Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0011525

Physical Location & Seq

Genomic Coordinates Forward (+)

9058353 .. 9059930

Gene Structure 1578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G121700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGCTCTTCCTAAATCAAACCCTAGGGTTTCAGCGTCCATGAAGATGAAAAGGGTCTCTGATGCTATGAAGCCTCAGAAAACTGCCATGGCCAAGAGAGGCTCCACTCTGAAGAATAAGGCCGGCCGACTCTCAAAGCTGTGCGATATTGCCGTTTACATGATCGCTGTTGGTGCCGACGGCAAGATCAACGCTTGGCCGGAAAACCAACAAGATTTGAAATCAGTTCTACTCAAGTACAAGAATCTGAAGAGGGGTTTCAAAAATGGAATTGAAAAGGGTCTGTTCTCCGTCGAAAAGGGTTTCTTGGACATTGTTGATGATCGAGAAAATCGGGATTTGGGTATTCAAGATAATTGCTTGGGGGCCAAGTTGGAGTCTTTGAATGAGAGGATCGGAGCTGTGACGATGAAGATGATGATGATGAGGGATGACGATAAGTGCAGTTTCATTGACTTGTACAAGAATATCATGGAACCAGATGCAGCAGATCAACAACAACTATCATCTCTTAATCTTAATTTGAATCTTCATCCAACTGATCTCGTCGTACCCACACCCAAACCCAGTTTAATTGGTGAGATTAATTTGAATCTTGATCCAGGTGATCTCGTCATACCCACAGCCAATTCAATTAGTCAATTTCAGCAAGATTATCTTTCATCAATTCATGAGCCAACTGTGGATGCAAATGATTATCTCAGTTTGTTAATGGGTAATGATGATCATAATGATGTTGGTCTAATGGAAGATTATCTGCAACTTTATGATCTTGAATTGCCAGAAGAACCACAAGAGCAGCCGCAGCCGCAACCACCTTCTGTGCCAAGTGTGGAAATTAGTGATGATGATATGAAGTTGCAATTGAGTGATTGTGAGATTGGTTTGATGGAAGATGATATGCAGTTTTGTGATAATCTCGATGATTATGAGCCAACTGTGGATACTATTTATGATTTTCTCAGTTGGGTATTGGGTGATGAAGATCAAAATGATAATGGGGCAATGGAAGATGATGTGCAACCTCAGAGTACTAATCATATTAGTGATGATGAGCATGATGACATTAGGTTGCTGTTGACTGATTGTGAGATTGGTTTGATGCAAGAAGATTTGCAATTCTGTGACAATGACTTGAGTGATTTTTTGGCGCCTCTTGAAACCATGTTGCTACAAGACCCACAACATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

398

Amino Acids

44.6

Weight (kDa)

