Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011525

Physical Location & Seq

Genomic Coordinates Forward (+)

9034406 .. 9035593

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G121600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCTCTTCCTAAATCAAACCCTAGGGTTTCAGCGTCCATGAAGATGAAAAGGGTCTCTGATGCTATGAAGCCTCAGAAAACTGCCATGGCCAAGAGAGGCTCCACTCTGAAGAATAAGGCCGGCCGACTCTCGAAGCTGTGCGATATTGCCGTTTACATGATCGCTGTTGGTGCCGACGGCAAGATCGACGCTTGGCCGGAAAACCAACAAGATTTGAAATCAGTTCTACTCAAGTACAAGAATCTGAAGAGGGGTTTCAAAGATGGAATAGAAAAGGGTCTGTTCTCTGTCGAAAAGGGTTTCTTGGAAATTGTTGATGATCGAGAAAATCGGGATTTGGGTATTCAAGATAATTGCTTATGGGCTAAGTTGGAGTCTTTGAATGAGAGGATCGGAGCTGTGACGATGAAGATGATGAGGGATGACGGTAAGTGCAGTGTCATGGACTTGTACAAGAATATCATGGAACCAGATGCAGCAGATCAACAACAACTATCATCTCTTAATCTTAATTTGAATCTTCATCCAACTGATCTCGTCGTACCCAAACCCAATTTAATTGGTGAGATTAATTTGAATCTTGATCCAGTGGAAGATTATCTGCAACTTTATGATCTTGAATTGCCAGAAGAACCACAAGAGCAGCCGCAGCCGCAACCACCTTCTGTGCCAAGTGTGGAAATTAGTGGTGATGATATGAAGTTGCTATTGAGTGATTGTGAGATTGGTTTGATGGAAGATGATATGCAGTTTTGTGATAATCTCGATGATTATGAGCCAACTGTGGATACTATTTATGATTTTCTCAGTTGGGTATTGGGTGATGAAGATCAAAATGATAATGGGGCAATGGAAGATGATGTGCAACCTCAGAGTACTAATCATATTAGTGATGATGAGCATGATGACATTAGGTTGCTGTTGACTGATTGTGAGATTGGTTTGATGCAAGAAGATTTGCAATTCTGTGACAATGACTTGAGTGATTTTTTGGCGCCTCTTGAAACCATGTTGCTACAAGACCCACAACATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

347

Amino Acids

39.0

Weight (kDa)

