Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011525

Physical Location & Seq

Genomic Coordinates Forward (+)

9032678 .. 9033692

Gene Structure 1015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G121400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCTCTTCCTAAATCAAACCCTAAGAAATCAGAAGCCATGAAGATGAAGAGGGTTTCTGATGCTATGAAGCCTCGGAAAACGGCCATGGCCAAGAGATGCTCCGCTCTGAGGAAGAAGAAGACCAACGAACTCTCTAAGCTGAGAAGGGTTTTGAAAGGTCAAATTGAAAAGGGTTCCTTCTCTGCCGAAAAGGGTTTCTTGGAAATTGTTGAGGATCGAAAAAATTGGGATTTGGGTATTCAAGATGATTGCTTGGAGTCCAAGTTAAAGGCTTTGAATGAAAGGATTGGAGCTGTGATGAGGAAGATGAGGATCATGGAGAGTTCTGTGGAACCGGAAGCAGCAGATCAACAACTAACCTGTAATGGTTTCGAATTTGATGATTATGAGCCAACGGTTGATACTCTTGATGATTTTCTCAGTTGGGTATTGGGTGGTGATCATCATAATGATATTGCTGTAATGGAAGATGATTTGAAACTCTATGATCTTGACACAATGTTGCCAGAAGAACCACAACAACTGGAGCAGCAACCACTTTCTGTGCAAAGTATGGATACTATTACTAGTGATGATGATATGAGGTTGCTTTTGAGTGATTGTGAGATTGCTTTGATGCAAGAGGACCTGAGCGATTTTTTGGCCCCTCTTGAAACAATGTTGCTACAACACCCACAGCAGCAGCAGCCTATTAAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

235

Amino Acids

26.78

Weight (kDa)