4.2

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011525)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g23771 FvH4_2g31102
prunus_persica	Prupe.6G121300_v2.0.a1 Prupe.6G121400_v2.0.a1 Prupe.6G121600_v2.0.a1 Prupe.6G121700_v2.0.a1 Prupe.6G121700_v2.0.a1
rosa_laevigata	RLG00000012128
rosa_multiflora	Rmu_sc0003735.1_g000004
rosa_roxburghii	Rroxscaffold_7G00176180
rosa_rugosa	Rorug06G0218600 Rorug06G0390600
rosa_samantha	Rh6AG330300 Rh6AG505900 Rh6BG337200 Rh6BG516700 Rh6CG522600 Rh6DG330600 Rh6DG508300
rosa_wichuraiana	Rw6G028680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	173, 1150
AccB7I	CCANNNNNTGG	1 cut(s)	1187
AciI	CCGC	2 cut(s)	803, 809
AclWI	GGATC	2 cut(s)	401, 593
AcoI	YGGCCR	3 cut(s)	90, 124, 197
AcuI	CTGAAG	2 cut(s)	131, 269
AcyI	GRCGYC	1 cut(s)	1151
AfaI	GTAC	4 cut(s)	239, 461, 552, 1033
AfiI	CCNNNNNNNGG	1 cut(s)	1187
AjnI	CCWGG	1 cut(s)	601
AluBI	AGCT	2 cut(s)	139, 401
AluI	AGCT	2 cut(s)	139, 401
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	2 cut(s)	401, 593
AoxI	GGCC	5 cut(s)	90, 120, 124, 197, 366
ApeKI	GCWGC	3 cut(s)	485, 799, 805
AseI	ATTAAT	1 cut(s)	585
AspA2I	CCTAGG	1 cut(s)	23
AspLEI	GCGC	1 cut(s)	1153
AspS9I	GGNCC	1 cut(s)	366
AsuHPI	GGTGA	3 cut(s)	590, 617, 989
AvrII	CCTAGG	1 cut(s)	23
BalI	TGGCCA	1 cut(s)	92
BanI	GGYRCC	2 cut(s)	173, 1150
BbvI	GCAGC	3 cut(s)	497, 811, 817
BccI	CCATC	1 cut(s)	883
BceAI	ACGGC	2 cut(s)	137, 196
BciT130I	CCWGG	1 cut(s)	603
BciVI	GTATCC	1 cut(s)	937
BclI	TGATCA	1 cut(s)	724
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	1 cut(s)	24
BfoI	RGCGCY	1 cut(s)	1154
BfuI	GTATCC	1 cut(s)	937
BisI	GCNGC	5 cut(s)	486, 800, 803, 806, 809
BlnI	CCTAGG	1 cut(s)	23
BlsI	GCNGC	5 cut(s)	487, 801, 804, 807, 810
BmcAI	AGTACT	1 cut(s)	1033
Bme1390I	CCNGG	1 cut(s)	603
BmgT120I	GGNCC	1 cut(s)	366
BmiI	GGNNCC	5 cut(s)	103, 175, 367, 477, 1152
BmrFI	CCNGG	1 cut(s)	603
BmrI	ACTGGG	1 cut(s)	561
BmsI	GCATC	4 cut(s)	52, 472, 676, 1092
BmuI	ACTGGG	1 cut(s)	561
BpuEI	CTTGAG	2 cut(s)	218, 1156
BsaBI	GATNNNNATC	1 cut(s)	984
BsaHI	GRCGYC	1 cut(s)	1151
BsaI	GGTCTC	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	23, 87
Bsc4I	CCNNNNNNNGG	1 cut(s)	1187
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	567
Bse3DI	GCAATG	1 cut(s)	1011
Bse8I	GATNNNNATC	1 cut(s)	984
BseBI	CCWGG	1 cut(s)	603
BseDI	CCNNGG	2 cut(s)	23, 87
BseGI	GGATG	3 cut(s)	436, 532, 691
BseJI	GATNNNNATC	1 cut(s)	984
BseLI	CCNNNNNNNGG	1 cut(s)	1187
BseMI	GCAATG	1 cut(s)	1011
BseMII	CTCAG	4 cut(s)	89, 715, 976, 1040
BseNI	ACTGG	1 cut(s)	567
BseX3I	CGGCCG	1 cut(s)	124
BseXI	GCAGC	3 cut(s)	497, 811, 817
BsgI	GTGCAG	1 cut(s)	463
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	5 cut(s)	92, 122, 126, 199, 368
BshNI	GGYRCC	2 cut(s)	173, 1150
BsiEI	CGRYCG	1 cut(s)	127
BsiSI	CCGG	2 cut(s)	123, 200
BslI	CCNNNNNNNGG	1 cut(s)	1187
BsmAI	GTCTC	1 cut(s)	61
BsnI	GGCC	5 cut(s)	92, 122, 126, 199, 368
Bso31I	GGTCTC	1 cut(s)	61
Bsp1407I	TGTACA	1 cut(s)	459
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	2 cut(s)	803, 809
BspANI	GGCC	5 cut(s)	92, 122, 126, 199, 368
BspCNI	CTCAG	4 cut(s)	88, 714, 975, 1039
BspHI	TCATGA	1 cut(s)	670
