Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003735.1

Orthogroup ID

OG0011525

Physical Location & Seq

Genomic Coordinates Forward (+)

10978 .. 11796

Gene Structure 819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003735.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atggtgacgaaatcccagaccaccatatccggagaaaacatcaaagagatcagaagtctgagatttttggaaaaaccaattcagaagagaaagtccactctgaagaagagcgcgagccagctcgagattctctgtggtgcgcaggtttgctgcgttttggtggggccaactgggaatgttgaggtctggccggaaaacccagcagacgccgtatccatcatcgccaagtacaaacaatgcaaaaagaaaacaaaggtctgtagggaggtcaaccgatccaagaacgtggagcagtttgaagaaaacaagggtttggctatgggtgatgatgacattgatcaatccatgaataccctggagaactatgaggaagacaaggggtttgatattgatcaatttctgaataacactatggagaacttagaagatcaaaacaagggtatcgatatgggtgatgatattgatcaatttctcatgaataacactagggaaaatgttgaaccaaacaacggctttgacaccgatcatgattttgatcaatttctgaatgaattttttggtgatactaatgatcttaaagtgggctttccagagtgttcaaccagcaatgctcacatgccaacaccagggtttgaggatcatcagattgataatgtatgtggagtgtggccgtgggagacattatggtccacgccacaatactcagggttcgacggagcatactacctgccgaaatttgagaatgatggctttctttgtcaagagcagccaaaattgatgggttctaaccaaacttttcgagatattggaagcaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

272

Amino Acids

30.92

Weight (kDa)

4.51

Isoelectric Point (pI)

