Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0011525

Physical Location & Seq

Genomic Coordinates Forward (+)

53475061 .. 53475453

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG330600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGTGACGAAATCCCAGACCACCAAATCCGGAGAAAGGATCAAAGAGATCAGAAGTCTGAGATCTTTGGAAAAACCAATTCAGAAGAGAAAGTCCACTCTGAAGAAGAGCGCGAGCCAGCTCGAGATTCTCTGCGGTGCGCAGGTTTGCTGCATTTTGGTGGGGCCAACTGGGAATGTTGAGGTCTGGCCGGAAAACCCAGCCGACGCCGTATCCATTTCACCAAGTACAAACAATGCAAAAAGAAAACAAAGGTTTGTAGGGAGGTCAACCGATCCAAGACCGTGGAGCAGTTTGAAGAAAACAAGGGTTTGGCTATGGGTGATGATGACATTGATCAATCTCTGGAGAACTTTGAGGAAGACAAGGGGTTTGATATTGATCAATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

130

Amino Acids

14.82

Weight (kDa)

11.03

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	28 - 63	2.7e-10	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23771 FvH4_2g31102
prunus_persica	Prupe.6G121300_v2.0.a1 Prupe.6G121400_v2.0.a1 Prupe.6G121600_v2.0.a1 Prupe.6G121700_v2.0.a1 Prupe.6G121700_v2.0.a1
rosa_laevigata	RLG00000012128
rosa_multiflora	Rmu_sc0003735.1_g000004
rosa_roxburghii	Rroxscaffold_7G00176180
rosa_rugosa	Rorug06G0218600 Rorug06G0390600
rosa_samantha	Rh6AG330300 Rh6AG505900 Rh6BG337200 Rh6BG516700 Rh6CG522600 Rh6DG330600 Rh6DG508300
rosa_wichuraiana	Rw6G028680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	141
Acc36I	ACCTGC	1 cut(s)	133
AccII	CGCG	1 cut(s)	113
AccIII	TCCGGA	1 cut(s)	29
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	2 cut(s)	47, 269
AcoI	YGGCCR	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	122
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	36
AgsI	TTSAA	1 cut(s)	298
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
AlwI	GGATC	2 cut(s)	47, 269
Ama87I	CYCGRG	1 cut(s)	122
Aor13HI	TCCGGA	1 cut(s)	29
AoxI	GGCC	2 cut(s)	164, 188
ApeKI	GCWGC	1 cut(s)	150
ArsI	GACNNNNNNTTYG	2 cut(s)	355, 387
AspLEI	GCGC	2 cut(s)	113, 142
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	3 cut(s)	16, 213, 334
AvaI	CYCGRG	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	137
BceAI	ACGGC	1 cut(s)	194
BciVI	GTATCC	1 cut(s)	223
BclI	TGATCA	2 cut(s)	336, 381
BfuAI	ACCTGC	1 cut(s)	133
BfuI	GTATCC	1 cut(s)	223
BglII	AGATCT	1 cut(s)	62
BisI	GCNGC	1 cut(s)	151
BlsI	GCNGC	1 cut(s)	152
BmeT110I	CYCGRG	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	165
BmrI	ACTGGG	1 cut(s)	180
BmuI	ACTGGG	1 cut(s)	180
BpiI	GAAGAC	1 cut(s)	368
BpmI	CTGGAG	1 cut(s)	367
BsaBI	GATNNNNATC	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	284
BsaWI	WCCGGW	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
Bse1I	ACTGG	1 cut(s)	175
Bse8I	GATNNNNATC	1 cut(s)	380
BseAI	TCCGGA	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	284
BseJI	GATNNNNATC	1 cut(s)	380
BseLI	CCNNNNNNNGG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	1 cut(s)	175
BseXI	GCAGC	1 cut(s)	137
BseYI	CCCAGC	1 cut(s)	199
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	2 cut(s)	166, 190
BsiHKCI	CYCGRG	1 cut(s)	122
BsiSI	CCGG	2 cut(s)	30, 191
BslI	CCNNNNNNNGG	1 cut(s)	36
BsnI	GGCC	2 cut(s)	166, 190
BsoBI	CYCGRG	1 cut(s)	122
Bsp13I	TCCGGA	1 cut(s)	29
Bsp143I	GATC	6 cut(s)	39, 48, 62, 274, 336, 381
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	2 cut(s)	166, 190
BspCNI	CTCAG	1 cut(s)	51
BspEI	TCCGGA	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	165
BspMI	ACCTGC	1 cut(s)	133
BspPI	GGATC	2 cut(s)	47, 269
BspQI	GCTCTTC	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	1 cut(s)	284
BssMI	GATC	6 cut(s)	39, 48, 62, 274, 336, 381
BssNI	GRCGYC	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	285
Bst6I	CTCTTC	2 cut(s)	80, 101
