Rroxscaffold_7G00176180
MADS Family

MADS

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0011525
Physical Location & Seq
Reverse (-)
15671305 .. 15672105
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00176180.1

Sequence Viewer

Length: 801 bp
ATGGTGACGAAATCCCAGACCACCAAATCCGGAGAAAAGATCAAAGAGATCAGAAGTCTGAGATCTTTGGAAAAACCAATTCAGAAGAGAAAGTCCACTCTGAAGAAGAGCGCGAGCCAGCTCGAGATTCTCTGCGGTGCGCAGGTTTGCTGCGTTTTGGTGGGGCCAACTGGGAATGTTGAGGTCTGGCCGGAAAACCCAGCAGACGCCGTATCCATCATCGCCAAGTACAAACAATGCAAAAAGAAAACAAAGGTCTGTAGGGAGGTCAACCGATCAAAGACCGTGGAGCAGTTTGAAGAAAACAAGGGTTTGGCTATGGGTGATGATGACATTGATCAATCCATGAATACCCTGGAGAACTATGAGGAAGACAAGGGGTTTGATATTGATCAATTTCTGAATAACACTATGGAGAACTTAGAAGATCAAAACAAGGGTATCGATATGGGTGATGATATTGATCAATTTCTCATGAATAACACTAGGGAAAATGTTGAACCAAACAACGGTTTTGACACCGATCATGATTTTGATCAATTTCTGAATGATTTTTTTGGTGATACTAATGATCTTAAAGTGGGCTTTCCAGAGTGTTCAACTAGCAATGCTCACATGCCTACACCAGGGTTTGAGGATCATCAGATTGATAATGTATGTGGAGAGTGGCCGTGGGAGACATTATGGTCCACGCCACAATACTCAGGGTTCGACGGAGCATACTACTTGCCGAAATTTGAGAATGATGACAGTAATATTAGTCTTTCTTTGTCAAGAGCAGCCAAAATTGATGGGTTCTAA

Protein Analysis

266

Amino Acids

30.12

Weight (kDa)

4.55

Isoelectric Point (pI)

