Rh6AG505900
MADS Family

MADS

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0011525
Physical Location & Seq
Reverse (-)
67786041 .. 67786410
370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG505900.1

Sequence Viewer

Length: 318 bp
ATGGCTCCCAAGAATCCCAAGAATTCATCTGTGAACAAGCTCCTTGCTGATAATAATGAGTATATAAGCTCAAAATGTCATAAGCTCAAAAACAAGGTCTGGGAGCTTTCAGTCCTGTGCGATGTTATTGTCTCCTTGATTGTTATTGGACCTGATGGAAAAGTCTCAAAGGAAAACCTAGAAGAGGTGAAATCAATTATAAGGGAGTACTGGCTAAAAAAGCGACTCGACACTCTGATCTCTTGGAAGTTGTTCTTGAAGAAATCAAGAAGTGGACTGTGGATATCGACTACAATTGGGTGCCATCAGAGGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

105

Amino Acids

12.04

Weight (kDa)

9.68

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 28 - 55 1.5e-07 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 200
AccB1I GGYRCC 1 cut(s) 300
AcsI RAATTY 1 cut(s) 22
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 184
AgsI TTSAA 1 cut(s) 259
AluBI AGCT 4 cut(s) 40, 69, 85, 106
AluI AGCT 4 cut(s) 40, 69, 85, 106
Alw26I GTCTC 2 cut(s) 136, 169
ApoI RAATTY 1 cut(s) 22
ArsI GACNNNNNNTTYG 2 cut(s) 81, 113
Asp700I GAANNNNTTC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 199
AvaII GGWCC 1 cut(s) 149
BanI GGYRCC 1 cut(s) 300
BccI CCATC 2 cut(s) 149, 312
BcoDI GTCTC 2 cut(s) 136, 169
BfaI CTAG 1 cut(s) 179
BmcAI AGTACT 1 cut(s) 209
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 2 cut(s) 6, 302
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse1I ACTGG 1 cut(s) 215
BseLI CCNNNNNNNGG 1 cut(s) 184
BseNI ACTGG 1 cut(s) 215
BshNI GGYRCC 1 cut(s) 300
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 2 cut(s) 136, 169
Bsp143I GATC 1 cut(s) 237
BspLI GGNNCC 2 cut(s) 6, 302
BspT107I GGYRCC 1 cut(s) 300
BsrI ACTGG 1 cut(s) 215
BssMI GATC 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 279
Bst6I CTCTTC 1 cut(s) 177
BstENI CCTNNNNNAGG 1 cut(s) 182
BstKTI GATC 1 cut(s) 240
BstMAI GTCTC 2 cut(s) 136, 169
BstMBI GATC 1 cut(s) 237
BstMWI GCNNNNNNNGC 1 cut(s) 220
BtgZI GCGATG 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 208
CviJI RGCY 6 cut(s) 5, 40, 69, 85, 106, 214
CviKI_1 RGCY 6 cut(s) 5, 40, 69, 85, 106, 214
CviQI GTAC 1 cut(s) 208
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco32I GATATC 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 149
EcoNI CCTNNNNNAGG 1 cut(s) 182
EcoRI GAATTC 1 cut(s) 22
EcoRV GATATC 1 cut(s) 285
FaiI YATR 4 cut(s) 63, 65, 81, 200
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FspBI CTAG 1 cut(s) 179
HinfI GANTC 2 cut(s) 13, 225
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 2 cut(s) 34, 275
Hpy188I TCNGA 2 cut(s) 237, 309
Hpy188III TCNNGA 2 cut(s) 256, 267
Hpy8I GTNNAC 2 cut(s) 34, 275
HpyCH4III ACNGT 1 cut(s) 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 220
Kzo9I GATC 1 cut(s) 237
LmnI GCTCC 3 cut(s) 10, 45, 103
LpnPI CCDG 4 cut(s) 85, 128, 165, 196
MaeI CTAG 1 cut(s) 179
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MboII GAAGA 2 cut(s) 194, 271
MfeI CAATTG 1 cut(s) 294
MluCI AATT 3 cut(s) 22, 195, 294
MlyI GAGTC 1 cut(s) 219
MnlI CCTC 2 cut(s) 178, 303
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 1 cut(s) 316
MunI CAATTG 1 cut(s) 294
MwoI GCNNNNNNNGC 1 cut(s) 220
NdeII GATC 1 cut(s) 237
NlaIV GGNNCC 2 cut(s) 6, 302
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 1 cut(s) 13
PleI GAGTC 1 cut(s) 219
PpsI GAGTC 1 cut(s) 219
PsiI TTATAA 1 cut(s) 200
PspN4I GGNNCC 2 cut(s) 6, 302
PspPI GGNCC 1 cut(s) 149
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SaqAI TTAA 1 cut(s) 316
Sau3AI GATC 1 cut(s) 237
Sau96I GGNCC 1 cut(s) 149
ScaI AGTACT 1 cut(s) 209
SchI GAGTC 1 cut(s) 219
SetI ASST 8 cut(s) 42, 71, 87, 99, 108, 154, 180, 189
SinI GGWCC 1 cut(s) 149
Sse9I AATT 3 cut(s) 22, 195, 294
SspMI CTAG 1 cut(s) 179
TaaI ACNGT 1 cut(s) 279
TaqI TCGA 2 cut(s) 228, 287
TasI AATT 3 cut(s) 22, 195, 294
TatI WGTACW 1 cut(s) 207
TfiI GAWTC 1 cut(s) 13
Tru1I TTAA 1 cut(s) 316
Tru9I TTAA 1 cut(s) 316
TspDTI ATGAA 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 149
XagI CCTNNNNNAGG 1 cut(s) 182
XapI RAATTY 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 251
XspI CTAG 1 cut(s) 179
ZrmI AGTACT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.