Rorug06G0390600
MADS Family

MADS

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011525
Physical Location & Seq
Forward (+)
53466916 .. 53468594
1679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0390600.1

Sequence Viewer

Length: 1035 bp
ATGGGCAAAGGTGGCTCTCTCAGCGAAGGCGTCATCAAGAAGATCCTCCTCTCCTACACCTACGTCGCCATATGGATCTTCCTCAGCTTCACCGTCATCGTCTACAACAAGTACATCCTCGACAAGAAGATGTACAACTGGCCCTTCCCTATCTCCCTCACCATGATCCACATGTCCTTCTGCGCCGGCCTCGCCTTCCTCCTCGTCCGCGTCTTTAAGTTAGTCGAGCCCATCACCATGACCCGAGAAGTCTACCTCTCCTCCGTCGTCCCCATCGGAGCCCTCTACTCCCTCTCCCTCTGGCTCTCTAACTCCGCTTACATCTACCTCTCTGTCTCCTTCATCCAAATGCTCAAGGCTCTCATGCCTGTGGCCGTCTACTCCCTTGGGGTGTCGTTTAAGAAGGAGACGTTTAAGACTGACACGATGGTCAACATGCTCTCGATCTCCGTCGGCGTGGCCATTGCGGCTTATGGGGAGGCCAGATTCGACACCTGGGGTGTGATTCTGCAACTGGGTGCGGTTGTTTTCGAGGCCACGAGGCTTGTGTTGATCCAAATCTTGTTGACATCTAAAGGGATCACCTTGAATCCCATTACCTCTTTGTACTATGTGGCTCCTTGTTGCTTGGCTTTTCTGTTGGTGCCTTGGATCTATGTGGAGTACCCAACACTGAGGGACACCTCCAGTTTCCATTTCGATTACGTGATTTTCGGGACCAATTCCTTCTGTGCTTTCGCTTTGAATCTTGCTGTGTTCTTGCTCGTGGGGAAGACCTCGGCTTTGACGATGAATGTGGCGGGTGTGGTGAAAGATTGGCTCTTGATTGCCTTCTCTTGGTCTGTGATCAAGGACACTGTGACCCCAATCAATCTGGTGGGTTATGGCCTTGCGTTTTTGGGGGTTGCGTATTACAATCACTCGAAATTGCAGGCTCTGAAGGCCAAGGAGGCGCAGAAGAAGGTGCCTCCGGCGGATGAGGAGGCGAATAATAGGCTGTTGGAGGCTGAAGGTCAAGGACGGGAAGGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

344

Amino Acids

38.21

Weight (kDa)

9.04

Isoelectric Point (pI)