BstACI	GRCGYC	1 cut(s)	207
BstC8I	GCNNGC	2 cut(s)	115, 119
BstDEI	CTNAG	1 cut(s)	59
BstDSI	CCRYGG	1 cut(s)	284
BstFNI	CGCG	1 cut(s)	113
BstHHI	GCGC	2 cut(s)	113, 142
BstKTI	GATC	6 cut(s)	42, 51, 65, 277, 339, 384
BstMBI	GATC	6 cut(s)	39, 48, 62, 274, 336, 381
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	137
BstV2I	GAAGAC	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	62
BstXI	CCANNNNNNTGG	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	62
BsuI	GTATCC	1 cut(s)	223
BsuRI	GGCC	2 cut(s)	166, 190
BtgI	CCRYGG	1 cut(s)	284
BveI	ACCTGC	1 cut(s)	133
Cac8I	GCNNGC	2 cut(s)	115, 119
CfoI	GCGC	2 cut(s)	113, 142
Cfr13I	GGNCC	1 cut(s)	164
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	228
CviJI	RGCY	6 cut(s)	117, 121, 166, 190, 203, 316
CviKI_1	RGCY	6 cut(s)	117, 121, 166, 190, 203, 316
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	6 cut(s)	41, 50, 64, 276, 338, 383
DpnII	GATC	6 cut(s)	39, 48, 62, 274, 336, 381
EaeI	YGGCCR	1 cut(s)	188
Eam1104I	CTCTTC	2 cut(s)	80, 101
EarI	CTCTTC	2 cut(s)	80, 101
Eco57I	CTGAAG	1 cut(s)	122
Eco88I	CYCGRG	1 cut(s)	122
FaiI	YATR	1 cut(s)	319
FbaI	TGATCA	2 cut(s)	336, 381
Fnu4HI	GCNGC	1 cut(s)	151
Fsp4HI	GCNGC	1 cut(s)	151
FspI	TGCGCA	1 cut(s)	141
GlaI	GCGC	2 cut(s)	112, 141
GluI	GCNGC	1 cut(s)	151
GsaI	CCCAGC	1 cut(s)	203
GsuI	CTGGAG	1 cut(s)	367
HaeIII	GGCC	2 cut(s)	166, 190
HapII	CCGG	2 cut(s)	30, 191
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	2 cut(s)	113, 142
Hin1I	GRCGYC	1 cut(s)	207
Hin6I	GCGC	2 cut(s)	111, 140
HinP1I	GCGC	2 cut(s)	111, 140
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HinfI	GANTC	1 cut(s)	127
HpaII	CCGG	2 cut(s)	30, 191
HphI	GGTGA	3 cut(s)	16, 213, 334
Hpy166II	GTNNAC	2 cut(s)	96, 270
Hpy188I	TCNGA	5 cut(s)	53, 60, 84, 102, 392
Hpy188III	TCNNGA	3 cut(s)	30, 124, 346
Hpy8I	GTNNAC	2 cut(s)	96, 270
Hpy99I	CGWCG	1 cut(s)	209
HpyCH4III	ACNGT	1 cut(s)	285
HpyCH4V	TGCA	2 cut(s)	153, 239
HpyF3I	CTNAG	1 cut(s)	59
Hsp92I	GRCGYC	1 cut(s)	207
HspAI	GCGC	2 cut(s)	111, 140
Kpn2I	TCCGGA	1 cut(s)	29
Ksp22I	TGATCA	2 cut(s)	336, 381
Kzo9I	GATC	6 cut(s)	39, 48, 62, 274, 336, 381
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	1 cut(s)	288
LpnPI	CCDG	9 cut(s)	29, 43, 128, 131, 156, 172, 204, 213, 331
Lsp1109I	GCAGC	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	4
MalI	GATC	6 cut(s)	41, 50, 64, 276, 338, 383
MboI	GATC	6 cut(s)	39, 48, 62, 274, 336, 381
MboII	GAAGA	5 cut(s)	97, 115, 118, 310, 373
MflI	RGATCY	1 cut(s)	62
MluCI	AATT	2 cut(s)	78, 385
MnlI	CCTC	3 cut(s)	175, 258, 351
MroI	TCCGGA	1 cut(s)	29
MslI	CAYNNNNRTG	1 cut(s)	158
MspI	CCGG	2 cut(s)	30, 191
MvnI	CGCG	1 cut(s)	113
NdeII	GATC	6 cut(s)	39, 48, 62, 274, 336, 381
NlaIV	GGNNCC	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	4
NsbI	TGCGCA	1 cut(s)	141
PaeR7I	CTCGAG	1 cut(s)	122
PciSI	GCTCTTC	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	152
PspFI	CCCAGC	1 cut(s)	199
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	62
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	158
SapI	GCTCTTC	1 cut(s)	101
SatI	GCNGC	1 cut(s)	151
Sau3AI	GATC	6 cut(s)	39, 48, 62, 274, 336, 381
Sau96I	GGNCC	1 cut(s)	164
SetI	ASST	5 cut(s)	123, 147, 186, 257, 269
Sfr274I	CTCGAG	1 cut(s)	122
SlaI	CTCGAG	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	78, 385
SsiI	CCGC	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	285
TaqI	TCGA	1 cut(s)	123
TasI	AATT	2 cut(s)	78, 385
TatI	WGTACW	1 cut(s)	227
TfiI	GAWTC	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	1 cut(s)	150
Tsp45I	GTSAC	1 cut(s)	4
XhoI	CTCGAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.