4.27

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23771 FvH4_2g31102
prunus_persica	Prupe.6G121300_v2.0.a1 Prupe.6G121400_v2.0.a1 Prupe.6G121600_v2.0.a1 Prupe.6G121700_v2.0.a1 Prupe.6G121700_v2.0.a1
rosa_laevigata	RLG00000012128
rosa_multiflora	Rmu_sc0003735.1_g000004
rosa_roxburghii	Rroxscaffold_7G00176180
rosa_rugosa	Rorug06G0218600 Rorug06G0390600
rosa_samantha	Rh6AG330300 Rh6AG505900 Rh6BG337200 Rh6BG516700 Rh6CG522600 Rh6DG330600 Rh6DG508300
rosa_wichuraiana	Rw6G028680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	173, 997
AccB7I	CCANNNNNTGG	1 cut(s)	1034
AciI	CCGC	2 cut(s)	650, 656
AclWI	GGATC	2 cut(s)	401, 581
AcoI	YGGCCR	3 cut(s)	90, 124, 197
AcuI	CTGAAG	2 cut(s)	131, 269
AcyI	GRCGYC	1 cut(s)	998
AfaI	GTAC	4 cut(s)	239, 455, 546, 880
AfiI	CCNNNNNNNGG	1 cut(s)	1034
AgsI	TTSAA	8 cut(s)	220, 262, 350, 385, 520, 580, 623, 1007
AluBI	AGCT	2 cut(s)	139, 401
AluI	AGCT	2 cut(s)	139, 401
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	2 cut(s)	401, 581
AoxI	GGCC	4 cut(s)	90, 120, 124, 197
ApeKI	GCWGC	3 cut(s)	479, 646, 652
AseI	ATTAAT	1 cut(s)	573
AspA2I	CCTAGG	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	1000
AsuHPI	GGTGA	3 cut(s)	578, 704, 836
AvrII	CCTAGG	1 cut(s)	23
BalI	TGGCCA	1 cut(s)	92
BanI	GGYRCC	2 cut(s)	173, 997
BbvI	GCAGC	3 cut(s)	491, 658, 664
BccI	CCATC	2 cut(s)	260, 730
BceAI	ACGGC	2 cut(s)	137, 196
BciVI	GTATCC	1 cut(s)	784
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	1 cut(s)	24
BfoI	RGCGCY	1 cut(s)	1001
BfuI	GTATCC	1 cut(s)	784
BisI	GCNGC	5 cut(s)	480, 647, 650, 653, 656
BlnI	CCTAGG	1 cut(s)	23
BlsI	GCNGC	5 cut(s)	481, 648, 651, 654, 657
BmcAI	AGTACT	1 cut(s)	880
BmiI	GGNNCC	4 cut(s)	103, 175, 471, 999
BmsI	GCATC	3 cut(s)	52, 466, 939
BpuEI	CTTGAG	2 cut(s)	218, 1003
BsaBI	GATNNNNATC	1 cut(s)	831
BsaHI	GRCGYC	1 cut(s)	998
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	23, 87
Bsc4I	CCNNNNNNNGG	1 cut(s)	1034
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	590
Bse3DI	GCAATG	1 cut(s)	858
Bse8I	GATNNNNATC	1 cut(s)	831
BseDI	CCNNGG	2 cut(s)	23, 87
BseGI	GGATG	2 cut(s)	430, 526
BseJI	GATNNNNATC	1 cut(s)	831
BseLI	CCNNNNNNNGG	1 cut(s)	1034
BseMI	GCAATG	1 cut(s)	858
BseMII	CTCAG	3 cut(s)	89, 823, 887
BseNI	ACTGG	1 cut(s)	590
BseX3I	CGGCCG	1 cut(s)	124
BseXI	GCAGC	3 cut(s)	491, 658, 664
BsgI	GTGCAG	1 cut(s)	457
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	4 cut(s)	92, 122, 126, 199
BshNI	GGYRCC	2 cut(s)	173, 997
BsiEI	CGRYCG	1 cut(s)	127
BsiSI	CCGG	2 cut(s)	123, 200
BslI	CCNNNNNNNGG	1 cut(s)	1034
BsmAI	GTCTC	1 cut(s)	61
BsnI	GGCC	4 cut(s)	92, 122, 126, 199
Bso31I	GGTCTC	1 cut(s)	61
Bsp1407I	TGTACA	1 cut(s)	453
Bsp143I	GATC	9 cut(s)	162, 186, 322, 393, 484, 535, 586, 616, 832
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	2 cut(s)	650, 656
BspANI	GGCC	4 cut(s)	92, 122, 126, 199
BspCNI	CTCAG	3 cut(s)	88, 822, 886
BspLI	GGNNCC	4 cut(s)	103, 175, 471, 999
BspPI	GGATC	2 cut(s)	401, 581
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	2 cut(s)	173, 997
BspTNI	GGTCTC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	858
BsrFI	RCCGGY	1 cut(s)	122
BsrGI	TGTACA	1 cut(s)	453
BsrI	ACTGG	1 cut(s)	590
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	23, 87