30.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23771 FvH4_2g31102
prunus_persica	Prupe.6G121300_v2.0.a1 Prupe.6G121400_v2.0.a1 Prupe.6G121600_v2.0.a1 Prupe.6G121700_v2.0.a1 Prupe.6G121700_v2.0.a1
rosa_laevigata	RLG00000012128
rosa_multiflora	Rmu_sc0003735.1_g000004
rosa_roxburghii	Rroxscaffold_7G00176180
rosa_rugosa	Rorug06G0218600 Rorug06G0390600
rosa_samantha	Rh6AG330300 Rh6AG505900 Rh6BG337200 Rh6BG516700 Rh6CG522600 Rh6DG330600 Rh6DG508300
rosa_wichuraiana	Rw6G028680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	685
Acc16I	TGCGCA	1 cut(s)	141
Acc36I	ACCTGC	2 cut(s)	133, 735
AccII	CGCG	1 cut(s)	113
AccIII	TCCGGA	1 cut(s)	29
AclWI	GGATC	2 cut(s)	270, 645
AcoI	YGGCCR	2 cut(s)	188, 668
AcsI	RAATTY	2 cut(s)	551, 734
AcuI	CTGAAG	1 cut(s)	122
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	2 cut(s)	509, 626
AgsI	TTSAA	3 cut(s)	299, 500, 600
AjnI	CCWGG	2 cut(s)	354, 625
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	671
AlwI	GGATC	2 cut(s)	270, 645
Ama87I	CYCGRG	1 cut(s)	122
Aor13HI	TCCGGA	1 cut(s)	29
AoxI	GGCC	3 cut(s)	164, 188, 668
ApeKI	GCWGC	2 cut(s)	150, 766
ApoI	RAATTY	2 cut(s)	551, 734
ArsI	GACNNNNNNTTYG	2 cut(s)	365, 397
AspLEI	GCGC	2 cut(s)	113, 142
AspS9I	GGNCC	2 cut(s)	164, 687
AsuHPI	GGTGA	4 cut(s)	16, 335, 464, 572
AvaI	CYCGRG	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	687
BaeI	ACNNNNGTAYC	2 cut(s)	424, 457
BbsI	GAAGAC	1 cut(s)	378
BbvI	GCAGC	2 cut(s)	137, 778
BccI	CCATC	3 cut(s)	224, 740, 772
BceAI	ACGGC	3 cut(s)	194, 526, 655
BciT130I	CCWGG	2 cut(s)	356, 627
BciVI	GTATCC	1 cut(s)	223
BclI	TGATCA	4 cut(s)	337, 391, 463, 535
BcoDI	GTCTC	1 cut(s)	671
BfaI	CTAG	1 cut(s)	486
BfmI	CTRYAG	1 cut(s)	259
BfuAI	ACCTGC	2 cut(s)	133, 735
BfuI	GTATCC	1 cut(s)	223
BisI	GCNGC	2 cut(s)	151, 767
BlsI	GCNGC	2 cut(s)	152, 768
Bme1390I	CCNGG	2 cut(s)	356, 627
Bme18I	GGWCC	1 cut(s)	687
BmeT110I	CYCGRG	1 cut(s)	122
BmgT120I	GGNCC	2 cut(s)	164, 687
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	2 cut(s)	356, 627
BmrI	ACTGGG	1 cut(s)	180
BmuI	ACTGGG	1 cut(s)	180
BpiI	GAAGAC	1 cut(s)	378
BpmI	CTGGAG	1 cut(s)	377
Bsa29I	ATCGAT	1 cut(s)	444
BsaBI	GATNNNNATC	3 cut(s)	390, 462, 534
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	3 cut(s)	354, 626, 671
BsaWI	WCCGGW	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	2 cut(s)	509, 626
Bse1I	ACTGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	613
Bse8I	GATNNNNATC	3 cut(s)	390, 462, 534
BseAI	TCCGGA	1 cut(s)	29
BseBI	CCWGG	2 cut(s)	356, 627
BseCI	ATCGAT	1 cut(s)	444
BseDI	CCNNGG	3 cut(s)	354, 626, 671
BseJI	GATNNNNATC	3 cut(s)	390, 462, 534
BseLI	CCNNNNNNNGG	2 cut(s)	509, 626
BseMI	GCAATG	1 cut(s)	613
BseMII	CTCAG	2 cut(s)	50, 717
BseNI	ACTGG	1 cut(s)	175
BseXI	GCAGC	2 cut(s)	137, 778
BseYI	CCCAGC	1 cut(s)	199
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	3 cut(s)	166, 190, 670
BshVI	ATCGAT	1 cut(s)	444
BsiHKCI	CYCGRG	1 cut(s)	122
BsiSI	CCGG	2 cut(s)	30, 191
BslI	CCNNNNNNNGG	2 cut(s)	509, 626
BsmAI	GTCTC	1 cut(s)	671
BsnI	GGCC	3 cut(s)	166, 190, 670
BsoBI	CYCGRG	1 cut(s)	122
Bsp13I	TCCGGA	1 cut(s)	29
BspANI	GGCC	3 cut(s)	166, 190, 670
BspCNI	CTCAG	2 cut(s)	51, 716
BspDI	ATCGAT	1 cut(s)	444
BspEI	TCCGGA	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	113
BspHI	TCATGA	2 cut(s)	474, 526
BspLI	GGNNCC	1 cut(s)	165
BspMI	ACCTGC	2 cut(s)	133, 735
BspPI	GGATC	2 cut(s)	270, 645
BspQI	GCTCTTC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	613
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	3 cut(s)	354, 626, 671
BssNI	GRCGYC	1 cut(s)	207
Bst2UI	CCWGG	2 cut(s)	356, 627
Bst6I	CTCTTC	2 cut(s)	80, 101
BstACI	GRCGYC	1 cut(s)	207
BstC8I	GCNNGC	2 cut(s)	115, 119
BstDEI	CTNAG	3 cut(s)	59, 421, 703
BstDSI	CCRYGG	1 cut(s)	671
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	2 cut(s)	113, 142
BstMAI	GTCTC	1 cut(s)	671
BstNI	CCWGG	2 cut(s)	356, 627
BstNSI	RCATGY	1 cut(s)	619
BstSCI	CCNGG	2 cut(s)	354, 625
BstSFI	CTRYAG	1 cut(s)	259
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	2 cut(s)	137, 778
BstV2I	GAAGAC	1 cut(s)	378
BstXI	CCANNNNNNTGG	1 cut(s)	286
Bsu15I	ATCGAT	1 cut(s)	444
