Rh6BG516700
MADS Family

MADS

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011525
Physical Location & Seq
Reverse (-)
71041361 .. 71042044
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG516700.1

Sequence Viewer

Length: 480 bp
ATGGCTCCCAAGAATCCCAAGAATTCATCTGTGAACAAGCTCCTTGCTGATAATAATGAGTATATAAAATTGGCCATCAAGGTTACAAAATGTCATAAGCTCAAAAACAAGGTCTGGGAGCTTTCAGTCTTGTGCGATGTTTTTGTCTCCTTGATTGTTATTGGACCTGATGGAAAAGTCTCGAAGGAAAACCTAGAAGAGGTGAAATCAATTATAAGGGAGTACTGGCTGAAAAAGCGACTCGACCGCTCCGATCTCTTGGAAGTTGTTCTTGAAGAAATCAAGAAGAGGACTGTGGATATCGACGGCAACTGGGTGCCATCAGATGAGTTAAGGGATATGTGGAATTGCTTGGAGTCCCAGCTAGAAGCTGTGATTGAGAAGACTAGTAGAGTGGTTAGGGATAAGGAGAATACTATTGGTGATATGAGAAAATCGATGCTGCAGATTGATCGGTCATTCTTAGATTCATCTGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

159

Amino Acids

18.39

Weight (kDa)