BssMI	GATC	9 cut(s)	162, 186, 322, 393, 484, 535, 586, 616, 832
BssNI	GRCGYC	1 cut(s)	998
BssT1I	CCWWGG	2 cut(s)	23, 87
Bst4CI	ACNGT	2 cut(s)	431, 787
Bst6I	CTCTTC	2 cut(s)	12, 245
BstACI	GRCGYC	1 cut(s)	998
BstAUI	TGTACA	1 cut(s)	453
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	4 cut(s)	75, 369, 809, 873
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	2 cut(s)	430, 526
BstH2I	RGCGCY	1 cut(s)	1001
BstHHI	GCGC	1 cut(s)	1000
BstKTI	GATC	9 cut(s)	165, 189, 325, 396, 487, 538, 589, 619, 835
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	9 cut(s)	162, 186, 322, 393, 484, 535, 586, 616, 832
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 652, 655
BstV1I	GCAGC	3 cut(s)	491, 658, 664
BstZI	CGGCCG	1 cut(s)	124
BsuI	GTATCC	1 cut(s)	784
BsuRI	GGCC	4 cut(s)	92, 122, 126, 199
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	2 cut(s)	430, 526
BtsI	GCAGTG	1 cut(s)	445
BtsIMutI	CAGTG	2 cut(s)	445, 597
Cac8I	GCNNGC	1 cut(s)	124
CfoI	GCGC	1 cut(s)	1000
Cfr10I	RCCGGY	1 cut(s)	122
CseI	GACGC	2 cut(s)	24, 200
Csp6I	GTAC	4 cut(s)	238, 454, 545, 879
CviAII	CATG	8 cut(s)	40, 88, 160, 445, 466, 905, 1012, 1034
CviQI	GTAC	4 cut(s)	238, 454, 545, 879
DdeI	CTNAG	4 cut(s)	75, 369, 809, 873
DinI	GGCGCC	1 cut(s)	999
DpnI	GATC	9 cut(s)	164, 188, 324, 395, 486, 537, 588, 618, 834
DpnII	GATC	9 cut(s)	162, 186, 322, 393, 484, 535, 586, 616, 832
EaeI	YGGCCR	3 cut(s)	90, 124, 197
EagI	CGGCCG	1 cut(s)	124
Eam1104I	CTCTTC	2 cut(s)	12, 245
EarI	CTCTTC	2 cut(s)	12, 245
EclXI	CGGCCG	1 cut(s)	124
Eco130I	CCWWGG	2 cut(s)	23, 87
Eco31I	GGTCTC	1 cut(s)	61
Eco52I	CGGCCG	1 cut(s)	124
Eco57I	CTGAAG	2 cut(s)	131, 269
EcoT14I	CCWWGG	2 cut(s)	23, 87
EgeI	GGCGCC	1 cut(s)	999
EheI	GGCGCC	1 cut(s)	999
ErhI	CCWWGG	2 cut(s)	23, 87
FaeI	CATG	8 cut(s)	43, 91, 163, 448, 469, 908, 1015, 1037
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FatI	CATG	8 cut(s)	39, 87, 159, 444, 465, 904, 1011, 1033
Fnu4HI	GCNGC	5 cut(s)	480, 647, 650, 653, 656
FokI	GGATG	2 cut(s)	437, 513
FseI	GGCCGGCC	1 cut(s)	126
Fsp4HI	GCNGC	5 cut(s)	480, 647, 650, 653, 656
FspBI	CTAG	1 cut(s)	24
GlaI	GCGC	1 cut(s)	999
GluI	GCNGC	5 cut(s)	480, 647, 650, 653, 656
HaeII	RGCGCY	1 cut(s)	1001
HaeIII	GGCC	4 cut(s)	92, 122, 126, 199
HapII	CCGG	2 cut(s)	123, 200
HgaI	GACGC	2 cut(s)	24, 200
HhaI	GCGC	1 cut(s)	1000
Hin1I	GRCGYC	1 cut(s)	998
Hin1II	CATG	8 cut(s)	43, 91, 163, 448, 469, 908, 1015, 1037
Hin6I	GCGC	1 cut(s)	998
HinP1I	GCGC	1 cut(s)	998
HincII	GTYRAC	1 cut(s)	927
HindII	GTYRAC	1 cut(s)	927
HinfI	GANTC	5 cut(s)	129, 244, 377, 520, 580
HpaII	CCGG	2 cut(s)	123, 200
HphI	GGTGA	3 cut(s)	578, 704, 836
Hpy166II	GTNNAC	2 cut(s)	157, 927
Hpy188I	TCNGA	6 cut(s)	61, 78, 111, 249, 398, 876
Hpy188III	TCNNGA	8 cut(s)	133, 326, 335, 350, 584, 620, 767, 1004
Hpy8I	GTNNAC	2 cut(s)	157, 927
Hpy99I	CGWCG	3 cut(s)	182, 194, 545
HpyAV	CCTTC	1 cut(s)	675
HpyCH4III	ACNGT	2 cut(s)	431, 787
HpyCH4V	TGCA	7 cut(s)	438, 479, 607, 751, 868, 952, 964
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 652, 655
HpyF3I	CTNAG	4 cut(s)	75, 369, 809, 873
Hsp92I	GRCGYC	1 cut(s)	998
Hsp92II	CATG	8 cut(s)	43, 91, 163, 448, 469, 908, 1015, 1037
HspAI	GCGC	1 cut(s)	998