BsuI	GTATCC	1 cut(s)	223
BsuRI	GGCC	3 cut(s)	166, 190, 670
BsuTUI	ATCGAT	1 cut(s)	444
BtgI	CCRYGG	1 cut(s)	671
BtgZI	GCGATG	1 cut(s)	205
BveI	ACCTGC	2 cut(s)	133, 735
Cac8I	GCNNGC	2 cut(s)	115, 119
CciI	TCATGA	2 cut(s)	474, 526
CfoI	GCGC	2 cut(s)	113, 142
Cfr13I	GGNCC	2 cut(s)	164, 687
ClaI	ATCGAT	1 cut(s)	444
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	4 cut(s)	346, 475, 527, 616
CviQI	GTAC	1 cut(s)	229
DdeI	CTNAG	3 cut(s)	59, 421, 703
DrdI	GACNNNNNNGTC	1 cut(s)	685
DseDI	GACNNNNNNGTC	1 cut(s)	685
EaeI	YGGCCR	2 cut(s)	188, 668
Eam1104I	CTCTTC	2 cut(s)	80, 101
EarI	CTCTTC	2 cut(s)	80, 101
Eco47I	GGWCC	1 cut(s)	687
Eco57I	CTGAAG	1 cut(s)	122
Eco88I	CYCGRG	1 cut(s)	122
EcoRII	CCWGG	2 cut(s)	354, 625
FaeI	CATG	4 cut(s)	349, 478, 530, 619
FatI	CATG	4 cut(s)	345, 474, 526, 615
FbaI	TGATCA	4 cut(s)	337, 391, 463, 535
Fnu4HI	GCNGC	2 cut(s)	151, 767
Fsp4HI	GCNGC	2 cut(s)	151, 767
FspBI	CTAG	1 cut(s)	486
FspI	TGCGCA	1 cut(s)	141
GlaI	GCGC	2 cut(s)	112, 141
GluI	GCNGC	2 cut(s)	151, 767
GsaI	CCCAGC	1 cut(s)	203
GsuI	CTGGAG	1 cut(s)	377
HaeIII	GGCC	3 cut(s)	166, 190, 670
HapII	CCGG	2 cut(s)	30, 191
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	2 cut(s)	113, 142
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	4 cut(s)	349, 478, 530, 619
Hin6I	GCGC	2 cut(s)	111, 140
HinP1I	GCGC	2 cut(s)	111, 140
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	1 cut(s)	127
HpaII	CCGG	2 cut(s)	30, 191
HphI	GGTGA	4 cut(s)	16, 335, 464, 572
Hpy166II	GTNNAC	3 cut(s)	96, 271, 690
Hpy188I	TCNGA	7 cut(s)	53, 60, 84, 102, 402, 546, 645
Hpy188III	TCNNGA	7 cut(s)	30, 124, 475, 527, 590, 761, 800
Hpy8I	GTNNAC	3 cut(s)	96, 271, 690
Hpy99I	CGWCG	1 cut(s)	716
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	1 cut(s)	240
HpyF3I	CTNAG	3 cut(s)	59, 421, 703
HpySE526I	ACGT	1 cut(s)	285
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	4 cut(s)	349, 478, 530, 619
HspAI	GCGC	2 cut(s)	111, 140
Kpn2I	TCCGGA	1 cut(s)	29
Ksp22I	TGATCA	4 cut(s)	337, 391, 463, 535
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	2 cut(s)	289, 716
Lsp1109I	GCAGC	2 cut(s)	137, 778
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	4
MboII	GAAGA	6 cut(s)	97, 115, 118, 311, 383, 437
MluCI	AATT	8 cut(s)	78, 395, 467, 539, 551, 734, 773, 814
MnlI	CCTC	4 cut(s)	175, 259, 361, 628
MroI	TCCGGA	1 cut(s)	29
MseI	TTAA	2 cut(s)	576, 817
MspI	CCGG	2 cut(s)	30, 191
MspR9I	CCNGG	2 cut(s)	356, 627
MvaI	CCWGG	2 cut(s)	356, 627
MvnI	CGCG	1 cut(s)	113
NlaIII	CATG	4 cut(s)	349, 478, 530, 619
NlaIV	GGNNCC	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	4
NsbI	TGCGCA	1 cut(s)	141
NspI	RCATGY	1 cut(s)	619
PaeR7I	CTCGAG	1 cut(s)	122
PagI	TCATGA	2 cut(s)	474, 526
PciSI	GCTCTTC	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	127
PkrI	GCNGC	2 cut(s)	152, 768
Psp6I	CCWGG	2 cut(s)	354, 625
PspFI	CCCAGC	1 cut(s)	199
PspGI	CCWGG	2 cut(s)	354, 625
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	2 cut(s)	164, 687
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	576, 817
SatI	GCNGC	2 cut(s)	151, 767
Sau96I	GGNCC	2 cut(s)	164, 687
ScrFI	CCNGG	2 cut(s)	356, 627
SetI	ASST	7 cut(s)	123, 147, 186, 258, 270, 288, 729
SfcI	CTRYAG	1 cut(s)	259
Sfr274I	CTCGAG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	687
SlaI	CTCGAG	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	8 cut(s)	78, 395, 467, 539, 551, 734, 773, 814
SspMI	CTAG	1 cut(s)	486
StyD4I	CCNGG	2 cut(s)	354, 625
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	4 cut(s)	123, 444, 711, 799
TasI	AATT	8 cut(s)	78, 395, 467, 539, 551, 734, 773, 814
TatI	WGTACW	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	2 cut(s)	576, 817
Tru9I	TTAA	2 cut(s)	576, 817
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	2 cut(s)	150, 766
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	3 cut(s)	362, 491, 564
TspGWI	ACGGA	1 cut(s)	729
VpaK11BI	GGWCC	1 cut(s)	687
XapI	RAATTY	2 cut(s)	551, 734
XceI	RCATGY	1 cut(s)	619
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XhoI	CTCGAG	1 cut(s)	122
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.