4.84

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23771 FvH4_2g31102
prunus_persica	Prupe.6G121300_v2.0.a1 Prupe.6G121400_v2.0.a1 Prupe.6G121600_v2.0.a1 Prupe.6G121700_v2.0.a1 Prupe.6G121700_v2.0.a1
rosa_laevigata	RLG00000012128
rosa_multiflora	Rmu_sc0003735.1_g000004
rosa_roxburghii	Rroxscaffold_7G00176180
rosa_rugosa	Rorug06G0218600 Rorug06G0390600
rosa_samantha	Rh6AG330300 Rh6AG505900 Rh6BG337200 Rh6BG516700 Rh6CG522600 Rh6DG330600 Rh6DG508300
rosa_wichuraiana	Rw6G028680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	107
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	2 cut(s)	225, 323
AcoI	YGGCCR	2 cut(s)	84, 90
AcsI	RAATTY	1 cut(s)	377
AfiI	CCNNNNNNNGG	1 cut(s)	111
AgsI	TTSAA	6 cut(s)	157, 170, 245, 280, 481, 656
AhlI	ACTAGT	1 cut(s)	569
AluBI	AGCT	2 cut(s)	142, 296
AluI	AGCT	2 cut(s)	142, 296
AlwI	GGATC	2 cut(s)	225, 323
AoxI	GGCC	3 cut(s)	84, 90, 645
ApeKI	GCWGC	5 cut(s)	344, 532, 682, 685, 688
ApoI	RAATTY	1 cut(s)	377
AspS9I	GGNCC	2 cut(s)	628, 646
AsuHPI	GGTGA	1 cut(s)	452
AsuII	TTCGAA	1 cut(s)	375
AvaII	GGWCC	1 cut(s)	628
BalI	TGGCCA	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	128
BbvI	GCAGC	5 cut(s)	356, 544, 694, 697, 700
BceAI	ACGGC	1 cut(s)	99
BciVI	GTATCC	1 cut(s)	553
BclI	TGATCA	1 cut(s)	442
BcuI	ACTAGT	1 cut(s)	569
BfaI	CTAG	1 cut(s)	570
BfuI	GTATCC	1 cut(s)	553
BisI	GCNGC	5 cut(s)	345, 533, 683, 686, 689
BlsI	GCNGC	5 cut(s)	346, 534, 684, 687, 690
Bme18I	GGWCC	1 cut(s)	628
BmgT120I	GGNCC	2 cut(s)	628, 646
BmiI	GGNNCC	3 cut(s)	178, 336, 648
BmsI	GCATC	3 cut(s)	52, 89, 609
BpiI	GAAGAC	1 cut(s)	128
BpmI	CTGGAG	1 cut(s)	548
Bpu10I	CCTNAGC	1 cut(s)	632
Bpu14I	TTCGAA	1 cut(s)	375
BsaBI	GATNNNNATC	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	74, 87
BsaWI	WCCGGW	1 cut(s)	337
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	531
Bse8I	GATNNNNATC	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	74, 87
BseJI	GATNNNNATC	1 cut(s)	314
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMII	CTCAG	4 cut(s)	101, 134, 436, 623
BseNI	ACTGG	1 cut(s)	531
BseXI	GCAGC	5 cut(s)	356, 544, 694, 697, 700
BshFI	GGCC	3 cut(s)	86, 92, 647
BsiSI	CCGG	1 cut(s)	338
BslI	CCNNNNNNNGG	1 cut(s)	111
BsnI	GGCC	3 cut(s)	86, 92, 647
Bsp119I	TTCGAA	1 cut(s)	375
Bsp143I	GATC	5 cut(s)	217, 315, 349, 442, 490
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	3 cut(s)	86, 92, 647
BspCNI	CTCAG	4 cut(s)	102, 135, 435, 624
BspLI	GGNNCC	3 cut(s)	178, 336, 648
BspPI	GGATC	2 cut(s)	225, 323
BspQI	GCTCTTC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	375
BsrBI	CCGCTC	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	531
BssECI	CCNNGG	2 cut(s)	74, 87
BssMI	GATC	5 cut(s)	217, 315, 349, 442, 490
BssT1I	CCWWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	400
Bst6I	CTCTTC	2 cut(s)	12, 44
BstBI	TTCGAA	1 cut(s)	375
BstDEI	CTNAG	6 cut(s)	24, 110, 138, 143, 422, 632
BstDSI	CCRYGG	1 cut(s)	87
BstKTI	GATC	5 cut(s)	220, 318, 352, 445, 493
BstMBI	GATC	5 cut(s)	217, 315, 349, 442, 490
BstMWI	GCNNNNNNNGC	1 cut(s)	688
BstV1I	GCAGC	5 cut(s)	356, 544, 694, 697, 700
BstV2I	GAAGAC	1 cut(s)	128
BsuI	GTATCC	1 cut(s)	553
BsuRI	GGCC	3 cut(s)	86, 92, 647
BtgI	CCRYGG	1 cut(s)	87
Cfr13I	GGNCC	2 cut(s)	628, 646
CviAII	CATG	3 cut(s)	40, 88, 319
DdeI	CTNAG	6 cut(s)	24, 110, 138, 143, 422, 632
DpnI	GATC	5 cut(s)	219, 317, 351, 444, 492
DpnII	GATC	5 cut(s)	217, 315, 349, 442, 490