KasI	GGCGCC	1 cut(s)	997
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
Kzo9I	GATC	9 cut(s)	162, 186, 322, 393, 484, 535, 586, 616, 832
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	2 cut(s)	107, 398
LpnPI	CCDG	5 cut(s)	136, 213, 486, 603, 642
Lsp1109I	GCAGC	3 cut(s)	491, 658, 664
LweI	GCATC	3 cut(s)	52, 466, 939
MaeI	CTAG	1 cut(s)	24
MaeIII	GTNAC	2 cut(s)	403, 971
MalI	GATC	9 cut(s)	164, 188, 324, 395, 486, 537, 588, 618, 834
MboI	GATC	9 cut(s)	162, 186, 322, 393, 484, 535, 586, 616, 832
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	9 cut(s)	312, 355, 514, 556, 561, 574, 623, 684, 965
MluNI	TGGCCA	1 cut(s)	92
Mly113I	GGCGCC	1 cut(s)	998
MlyI	GAGTC	2 cut(s)	123, 386
MmeI	TCCRAC	2 cut(s)	354, 554
MnlI	CCTC	7 cut(s)	84, 92, 246, 384, 414, 882, 1011
Mox20I	TGGCCA	1 cut(s)	92
MroNI	GCCGGC	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	92
MseI	TTAA	4 cut(s)	507, 513, 560, 573
MslI	CAYNNNNRTG	2 cut(s)	44, 891
Msp20I	TGGCCA	1 cut(s)	92
MspI	CCGG	2 cut(s)	123, 200
MwoI	GCNNNNNNNGC	3 cut(s)	173, 652, 655
NaeI	GCCGGC	1 cut(s)	124
NarI	GGCGCC	1 cut(s)	998
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	9 cut(s)	162, 186, 322, 393, 484, 535, 586, 616, 832
NgoMIV	GCCGGC	1 cut(s)	122
NlaIII	CATG	8 cut(s)	43, 91, 163, 448, 469, 908, 1015, 1037
NlaIV	GGNNCC	4 cut(s)	103, 175, 471, 999
NmuCI	GTSAC	2 cut(s)	403, 971
PciSI	GCTCTTC	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	1 cut(s)	186
PdiI	GCCGGC	1 cut(s)	124
PfeI	GAWTC	3 cut(s)	244, 520, 580
PflMI	CCANNNNNTGG	1 cut(s)	1034
PkrI	GCNGC	5 cut(s)	481, 648, 651, 654, 657
PleI	GAGTC	2 cut(s)	123, 385
PluTI	GGCGCC	1 cut(s)	1001
PpsI	GAGTC	2 cut(s)	123, 385
PshBI	ATTAAT	1 cut(s)	573
PspN4I	GGNNCC	4 cut(s)	103, 175, 471, 999
RigI	GGCCGGCC	1 cut(s)	126
RsaI	GTAC	4 cut(s)	239, 455, 546, 880
RsaNI	GTAC	4 cut(s)	238, 454, 545, 879
RseI	CAYNNNNRTG	2 cut(s)	44, 891
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	4 cut(s)	507, 513, 560, 573
SatI	GCNGC	5 cut(s)	480, 647, 650, 653, 656
Sau3AI	GATC	9 cut(s)	162, 186, 322, 393, 484, 535, 586, 616, 832
ScaI	AGTACT	1 cut(s)	880
SchI	GAGTC	2 cut(s)	123, 386
SetI	ASST	5 cut(s)	141, 403, 667, 874, 920
SfaNI	GCATC	3 cut(s)	52, 466, 939
SfoI	GGCGCC	1 cut(s)	999
SmiMI	CAYNNNNRTG	2 cut(s)	44, 891
SmlI	CTYRAG	2 cut(s)	233, 982
SmoI	CTYRAG	2 cut(s)	233, 982
Sse9I	AATT	9 cut(s)	312, 355, 514, 556, 561, 574, 623, 684, 965
SsiI	CCGC	2 cut(s)	650, 656
SspDI	GGCGCC	1 cut(s)	997
SspMI	CTAG	1 cut(s)	24
StyI	CCWWGG	2 cut(s)	23, 87
TaaI	ACNGT	2 cut(s)	431, 787
TaqI	TCGA	5 cut(s)	134, 189, 294, 325, 768
TasI	AATT	9 cut(s)	312, 355, 514, 556, 561, 574, 623, 684, 965
TatI	WGTACW	3 cut(s)	237, 453, 878
TauI	GCSGC	2 cut(s)	652, 658
TfiI	GAWTC	3 cut(s)	244, 520, 580
Tru1I	TTAA	4 cut(s)	507, 513, 560, 573
Tru9I	TTAA	4 cut(s)	507, 513, 560, 573
TscAI	CASTG	2 cut(s)	445, 597
TseFI	GTSAC	2 cut(s)	403, 971
TseI	GCWGC	3 cut(s)	479, 646, 652
Tsp45I	GTSAC	2 cut(s)	403, 971
TspDTI	ATGAA	7 cut(s)	56, 62, 83, 425, 515, 716, 843
TspRI	CASTG	2 cut(s)	445, 597
Van91I	CCANNNNNTGG	1 cut(s)	1034
VspI	ATTAAT	1 cut(s)	573
XmaJI	CCTAGG	1 cut(s)	23
XspI	CTAG	1 cut(s)	24
ZrmI	AGTACT	1 cut(s)	880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.