19.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 20 - 306 1.4e-23 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 428
AccB1I GGYRCC 2 cut(s) 643, 964
AccI GTMKAC 3 cut(s) 102, 252, 378
AccII CGCG 1 cut(s) 210
AciI CCGC 6 cut(s) 208, 315, 467, 521, 800, 974
AclWI GGATC 6 cut(s) 37, 83, 160, 547, 587, 659
AcoI YGGCCR 2 cut(s) 372, 459
AcuI CTGAAG 2 cut(s) 959, 1029
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 4 cut(s) 113, 134, 608, 665
AfiI CCNNNNNNNGG 1 cut(s) 837
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 2 cut(s) 589, 745
AjnI CCWGG 1 cut(s) 494
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
Alw26I GTCTC 2 cut(s) 340, 401
AlwI GGATC 6 cut(s) 37, 83, 160, 547, 587, 659
AlwNI CAGNNNCTG 1 cut(s) 937
Ama87I CYCGRG 1 cut(s) 243
AoxI GGCC 8 cut(s) 140, 187, 372, 459, 480, 534, 886, 942
ArsI GACNNNNNNTTYG 2 cut(s) 766, 798
AspLEI GCGC 2 cut(s) 185, 955
AspS9I GGNCC 2 cut(s) 141, 717
AsuHPI GGTGA 5 cut(s) 82, 151, 226, 574, 820
AvaI CYCGRG 1 cut(s) 243
AvaII GGWCC 1 cut(s) 717
BalI TGGCCA 1 cut(s) 461
BanI GGYRCC 2 cut(s) 643, 964
BanII GRGCYC 2 cut(s) 231, 283
BauI CACGAG 2 cut(s) 538, 764
BbsI GAAGAC 1 cut(s) 779
BbvCI CCTCAGC 1 cut(s) 83
BccI CCATC 3 cut(s) 239, 281, 421
BceAI ACGGC 1 cut(s) 359
BciT130I CCWGG 1 cut(s) 496
BclI TGATCA 1 cut(s) 846
BcoDI GTCTC 2 cut(s) 340, 401
BglI GCCNNNNNGGC 2 cut(s) 467, 950
BisI GCNGC 1 cut(s) 468
BlsI GCNGC 1 cut(s) 469
Bme1390I CCNGG 1 cut(s) 496
Bme18I GGWCC 1 cut(s) 717
BmeT110I CYCGRG 1 cut(s) 243
BmgT120I GGNCC 2 cut(s) 141, 717
BmiI GGNNCC 5 cut(s) 280, 618, 645, 718, 966
BmrFI CCNGG 1 cut(s) 496
BmrI ACTGGG 1 cut(s) 524
BmuI ACTGGG 1 cut(s) 524
BpiI GAAGAC 1 cut(s) 779
BpmI CTGGAG 1 cut(s) 670
Bpu10I CCTNAGC 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 338
BsaAI YACGTR 1 cut(s) 706
BsaBI GATNNNNATC 1 cut(s) 557
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 5 cut(s) 385, 495, 647, 777, 945
BsaXI ACNNNNNCTCC 4 cut(s) 245, 275, 278, 308
Bsc4I CCNNNNNNNGG 1 cut(s) 837
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 3 cut(s) 143, 519, 687
Bse3DI GCAATG 1 cut(s) 462
Bse8I GATNNNNATC 1 cut(s) 557
BseBI CCWGG 1 cut(s) 496
BseDI CCNNGG 5 cut(s) 385, 495, 647, 777, 945
BseGI GGATG 3 cut(s) 114, 342, 982
BseJI GATNNNNATC 1 cut(s) 557
BseLI CCNNNNNNNGG 1 cut(s) 837
BseMI GCAATG 1 cut(s) 462
BseMII CTCAG 3 cut(s) 34, 97, 665
BseNI ACTGG 3 cut(s) 143, 519, 687