30.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 28 - 63 1.1e-09 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 685
Acc16I TGCGCA 1 cut(s) 141
Acc36I ACCTGC 1 cut(s) 133
AccII CGCG 1 cut(s) 113
AccIII TCCGGA 1 cut(s) 29
AciI CCGC 1 cut(s) 135
AclWI GGATC 1 cut(s) 645
AcoI YGGCCR 2 cut(s) 188, 668
AcsI RAATTY 1 cut(s) 734
AcuI CTGAAG 1 cut(s) 122
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 2 cut(s) 509, 626
AgsI TTSAA 3 cut(s) 299, 500, 600
AjnI CCWGG 2 cut(s) 354, 625
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 671
AlwI GGATC 1 cut(s) 645
Ama87I CYCGRG 1 cut(s) 122
Aor13HI TCCGGA 1 cut(s) 29
AoxI GGCC 3 cut(s) 164, 188, 668
ApeKI GCWGC 2 cut(s) 150, 779
ApoI RAATTY 1 cut(s) 734
ArsI GACNNNNNNTTYG 2 cut(s) 365, 397
AspLEI GCGC 2 cut(s) 113, 142
AspS9I GGNCC 2 cut(s) 164, 687
AsuHPI GGTGA 4 cut(s) 16, 335, 464, 572
AvaI CYCGRG 1 cut(s) 122
AvaII GGWCC 1 cut(s) 687
BaeI ACNNNNGTAYC 2 cut(s) 424, 457
BbsI GAAGAC 1 cut(s) 378
BbvI GCAGC 2 cut(s) 137, 791
BccI CCATC 2 cut(s) 224, 785
BceAI ACGGC 2 cut(s) 194, 655
BciT130I CCWGG 2 cut(s) 356, 627
BciVI GTATCC 1 cut(s) 223
BclI TGATCA 4 cut(s) 337, 391, 463, 535
BcoDI GTCTC 1 cut(s) 671
BfaI CTAG 2 cut(s) 486, 603
BfmI CTRYAG 1 cut(s) 259
BfuAI ACCTGC 1 cut(s) 133
BfuI GTATCC 1 cut(s) 223
BglII AGATCT 1 cut(s) 62
BisI GCNGC 2 cut(s) 151, 780
BlsI GCNGC 2 cut(s) 152, 781
Bme1390I CCNGG 2 cut(s) 356, 627
Bme18I GGWCC 1 cut(s) 687
BmeT110I CYCGRG 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 164, 687
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 2 cut(s) 356, 627
BmrI ACTGGG 1 cut(s) 180
BmuI ACTGGG 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 378
BpmI CTGGAG 1 cut(s) 377
Bsa29I ATCGAT 1 cut(s) 444
BsaBI GATNNNNATC 3 cut(s) 390, 462, 534
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 4 cut(s) 285, 354, 626, 671
BsaWI WCCGGW 1 cut(s) 29
Bsc4I CCNNNNNNNGG 2 cut(s) 509, 626
Bse1I ACTGG 1 cut(s) 175
Bse3DI GCAATG 1 cut(s) 613
Bse8I GATNNNNATC 3 cut(s) 390, 462, 534
BseAI TCCGGA 1 cut(s) 29
BseBI CCWGG 2 cut(s) 356, 627
BseCI ATCGAT 1 cut(s) 444
BseDI CCNNGG 4 cut(s) 285, 354, 626, 671
BseJI GATNNNNATC 3 cut(s) 390, 462, 534
BseLI CCNNNNNNNGG 2 cut(s) 509, 626
BseMI GCAATG 1 cut(s) 613
BseMII CTCAG 2 cut(s) 50, 717
BseNI ACTGG 1 cut(s) 175
BseXI GCAGC 2 cut(s) 137, 791
BseYI CCCAGC 1 cut(s) 199
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 3 cut(s) 166, 190, 670
BshVI ATCGAT 1 cut(s) 444
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 2 cut(s) 30, 191
BslI CCNNNNNNNGG 2 cut(s) 509, 626
BsmAI GTCTC 1 cut(s) 671
BsnI GGCC 3 cut(s) 166, 190, 670
BsoBI CYCGRG 1 cut(s) 122
Bsp13I TCCGGA 1 cut(s) 29
BspACI CCGC 1 cut(s) 135
BspANI GGCC 3 cut(s) 166, 190, 670
BspCNI CTCAG 2 cut(s) 51, 716
BspDI ATCGAT 1 cut(s) 444
BspEI TCCGGA 1 cut(s) 29
BspFNI CGCG 1 cut(s) 113
BspHI TCATGA 2 cut(s) 474, 526
BspLI GGNNCC 1 cut(s) 165
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 1 cut(s) 645
BspQI GCTCTTC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 613
BsrI ACTGG 1 cut(s) 175
BssECI CCNNGG 4 cut(s) 285, 354, 626, 671
BssNI GRCGYC 1 cut(s) 207
Bst2UI CCWGG 2 cut(s) 356, 627
Bst4CI ACNGT 3 cut(s) 286, 512, 752
Bst6I CTCTTC 2 cut(s) 80, 101
BstACI GRCGYC 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 115, 119
BstDEI CTNAG 3 cut(s) 59, 421, 703
BstDSI CCRYGG 2 cut(s) 285, 671
BstENI CCTNNNNNAGG 1 cut(s) 624
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 2 cut(s) 113, 142
BstMAI GTCTC 1 cut(s) 671
BstNI CCWGG 2 cut(s) 356, 627
BstNSI RCATGY 1 cut(s) 619
BstSCI CCNGG 2 cut(s) 354, 625
BstSFI CTRYAG 1 cut(s) 259
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 2 cut(s) 137, 791
BstV2I GAAGAC 1 cut(s) 378
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
Bsu15I ATCGAT 1 cut(s) 444
BsuI GTATCC 1 cut(s) 223
BsuRI GGCC 3 cut(s) 166, 190, 670
BsuTUI ATCGAT 1 cut(s) 444
BtgI CCRYGG 2 cut(s) 285, 671
BtgZI GCGATG 1 cut(s) 205
BveI ACCTGC 1 cut(s) 133
Cac8I GCNNGC 2 cut(s) 115, 119
CciI TCATGA 2 cut(s) 474, 526
