiI	CCGC	2 cut(s)	617, 623
SspDI	GGCGCC	1 cut(s)	964
SspMI	CTAG	2 cut(s)	24, 1024
StyI	CCWWGG	2 cut(s)	23, 87
TaaI	ACNGT	2 cut(s)	431, 754
TaqI	TCGA	5 cut(s)	134, 189, 294, 325, 1005
TatI	WGTACW	3 cut(s)	237, 453, 845
TauI	GCSGC	2 cut(s)	619, 625
TfiI	GAWTC	3 cut(s)	244, 520, 586
Tru1I	TTAA	7 cut(s)	261, 507, 513, 566, 579, 1010, 1017
Tru9I	TTAA	7 cut(s)	261, 507, 513, 566, 579, 1010, 1017
TseFI	GTSAC	2 cut(s)	403, 938
TseI	GCWGC	3 cut(s)	479, 613, 619
Tsp45I	GTSAC	2 cut(s)	403, 938
TspDTI	ATGAA	7 cut(s)	56, 62, 83, 425, 433, 683, 810
TspGWI	ACGGA	1 cut(s)	280
VspI	ATTAAT	1 cut(s)	579
XmaJI	CCTAGG	1 cut(s)	23
XspI	CTAG	2 cut(s)	24, 1024
ZrmI	AGTACT	1 cut(s)	847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.