BseRI GAGGAG 4 cut(s) 38, 191, 250, 995
Bsh1236I CGCG 1 cut(s) 210
BshFI GGCC 8 cut(s) 142, 189, 374, 461, 482, 536, 888, 944
BshNI GGYRCC 2 cut(s) 643, 964
BsiHKCI CYCGRG 1 cut(s) 243
BsiSI CCGG 2 cut(s) 186, 971
BslFI GGGAC 3 cut(s) 254, 692, 730
BslI CCNNNNNNNGG 1 cut(s) 837
BsmAI GTCTC 2 cut(s) 340, 401
BsmBI CGTCTC 1 cut(s) 401
BsmFI GGGAC 3 cut(s) 254, 692, 730
BsnI GGCC 8 cut(s) 142, 189, 374, 461, 482, 536, 888, 944
BsoBI CYCGRG 1 cut(s) 243
Bsp1286I GDGCHC 2 cut(s) 231, 283
Bsp1407I TGTACA 1 cut(s) 132
Bsp143I GATC 8 cut(s) 42, 75, 165, 444, 552, 579, 651, 846
BspACI CCGC 6 cut(s) 208, 315, 467, 521, 800, 974
BspANI GGCC 8 cut(s) 142, 189, 374, 461, 482, 536, 888, 944
BspCNI CTCAG 3 cut(s) 33, 96, 666
BspFNI CGCG 1 cut(s) 210
BspLI GGNNCC 5 cut(s) 280, 618, 645, 718, 966
BspPI GGATC 6 cut(s) 37, 83, 160, 547, 587, 659
BspT107I GGYRCC 2 cut(s) 643, 964
BsrDI GCAATG 1 cut(s) 462
BsrFI RCCGGY 1 cut(s) 185
BsrGI TGTACA 1 cut(s) 132
BsrI ACTGG 3 cut(s) 143, 519, 687
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 5 cut(s) 385, 495, 647, 777, 945
BssMI GATC 8 cut(s) 42, 75, 165, 444, 552, 579, 651, 846
BssNI GRCGYC 1 cut(s) 30
BssSI CACGAG 2 cut(s) 538, 764
BssT1I CCWWGG 3 cut(s) 385, 647, 945
Bst2BI CACGAG 2 cut(s) 538, 764
Bst2UI CCWGG 1 cut(s) 496
Bst4CI ACNGT 2 cut(s) 94, 859
BstACI GRCGYC 1 cut(s) 30
BstAUI TGTACA 1 cut(s) 132
BstBAI YACGTR 1 cut(s) 706
BstC8I GCNNGC 2 cut(s) 187, 933
BstDEI CTNAG 3 cut(s) 20, 83, 674
BstF5I GGATG 3 cut(s) 114, 342, 982
BstFNI CGCG 1 cut(s) 210
BstHHI GCGC 2 cut(s) 185, 955
BstKTI GATC 8 cut(s) 45, 78, 168, 447, 555, 582, 654, 849
BstMAI GTCTC 2 cut(s) 340, 401
BstMBI GATC 8 cut(s) 42, 75, 165, 444, 552, 579, 651, 846
BstMWI GCNNNNNNNGC 6 cut(s) 12, 21, 191, 467, 941, 950
BstNI CCWGG 1 cut(s) 496
BstNSI RCATGY 2 cut(s) 175, 439
BstSCI CCNGG 1 cut(s) 494
BstUI CGCG 1 cut(s) 210
BstV2I GAAGAC 1 cut(s) 779
BstX2I RGATCY 3 cut(s) 42, 75, 651
BstYI RGATCY 3 cut(s) 42, 75, 651
BsuRI GGCC 8 cut(s) 142, 189, 374, 461, 482, 536, 888, 944
BtsCI GGATG 3 cut(s) 114, 342, 982
BtsIMutI CAGTG 2 cut(s) 671, 855
Cac8I GCNNGC 2 cut(s) 187, 933
CaiI CAGNNNCTG 1 cut(s) 937
CfoI GCGC 2 cut(s) 185, 955
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 2 cut(s) 141, 717
CseI GACGC 2 cut(s) 19, 199
Csp6I GTAC 4 cut(s) 112, 133, 607, 664
CspCI CAANNNNNGTGG 2 cut(s) 526, 561
CviAII CATG 5 cut(s) 163, 172, 238, 364, 436
CviQI GTAC 4 cut(s) 112, 133, 607, 664