EaeI	YGGCCR	2 cut(s)	84, 90
Eam1104I	CTCTTC	2 cut(s)	12, 44
EarI	CTCTTC	2 cut(s)	12, 44
Eco130I	CCWWGG	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	628
EcoO109I	RGGNCCY	1 cut(s)	628
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	3 cut(s)	43, 91, 322
FaiI	YATR	9 cut(s)	41, 68, 89, 320, 390, 450, 489, 557, 584
FalI	AAGNNNNNCTT	4 cut(s)	164, 196, 185, 217
FatI	CATG	3 cut(s)	39, 87, 318
FbaI	TGATCA	1 cut(s)	442
Fnu4HI	GCNGC	5 cut(s)	345, 533, 683, 686, 689
Fsp4HI	GCNGC	5 cut(s)	345, 533, 683, 686, 689
FspBI	CTAG	1 cut(s)	570
GluI	GCNGC	5 cut(s)	345, 533, 683, 686, 689
GsuI	CTGGAG	1 cut(s)	548
HaeIII	GGCC	3 cut(s)	86, 92, 647
HapII	CCGG	1 cut(s)	338
Hin1II	CATG	3 cut(s)	43, 91, 322
HinfI	GANTC	1 cut(s)	260
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	1 cut(s)	452
Hpy188I	TCNGA	4 cut(s)	34, 61, 78, 111
Hpy188III	TCNNGA	4 cut(s)	245, 410, 494, 653
HpyAV	CCTTC	2 cut(s)	141, 190
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4V	TGCA	2 cut(s)	550, 622
HpyF10VI	GCNNNNNNNGC	1 cut(s)	688
HpyF3I	CTNAG	6 cut(s)	24, 110, 138, 143, 422, 632
Hsp92II	CATG	3 cut(s)	43, 91, 322
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	5 cut(s)	217, 315, 349, 442, 490
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	3 cut(s)	107, 293, 529
LpnPI	CCDG	5 cut(s)	351, 376, 512, 522, 644
Lsp1109I	GCAGC	5 cut(s)	356, 544, 694, 697, 700
LweI	GCATC	3 cut(s)	52, 89, 609
MaeI	CTAG	1 cut(s)	570
MalI	GATC	5 cut(s)	219, 317, 351, 444, 492
MbiI	CCGCTC	1 cut(s)	107
MboI	GATC	5 cut(s)	217, 315, 349, 442, 490
MboII	GAAGA	8 cut(s)	55, 61, 127, 130, 133, 319, 482, 524
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	4 cut(s)	165, 207, 226, 377
MluNI	TGGCCA	1 cut(s)	92
MlyI	GAGTC	1 cut(s)	269
MnlI	CCTC	9 cut(s)	45, 84, 105, 208, 297, 306, 579, 619, 660
Mox20I	TGGCCA	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	92
MseI	TTAA	2 cut(s)	269, 696
MslI	CAYNNNNRTG	2 cut(s)	44, 450
Msp20I	TGGCCA	1 cut(s)	92
MspI	CCGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	1 cut(s)	688
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	5 cut(s)	217, 315, 349, 442, 490
NlaIII	CATG	3 cut(s)	43, 91, 322
NlaIV	GGNNCC	3 cut(s)	178, 336, 648
NspV	TTCGAA	1 cut(s)	375
PciSI	GCTCTTC	1 cut(s)	12
PkrI	GCNGC	5 cut(s)	346, 534, 684, 687, 690
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
PpuMI	RGGWCCY	1 cut(s)	628
Psp5II	RGGWCCY	1 cut(s)	628
PspN4I	GGNNCC	3 cut(s)	178, 336, 648
PspPI	GGNCC	2 cut(s)	628, 646
PspPPI	RGGWCCY	1 cut(s)	628
RseI	CAYNNNNRTG	2 cut(s)	44, 450
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	269, 696
SatI	GCNGC	5 cut(s)	345, 533, 683, 686, 689
Sau3AI	GATC	5 cut(s)	217, 315, 349, 442, 490
Sau96I	GGNCC	2 cut(s)	628, 646
SchI	GAGTC	1 cut(s)	269
SetI	ASST	6 cut(s)	144, 163, 298, 365, 590, 633
SfaNI	GCATC	3 cut(s)	52, 89, 609
SfuI	TTCGAA	1 cut(s)	375
SinI	GGWCC	1 cut(s)	628
SmiMI	CAYNNNNRTG	2 cut(s)	44, 450
SpeI	ACTAGT	1 cut(s)	569
Sse9I	AATT	4 cut(s)	165, 207, 226, 377
SsiI	CCGC	1 cut(s)	105
SspMI	CTAG	1 cut(s)	570
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	400
TaqI	TCGA	2 cut(s)	220, 375
TasI	AATT	4 cut(s)	165, 207, 226, 377
Tru1I	TTAA	2 cut(s)	269, 696
Tru9I	TTAA	2 cut(s)	269, 696
TseI	GCWGC	5 cut(s)	344, 532, 682, 685, 688
TspDTI	ATGAA	4 cut(s)	56, 62, 83, 297
VpaK11BI	GGWCC	1 cut(s)	628
XapI	RAATTY	1 cut(s)	377
XspI	CTAG	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.