CfoI GCGC 2 cut(s) 113, 142
Cfr13I GGNCC 2 cut(s) 164, 687
ClaI ATCGAT 1 cut(s) 444
CseI GACGC 1 cut(s) 215
Csp6I GTAC 1 cut(s) 229
CspCI CAANNNNNGTGG 2 cut(s) 267, 302
CviAII CATG 4 cut(s) 346, 475, 527, 616
CviJI RGCY 8 cut(s) 117, 121, 166, 190, 317, 585, 670, 782
CviKI_1 RGCY 8 cut(s) 117, 121, 166, 190, 317, 585, 670, 782
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 3 cut(s) 59, 421, 703
DrdI GACNNNNNNGTC 1 cut(s) 685
DseDI GACNNNNNNGTC 1 cut(s) 685
EaeI YGGCCR 2 cut(s) 188, 668
Eam1104I CTCTTC 2 cut(s) 80, 101
EarI CTCTTC 2 cut(s) 80, 101
Eco47I GGWCC 1 cut(s) 687
Eco57I CTGAAG 1 cut(s) 122
Eco88I CYCGRG 1 cut(s) 122
EcoNI CCTNNNNNAGG 1 cut(s) 624
EcoRII CCWGG 2 cut(s) 354, 625
FaeI CATG 4 cut(s) 349, 478, 530, 619
FatI CATG 4 cut(s) 345, 474, 526, 615
FbaI TGATCA 4 cut(s) 337, 391, 463, 535
Fnu4HI GCNGC 2 cut(s) 151, 780
Fsp4HI GCNGC 2 cut(s) 151, 780
FspBI CTAG 2 cut(s) 486, 603
FspI TGCGCA 1 cut(s) 141
GlaI GCGC 2 cut(s) 112, 141
GluI GCNGC 2 cut(s) 151, 780
GsaI CCCAGC 1 cut(s) 203
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 3 cut(s) 166, 190, 670
HapII CCGG 2 cut(s) 30, 191
HgaI GACGC 1 cut(s) 215
HhaI GCGC 2 cut(s) 113, 142
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 4 cut(s) 349, 478, 530, 619
Hin6I GCGC 2 cut(s) 111, 140
HinP1I GCGC 2 cut(s) 111, 140
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 1 cut(s) 127
HpaII CCGG 2 cut(s) 30, 191
HphI GGTGA 4 cut(s) 16, 335, 464, 572
Hpy166II GTNNAC 3 cut(s) 96, 271, 690
Hpy188I TCNGA 7 cut(s) 53, 60, 84, 102, 402, 546, 645
Hpy188III TCNNGA 6 cut(s) 30, 124, 475, 527, 590, 774
Hpy8I GTNNAC 3 cut(s) 96, 271, 690
Hpy99I CGWCG 1 cut(s) 716
HpyCH4III ACNGT 3 cut(s) 286, 512, 752
HpyCH4V TGCA 1 cut(s) 240
HpyF3I CTNAG 3 cut(s) 59, 421, 703
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 4 cut(s) 349, 478, 530, 619
HspAI GCGC 2 cut(s) 111, 140
Kpn2I TCCGGA 1 cut(s) 29
Ksp22I TGATCA 4 cut(s) 337, 391, 463, 535
LguI GCTCTTC 1 cut(s) 101
LmnI GCTCC 2 cut(s) 289, 716
Lsp1109I GCAGC 2 cut(s) 137, 791
MaeI CTAG 2 cut(s) 486, 603
MaeIII GTNAC 1 cut(s) 4
MboII GAAGA 6 cut(s) 97, 115, 118, 311, 383, 437
MflI RGATCY 1 cut(s) 62
MluCI AATT 6 cut(s) 78, 395, 467, 539, 734, 786
MnlI CCTC 4 cut(s) 175, 259, 361, 628
MroI TCCGGA 1 cut(s) 29
MseI TTAA 1 cut(s) 576
MspI CCGG 2 cut(s) 30, 191
MspR9I CCNGG 2 cut(s) 356, 627
MvaI CCWGG 2 cut(s) 356, 627
MvnI CGCG 1 cut(s) 113
NlaIII CATG 4 cut(s) 349, 478, 530, 619
NlaIV GGNNCC 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 4
NsbI TGCGCA 1 cut(s) 141
NspI RCATGY 1 cut(s) 619
PaeR7I CTCGAG 1 cut(s) 122
PagI TCATGA 2 cut(s) 474, 526
PciSI GCTCTTC 1 cut(s) 101
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 2 cut(s) 152, 781
Psp6I CCWGG 2 cut(s) 354, 625
PspFI CCCAGC 1 cut(s) 199
PspGI CCWGG 2 cut(s) 354, 625
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 2 cut(s) 164, 687
PsuI RGATCY 1 cut(s) 62
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
SapI GCTCTTC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 576
SatI GCNGC 2 cut(s) 151, 780
Sau96I GGNCC 2 cut(s) 164, 687
ScrFI CCNGG 2 cut(s) 356, 627
SetI ASST 5 cut(s) 123, 147, 186, 258, 270
SfcI CTRYAG 1 cut(s) 259
Sfr274I CTCGAG 1 cut(s) 122
SinI GGWCC 1 cut(s) 687
SlaI CTCGAG 1 cut(s) 122
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 6 cut(s) 78, 395, 467, 539, 734, 786
SsiI CCGC 1 cut(s) 135
SspI AATATT 1 cut(s) 757
SspMI CTAG 2 cut(s) 486, 603
StyD4I CCNGG 2 cut(s) 354, 625
TaaI ACNGT 3 cut(s) 286, 512, 752
TaqI TCGA 3 cut(s) 123, 444, 711
TasI AATT 6 cut(s) 78, 395, 467, 539, 734, 786
TatI WGTACW 1 cut(s) 228
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 2 cut(s) 150, 779
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 2 cut(s) 362, 491
TspGWI ACGGA 1 cut(s) 729
VpaK11BI GGWCC 1 cut(s) 687
XagI CCTNNNNNAGG 1 cut(s) 624
XapI RAATTY 1 cut(s) 734
XceI RCATGY 1 cut(s) 619
XcmI CCANNNNNNNNNTGG 1 cut(s) 352
XhoI CTCGAG 1 cut(s) 122
XspI CTAG 2 cut(s) 486, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.