DdeI CTNAG 3 cut(s) 20, 83, 674
DpnI GATC 8 cut(s) 44, 77, 167, 446, 554, 581, 653, 848
DpnII GATC 8 cut(s) 42, 75, 165, 444, 552, 579, 651, 846
DrdI GACNNNNNNGTC 1 cut(s) 428
DseDI GACNNNNNNGTC 1 cut(s) 428
EaeI YGGCCR 2 cut(s) 372, 459
EciI GGCGGA 1 cut(s) 989
Eco130I CCWWGG 3 cut(s) 385, 647, 945
Eco24I GRGCYC 2 cut(s) 231, 283
Eco47I GGWCC 1 cut(s) 717
Eco57I CTGAAG 2 cut(s) 959, 1029
Eco88I CYCGRG 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 494
EcoT14I CCWWGG 3 cut(s) 385, 647, 945
EcoT38I GRGCYC 2 cut(s) 231, 283
ErhI CCWWGG 3 cut(s) 385, 647, 945
Esp3I CGTCTC 1 cut(s) 401
FaeI CATG 5 cut(s) 166, 175, 241, 367, 439
FaqI GGGAC 3 cut(s) 254, 692, 730
FatI CATG 5 cut(s) 162, 171, 237, 363, 435
FauI CCCGC 1 cut(s) 793
FauNDI CATATG 1 cut(s) 71
FbaI TGATCA 1 cut(s) 846
FblI GTMKAC 3 cut(s) 102, 252, 378
Fnu4HI GCNGC 1 cut(s) 468
FokI GGATG 3 cut(s) 101, 329, 989
FriOI GRGCYC 2 cut(s) 231, 283
Fsp4HI GCNGC 1 cut(s) 468
GlaI GCGC 2 cut(s) 184, 954
GluI GCNGC 1 cut(s) 468
GsuI CTGGAG 1 cut(s) 670
HaeIII GGCC 8 cut(s) 142, 189, 374, 461, 482, 536, 888, 944
HapII CCGG 2 cut(s) 186, 971
HgaI GACGC 2 cut(s) 19, 199
HhaI GCGC 2 cut(s) 185, 955
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 5 cut(s) 166, 175, 241, 367, 439
Hin6I GCGC 2 cut(s) 183, 953
HinP1I GCGC 2 cut(s) 183, 953
HincII GTYRAC 2 cut(s) 433, 567
HindII GTYRAC 2 cut(s) 433, 567
HinfI GANTC 4 cut(s) 486, 505, 589, 745
HpaII CCGG 2 cut(s) 186, 971
HphI GGTGA 5 cut(s) 82, 151, 226, 574, 820
Hpy166II GTNNAC 5 cut(s) 103, 253, 379, 433, 567
Hpy188I TCNGA 2 cut(s) 278, 939
Hpy188III TCNNGA 4 cut(s) 37, 442, 715, 823
Hpy8I GTNNAC 5 cut(s) 103, 253, 379, 433, 567
Hpy99I CGWCG 3 cut(s) 68, 269, 455
HpyCH4III ACNGT 2 cut(s) 94, 859
HpyCH4IV ACGT 3 cut(s) 63, 410, 705
HpyCH4V TGCA 2 cut(s) 511, 931
HpyF10VI GCNNNNNNNGC 6 cut(s) 12, 21, 191, 467, 941, 950
HpyF3I CTNAG 3 cut(s) 20, 83, 674
HpySE526I ACGT 3 cut(s) 63, 410, 705
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 5 cut(s) 166, 175, 241, 367, 439
HspAI GCGC 2 cut(s) 183, 953
KroI GCCGGC 1 cut(s) 185
KroNI GCCGGC 1 cut(s) 187
Ksp22I TGATCA 1 cut(s) 846
Kzo9I GATC 8 cut(s) 42, 75, 165, 444, 552, 579, 651, 846
LmnI GCTCC 2 cut(s) 278, 622
MaeII ACGT 3 cut(s) 63, 410, 705
MaeIII GTNAC 1 cut(s) 859
MalI GATC 8 cut(s) 44, 77, 167, 446, 554, 581, 653, 848
MboI GATC 8 cut(s) 42, 75, 165, 444, 552, 579, 651, 846
MboII GAAGA 5 cut(s) 52, 70, 139, 784, 970