BspLI	GGNNCC	5 cut(s)	103, 175, 367, 477, 1152
BspPI	GGATC	2 cut(s)	401, 593
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	2 cut(s)	173, 1150
BspTNI	GGTCTC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	1011
BsrFI	RCCGGY	1 cut(s)	122
BsrGI	TGTACA	1 cut(s)	459
BsrI	ACTGG	1 cut(s)	567
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	23, 87
BssNI	GRCGYC	1 cut(s)	1151
BssT1I	CCWWGG	2 cut(s)	23, 87
Bst2UI	CCWGG	1 cut(s)	603
Bst4CI	ACNGT	2 cut(s)	682, 940
Bst6I	CTCTTC	2 cut(s)	12, 245
BstACI	GRCGYC	1 cut(s)	1151
BstAUI	TGTACA	1 cut(s)	459
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	4 cut(s)	75, 701, 962, 1026
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	3 cut(s)	436, 532, 691
BstH2I	RGCGCY	1 cut(s)	1154
BstHHI	GCGC	1 cut(s)	1153
BstMAI	GTCTC	1 cut(s)	61
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 805, 808
BstNI	CCWGG	1 cut(s)	603
BstSCI	CCNGG	1 cut(s)	601
BstV1I	GCAGC	3 cut(s)	497, 811, 817
BstZI	CGGCCG	1 cut(s)	124
BsuI	GTATCC	1 cut(s)	937
BsuRI	GGCC	5 cut(s)	92, 122, 126, 199, 368
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	3 cut(s)	436, 532, 691
Cac8I	GCNNGC	1 cut(s)	124
CciI	TCATGA	1 cut(s)	670
CfoI	GCGC	1 cut(s)	1153
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	366
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	4 cut(s)	238, 460, 551, 1032
CviAII	CATG	8 cut(s)	40, 88, 160, 472, 671, 1058, 1165, 1187
CviQI	GTAC	4 cut(s)	238, 460, 551, 1032
DdeI	CTNAG	4 cut(s)	75, 701, 962, 1026
DinI	GGCGCC	1 cut(s)	1152
EaeI	YGGCCR	3 cut(s)	90, 124, 197
EagI	CGGCCG	1 cut(s)	124
Eam1104I	CTCTTC	2 cut(s)	12, 245
EarI	CTCTTC	2 cut(s)	12, 245
EclXI	CGGCCG	1 cut(s)	124
Eco130I	CCWWGG	2 cut(s)	23, 87
Eco31I	GGTCTC	1 cut(s)	61
Eco52I	CGGCCG	1 cut(s)	124
Eco57I	CTGAAG	2 cut(s)	131, 269
EcoRII	CCWGG	1 cut(s)	601
EcoT14I	CCWWGG	2 cut(s)	23, 87
EgeI	GGCGCC	1 cut(s)	1152
EheI	GGCGCC	1 cut(s)	1152
ErhI	CCWWGG	2 cut(s)	23, 87
FaeI	CATG	8 cut(s)	43, 91, 163, 475, 674, 1061, 1168, 1190
FalI	AAGNNNNNCTT	4 cut(s)	290, 322, 642, 674
FatI	CATG	8 cut(s)	39, 87, 159, 471, 670, 1057, 1164, 1186
FbaI	TGATCA	1 cut(s)	724
Fnu4HI	GCNGC	5 cut(s)	486, 800, 803, 806, 809
FokI	GGATG	3 cut(s)	443, 519, 698
FseI	GGCCGGCC	1 cut(s)	126
Fsp4HI	GCNGC	5 cut(s)	486, 800, 803, 806, 809
FspBI	CTAG	1 cut(s)	24
GlaI	GCGC	1 cut(s)	1152
GluI	GCNGC	5 cut(s)	486, 800, 803, 806, 809
HaeII	RGCGCY	1 cut(s)	1154
HaeIII	GGCC	5 cut(s)	92, 122, 126, 199, 368
HapII	CCGG	2 cut(s)	123, 200
HgaI	GACGC	1 cut(s)	24
HhaI	GCGC	1 cut(s)	1153
Hin1I	GRCGYC	1 cut(s)	1151
Hin1II	CATG	8 cut(s)	43, 91, 163, 475, 674, 1061, 1168, 1190
Hin6I	GCGC	1 cut(s)	1151
HinP1I	GCGC	1 cut(s)	1151
HincII	GTYRAC	1 cut(s)	1080
HindII	GTYRAC	1 cut(s)	1080
HinfI	GANTC	5 cut(s)	129, 244, 377, 526, 592
HpaII	CCGG	2 cut(s)	123, 200
HphI	GGTGA	3 cut(s)	590, 617, 989
Hpy166II	GTNNAC	2 cut(s)	157, 1080
Hpy188I	TCNGA	6 cut(s)	61, 78, 111, 249, 398, 1029
Hpy188III	TCNNGA	8 cut(s)	326, 335, 350, 596, 671, 773, 920, 1157
Hpy8I	GTNNAC	2 cut(s)	157, 1080
Hpy99I	CGWCG	3 cut(s)	182, 296, 551
HpyAV	CCTTC	1 cut(s)	828
HpyCH4III	ACNGT	2 cut(s)	682, 940
HpyCH4V	TGCA	9 cut(s)	444, 485, 689, 760, 862, 904, 1021, 1105, 1117