7.64

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 34 - 60 4e-07 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 215
AccB1I GGYRCC 1 cut(s) 316
AccBSI CCGCTC 1 cut(s) 249
AciI CCGC 1 cut(s) 247
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 1 cut(s) 22
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 1 cut(s) 275
AhlI ACTAGT 1 cut(s) 386
AluBI AGCT 5 cut(s) 40, 100, 121, 364, 371
AluI AGCT 5 cut(s) 40, 100, 121, 364, 371
Alw26I GTCTC 2 cut(s) 151, 184
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 442
ApoI RAATTY 1 cut(s) 22
ArsI GACNNNNNNTTYG 2 cut(s) 96, 128
Asp700I GAANNNNTTC 1 cut(s) 267
AspS9I GGNCC 1 cut(s) 164
AsuHPI GGTGA 2 cut(s) 214, 434
AvaII GGWCC 1 cut(s) 164
BalI TGGCCA 1 cut(s) 74
BanI GGYRCC 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 389
BbvI GCAGC 1 cut(s) 429
BccI CCATC 3 cut(s) 83, 164, 328
BceAI ACGGC 1 cut(s) 322
BcgI CGANNNNNNTGC 2 cut(s) 434, 468
BcoDI GTCTC 2 cut(s) 151, 184
BcuI ACTAGT 1 cut(s) 386
BfaI CTAG 3 cut(s) 194, 365, 387
BfmI CTRYAG 1 cut(s) 443
BisI GCNGC 1 cut(s) 443
BlsI GCNGC 1 cut(s) 444
BmcAI AGTACT 1 cut(s) 224
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 2 cut(s) 6, 318
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 1 cut(s) 429
BmuI ACTGGG 1 cut(s) 322
BpiI GAAGAC 1 cut(s) 389
Bsa29I ATCGAT 1 cut(s) 437
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse1I ACTGG 2 cut(s) 230, 317
BseCI ATCGAT 1 cut(s) 437
BseLI CCNNNNNNNGG 1 cut(s) 199
BseNI ACTGG 2 cut(s) 230, 317
BseXI GCAGC 1 cut(s) 429
BseYI CCCAGC 1 cut(s) 360
Bsh1285I CGRYCG 1 cut(s) 247
BshFI GGCC 1 cut(s) 74
BshNI GGYRCC 1 cut(s) 316
BshVI ATCGAT 1 cut(s) 437
BsiEI CGRYCG 1 cut(s) 247
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 2 cut(s) 151, 184
BsmFI GGGAC 1 cut(s) 343
BsnI GGCC 1 cut(s) 74
Bsp143I GATC 2 cut(s) 253, 451
BspACI CCGC 1 cut(s) 247
BspANI GGCC 1 cut(s) 74
BspDI ATCGAT 1 cut(s) 437
BspLI GGNNCC 2 cut(s) 6, 318
BspMAI CTGCAG 1 cut(s) 447
BspT107I GGYRCC 1 cut(s) 316
BsrBI CCGCTC 1 cut(s) 249
BsrI ACTGG 2 cut(s) 230, 317
BssMI GATC 2 cut(s) 253, 451
Bst4CI ACNGT 1 cut(s) 295
Bst6I CTCTTC 2 cut(s) 192, 281
BstDEI CTNAG 1 cut(s) 463
BstENI CCTNNNNNAGG 1 cut(s) 197
BstKTI GATC 2 cut(s) 256, 454
BstMAI GTCTC 2 cut(s) 151, 184
BstMBI GATC 2 cut(s) 253, 451
BstMCI CGRYCG 1 cut(s) 247
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstSFI CTRYAG 1 cut(s) 443
BstV1I GCAGC 1 cut(s) 429
BstV2I GAAGAC 1 cut(s) 389
Bsu15I ATCGAT 1 cut(s) 437
BsuRI GGCC 1 cut(s) 74
BsuTUI ATCGAT 1 cut(s) 437
BtgZI GCGATG 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 164
ClaI ATCGAT 1 cut(s) 437
Csp6I GTAC 1 cut(s) 223
CviJI RGCY 8 cut(s) 5, 40, 74, 100, 121, 229, 364, 371
CviKI_1 RGCY 8 cut(s) 5, 40, 74, 100, 121, 229, 364, 371
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 1 cut(s) 463
DpnI GATC 2 cut(s) 255, 453
DpnII GATC 2 cut(s) 253, 451
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 2 cut(s) 192, 281
EarI CTCTTC 2 cut(s) 192, 281
Eco32I GATATC 1 cut(s) 301
Eco47I GGWCC 1 cut(s) 164
EcoNI CCTNNNNNAGG 1 cut(s) 197
EcoRI GAATTC 1 cut(s) 22
EcoRV GATATC 1 cut(s) 301
FaiI YATR 7 cut(s) 63, 65, 96, 215, 341, 428, 478
FalI AAGNNNNNCTT 2 cut(s) 255, 287
FaqI GGGAC 1 cut(s) 343
Fnu4HI GCNGC 1 cut(s) 443
Fsp4HI GCNGC 1 cut(s) 443
FspBI CTAG 3 cut(s) 194, 365, 387
GluI GCNGC 1 cut(s) 443
GsaI CCCAGC 1 cut(s) 364
HaeIII GGCC 1 cut(s) 74
HinfI GANTC 4 cut(s) 13, 240, 356, 467
HphI GGTGA 2 cut(s) 214, 434
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 2 cut(s) 253, 325
Hpy188III TCNNGA 3 cut(s) 181, 272, 283
Hpy8I GTNNAC 1 cut(s) 34
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4V TGCA 1 cut(s) 445
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpyF3I CTNAG 1 cut(s) 463
Kzo9I GATC 2 cut(s) 253, 451
LmnI GCTCC 4 cut(s) 10, 45, 118, 254
LpnPI CCDG 5 cut(s) 100, 180, 211, 298, 374
Lsp1109I GCAGC 1 cut(s) 429
LweI GCATC 1 cut(s) 429
MaeI CTAG 3 cut(s) 194, 365, 387
MaeIII GTNAC 1 cut(s) 82
MalI GATC 2 cut(s) 255, 453
MbiI CCGCTC 1 cut(s) 249
MboI GATC 2 cut(s) 253, 451
MboII GAAGA 4 cut(s) 209, 287, 298, 394
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 4 cut(s) 22, 68, 210, 346
MluNI TGGCCA 1 cut(s) 74
MlyI GAGTC 2 cut(s) 234, 365
MnlI CCTC 2 cut(s) 193, 282
Mox20I TGGCCA 1 cut(s) 74
MroXI GAANNNNTTC 1 cut(s) 267
MscI TGGCCA 1 cut(s) 74
MseI TTAA 1 cut(s) 332
Msp20I TGGCCA 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 235
NdeII GATC 2 cut(s) 253, 451
NlaIV GGNNCC 2 cut(s) 6, 318
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 2 cut(s) 13, 467
PkrI GCNGC 1 cut(s) 444
PleI GAGTC 2 cut(s) 234, 364
PpsI GAGTC 2 cut(s) 234, 364
PsiI TTATAA 1 cut(s) 215
PspFI CCCAGC 1 cut(s) 360
PspN4I GGNNCC 2 cut(s) 6, 318
PspPI GGNCC 1 cut(s) 164
PstI CTGCAG 1 cut(s) 447
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 1 cut(s) 443
Sau3AI GATC 2 cut(s) 253, 451
Sau96I GGNCC 1 cut(s) 164
ScaI AGTACT 1 cut(s) 224
SchI GAGTC 2 cut(s) 234, 365
SfaNI GCATC 1 cut(s) 429
SfcI CTRYAG 1 cut(s) 443
SinI GGWCC 1 cut(s) 164
SpeI ACTAGT 1 cut(s) 386
Sse9I AATT 4 cut(s) 22, 68, 210, 346
SsiI CCGC 1 cut(s) 247
SspMI CTAG 3 cut(s) 194, 365, 387
TaaI ACNGT 1 cut(s) 295
TaqI TCGA 4 cut(s) 182, 243, 303, 437
TaqII GACCGA 1 cut(s) 444
TasI AATT 4 cut(s) 22, 68, 210, 346
TatI WGTACW 1 cut(s) 222
TfiI GAWTC 2 cut(s) 13, 467
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TseI GCWGC 1 cut(s) 442
TspDTI ATGAA 2 cut(s) 15, 459
VpaK11BI GGWCC 1 cut(s) 164
XagI CCTNNNNNAGG 1 cut(s) 197
XapI RAATTY 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 3 cut(s) 194, 365, 387
ZrmI AGTACT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.