MflI RGATCY 3 cut(s) 42, 75, 651
MhlI GDGCHC 2 cut(s) 231, 283
MlsI TGGCCA 1 cut(s) 461
MluCI AATT 2 cut(s) 721, 926
MluNI TGGCCA 1 cut(s) 461
MmeI TCCRAC 1 cut(s) 981
Mox20I TGGCCA 1 cut(s) 461
MroNI GCCGGC 1 cut(s) 185
MscI TGGCCA 1 cut(s) 461
MseI TTAA 3 cut(s) 216, 399, 414
MslI CAYNNNNRTG 3 cut(s) 236, 347, 368
Msp20I TGGCCA 1 cut(s) 461
MspI CCGG 2 cut(s) 186, 971
MspR9I CCNGG 1 cut(s) 496
MvaI CCWGG 1 cut(s) 496
MvnI CGCG 1 cut(s) 210
MwoI GCNNNNNNNGC 6 cut(s) 12, 21, 191, 467, 941, 950
NaeI GCCGGC 1 cut(s) 187
NdeI CATATG 1 cut(s) 71
NdeII GATC 8 cut(s) 42, 75, 165, 444, 552, 579, 651, 846
NgoMIV GCCGGC 1 cut(s) 185
NlaIII CATG 5 cut(s) 166, 175, 241, 367, 439
NlaIV GGNNCC 5 cut(s) 280, 618, 645, 718, 966
NmeAIII GCCGAG 1 cut(s) 758
NmuCI GTSAC 1 cut(s) 859
NspI RCATGY 2 cut(s) 175, 439
PciI ACATGT 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 785
PdiI GCCGGC 1 cut(s) 187
PfeI GAWTC 4 cut(s) 486, 505, 589, 745
PkrI GCNGC 1 cut(s) 469
Ppu21I YACGTR 1 cut(s) 706
PscI ACATGT 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 494
PspGI CCWGG 1 cut(s) 494
PspN4I GGNNCC 5 cut(s) 280, 618, 645, 718, 966
PspPI GGNCC 2 cut(s) 141, 717
PstNI CAGNNNCTG 1 cut(s) 937
PsuI RGATCY 3 cut(s) 42, 75, 651
RsaI GTAC 4 cut(s) 113, 134, 608, 665
RsaNI GTAC 4 cut(s) 112, 133, 607, 664
RseI CAYNNNNRTG 3 cut(s) 236, 347, 368
SaqAI TTAA 3 cut(s) 216, 399, 414
SatI GCNGC 1 cut(s) 468
Sau3AI GATC 8 cut(s) 42, 75, 165, 444, 552, 579, 651, 846
Sau96I GGNCC 2 cut(s) 141, 717
ScrFI CCNGG 1 cut(s) 496
SduI GDGCHC 2 cut(s) 231, 283
SinI GGWCC 1 cut(s) 717
SmiMI CAYNNNNRTG 3 cut(s) 236, 347, 368
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 2 cut(s) 721, 926
SsiI CCGC 6 cut(s) 208, 315, 467, 521, 800, 974
StyD4I CCNGG 1 cut(s) 494
StyI CCWWGG 3 cut(s) 385, 647, 945
TaaI ACNGT 2 cut(s) 94, 859
TaiI ACGT 3 cut(s) 66, 413, 708
TaqI TCGA 7 cut(s) 120, 225, 443, 489, 531, 699, 923
TasI AATT 2 cut(s) 721, 926
TatI WGTACW 3 cut(s) 111, 132, 606
TauI GCSGC 1 cut(s) 470
TfiI GAWTC 4 cut(s) 486, 505, 589, 745
Tru1I TTAA 3 cut(s) 216, 399, 414
Tru9I TTAA 3 cut(s) 216, 399, 414
TscAI CASTG 2 cut(s) 678, 862
TseFI GTSAC 1 cut(s) 859
Tsp45I GTSAC 1 cut(s) 859
TspDTI ATGAA 2 cut(s) 331, 806
TspGWI ACGGA 2 cut(s) 253, 439
TspRI CASTG 2 cut(s) 678, 862
VpaK11BI GGWCC 1 cut(s) 717
XceI RCATGY 2 cut(s) 175, 439
XmiI GTMKAC 3 cut(s) 102, 252, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.