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 805, 808
HpyF3I	CTNAG	4 cut(s)	75, 701, 962, 1026
Hsp92I	GRCGYC	1 cut(s)	1151
Hsp92II	CATG	8 cut(s)	43, 91, 163, 475, 674, 1061, 1168, 1190
HspAI	GCGC	1 cut(s)	1151
KasI	GGCGCC	1 cut(s)	1150
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	724
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	2 cut(s)	107, 398
LpnPI	CCDG	7 cut(s)	136, 213, 492, 580, 588, 615, 795
Lsp1109I	GCAGC	3 cut(s)	497, 811, 817
LweI	GCATC	4 cut(s)	52, 472, 676, 1092
MaeI	CTAG	1 cut(s)	24
MaeIII	GTNAC	2 cut(s)	403, 1124
MfeI	CAATTG	1 cut(s)	863
MlsI	TGGCCA	1 cut(s)	92
MluNI	TGGCCA	1 cut(s)	92
Mly113I	GGCGCC	1 cut(s)	1151
MlyI	GAGTC	2 cut(s)	123, 386
MmeI	TCCRAC	2 cut(s)	354, 560
MnlI	CCTC	7 cut(s)	84, 92, 246, 384, 420, 1035, 1164
Mox20I	TGGCCA	1 cut(s)	92
MroNI	GCCGGC	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	92
MseI	TTAA	5 cut(s)	513, 519, 572, 585, 710
MslI	CAYNNNNRTG	3 cut(s)	44, 732, 1044
Msp20I	TGGCCA	1 cut(s)	92
MspI	CCGG	2 cut(s)	123, 200
MspR9I	CCNGG	1 cut(s)	603
MunI	CAATTG	1 cut(s)	863
MvaI	CCWGG	1 cut(s)	603
MwoI	GCNNNNNNNGC	3 cut(s)	173, 805, 808
NaeI	GCCGGC	1 cut(s)	124
NarI	GGCGCC	1 cut(s)	1151
NcoI	CCATGG	1 cut(s)	87
NgoMIV	GCCGGC	1 cut(s)	122
NlaIII	CATG	8 cut(s)	43, 91, 163, 475, 674, 1061, 1168, 1190
NlaIV	GGNNCC	5 cut(s)	103, 175, 367, 477, 1152
NmuCI	GTSAC	2 cut(s)	403, 1124
PagI	TCATGA	1 cut(s)	670
PciSI	GCTCTTC	1 cut(s)	12
PdiI	GCCGGC	1 cut(s)	124
PfeI	GAWTC	3 cut(s)	244, 526, 592
PflMI	CCANNNNNTGG	1 cut(s)	1187
PkrI	GCNGC	5 cut(s)	487, 801, 804, 807, 810
PleI	GAGTC	2 cut(s)	123, 385
PluTI	GGCGCC	1 cut(s)	1154
PpsI	GAGTC	2 cut(s)	123, 385
PshBI	ATTAAT	1 cut(s)	585
Psp6I	CCWGG	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	601
PspN4I	GGNNCC	5 cut(s)	103, 175, 367, 477, 1152
PspPI	GGNCC	1 cut(s)	366
RigI	GGCCGGCC	1 cut(s)	126
RsaI	GTAC	4 cut(s)	239, 461, 552, 1033
RsaNI	GTAC	4 cut(s)	238, 460, 551, 1032
RseI	CAYNNNNRTG	3 cut(s)	44, 732, 1044
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	5 cut(s)	513, 519, 572, 585, 710
SatI	GCNGC	5 cut(s)	486, 800, 803, 806, 809
Sau96I	GGNCC	1 cut(s)	366
ScaI	AGTACT	1 cut(s)	1033
SchI	GAGTC	2 cut(s)	123, 386
ScrFI	CCNGG	1 cut(s)	603
SetI	ASST	6 cut(s)	141, 403, 607, 820, 1027, 1073
SfaNI	GCATC	4 cut(s)	52, 472, 676, 1092
SfoI	GGCGCC	1 cut(s)	1152
SmiMI	CAYNNNNRTG	3 cut(s)	44, 732, 1044
SmlI	CTYRAG	2 cut(s)	233, 1135
SmoI	CTYRAG	2 cut(s)	233, 1135
SsiI	CCGC	2 cut(s)	803, 809
SspDI	GGCGCC	1 cut(s)	1150
SspMI	CTAG	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	601
StyI	CCWWGG	2 cut(s)	23, 87
TaaI	ACNGT	2 cut(s)	682, 940
TaqI	TCGA	3 cut(s)	294, 325, 921
TatI	WGTACW	3 cut(s)	237, 459, 1031
TauI	GCSGC	2 cut(s)	805, 811
TfiI	GAWTC	3 cut(s)	244, 526, 592
Tru1I	TTAA	5 cut(s)	513, 519, 572, 585, 710
Tru9I	TTAA	5 cut(s)	513, 519, 572, 585, 710
TseFI	GTSAC	2 cut(s)	403, 1124
TseI	GCWGC	3 cut(s)	485, 799, 805
Tsp45I	GTSAC	2 cut(s)	403, 1124
TspGWI	ACGGA	1 cut(s)	280
Van91I	CCANNNNNTGG	1 cut(s)	1187
VspI	ATTAAT	1 cut(s)	585
XmaJI	CCTAGG	1 cut(s)	23
XspI	CTAG	1 cut(s)	24
ZrmI	AGTACT	1 cut(s)	1033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.