Prupe.6G166100_v2.0.a1

Bifunctional 3-dehydroquinate dehydratase shikimate dehydrogenase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
16790745 .. 16795106
4362 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G166100.3

Sequence Viewer

Length: 1614 bp
ATGCTTAGTTCTTCTTGCTCTGATGCCCTGAAAGTTGGAGGTGAGGGGATGATGAGGAGGAATTCGACTCTAGTTTGTGTTCCGATAATGGCCGAGTCAGTGGGTGAGATGGTGACTGATATGGGCAAGGCAAAGGGCCTTGGTGCTGACGTTGTGGAGATAAGATTAGATTATTTGAAAACATTCAATCACAATGAAGATCTCAAGCGTCTAGTTAAAGAGTGCCCTTTGCCCACACTTTTCAGTTATAGGCCCAAATGGGAAGGTGGTCAGTACGATGGGGATGAACAAAATCGACTCGATGCACTTCGATTAGCAATGGATCTCGGAGCTGATTACGTTGACGTTGAGCTTCAGGTTGCTCGTGAATTTATTAGCTCTATAGAAGGAAAGAAGCCTGAAAGGTTAAAAGTGATTGTTTCTTCTTACAACTTTGAAGAGACCCCATCTGTGGAGTCTATTGGCAATCTTGTAGCAGCAATGCAAGCCACTGGAGCTGACATAGTGAAGATTGCAACCACTTGCTTGGATATAACTGATGTGGCACGCACTTTTCAAATCGCCGTTCATTCTCAAGTAAGCAGAGTTCCATTGATAGGACTTGGACTGGGTGAAAGGGGTTTGATTTCACGGATACTTTCTGCAAAATTTGGCGGTTATCTTACTTATGGAATGCTTGAGCCAGGGACAGTTTCAGCTCCTAGTCAACCTACAATCAAGGATCTAATACATCTATACAATTTCAGACAGATTGGGCCGTACACAAAAGTGTTTGGCGTAATTAGCAAGCCTGTCAGCCACAGCAAATCACCAAAATTGTACAATGAAGTGTTCAAGTCAGTAGGTTTCGATGGAGTTTATGCACATTTGTTGGTAGATGACATTCAGAAATTTTTCCAGACATACTCATCCATGGATTTTGCTGGATTCAGCGTAGGCATCCCTCACAAGGAAGCTGCACTTATGTGCTGTGATGAGGTTGATCCAGTTGCCAAGTCAATAGGGGCTATAAATTGCATTATAAGGAGACCGGCTGACGGGAAGTTATTCGGATTCAATACCGACTACGTTGGTGCTATTTCTGCCATTGAGGAAGGACTGAAAGGTTCCCATAATAATAGTGGCAAGAACACAACAAGTGGTTCAGCTTTAGCTGGTAGGCTGTTTGTTGTGATTGGGGCAGGTGGTGCTAGCAAGGCACTTGCTTATGGTGCAAAGCAGAGGGGAGCAAGGCTTGTAATCGCCAATCGCACCTATGATCGAGCTAGAGAACTTGCAGACATAGTGGGTGGAGATGCTTTGTCTCTTGATGATCTACCTAACATCCGCCCAGAGGATGGTATGATTCTTGCAAACACAACATCAATTGGAATGCAGCCTAAAGTTGATGACACGCCCATTTCCAAGCATGCTCTGAGATCATATTCATTGGTTTTTGATGCCATTTACACCCCCAGAGTGACCAGACTCTTGAGGGAAGCAGCAGAGTGTGGTGTCACAGTTGTTAGTGGGTTGGAGATGTTCATTGGACAGGCATATGAACAATTTGAAAAGTTCACTGGATTGCCAGCTCCAAAGGAACTGTTTAGAAAAGTTATGGAAAATCATTCTTGA

Protein Analysis

538

Amino Acids

58.31

Weight (kDa)

6.2

Isoelectric Point (pI)

28.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1022
AarI CACCTGC 1 cut(s) 1172
Acc36I ACCTGC 1 cut(s) 1172
AccB7I CCANNNNNTGG 1 cut(s) 1337
AciI CCGC 2 cut(s) 654, 1327
AclWI GGATC 3 cut(s) 330, 729, 977
AcoI YGGCCR 1 cut(s) 90
AcsI RAATTY 4 cut(s) 61, 368, 647, 890
AcuI CTGAAG 1 cut(s) 338
AfaI GTAC 3 cut(s) 275, 761, 821
AfiI CCNNNNNNNGG 6 cut(s) 451, 596, 949, 1037, 1333, 1337
AgsI TTSAA 7 cut(s) 178, 187, 437, 557, 835, 1057, 1550
AjnI CCWGG 1 cut(s) 682
AleI CACNNNNGTG 2 cut(s) 767, 964
Alw26I GTCTC 3 cut(s) 434, 1021, 1308
AlwI GGATC 3 cut(s) 330, 729, 977
AoxI GGCC 4 cut(s) 90, 136, 251, 755
ApeKI GCWGC 4 cut(s) 476, 956, 1375, 1481
ApoI RAATTY 4 cut(s) 61, 368, 647, 890
Asp700I GAANNNNTTC 3 cut(s) 182, 893, 1046
AspS9I GGNCC 3 cut(s) 136, 252, 755
AsuHPI GGTGA 5 cut(s) 53, 116, 124, 623, 801
AsuNHI GCTAGC 1 cut(s) 1190
BaeGI GKGCMC 1 cut(s) 227
BauI CACGAG 1 cut(s) 363
BbvI GCAGC 4 cut(s) 488, 943, 1387, 1493
BccI CCATC 5 cut(s) 103, 272, 454, 845, 1331
BceAI ACGGC 2 cut(s) 548, 742
BciT130I CCWGG 1 cut(s) 684
BciVI GTATCC 1 cut(s) 627
BcoDI GTCTC 3 cut(s) 434, 1021, 1308
BfaI CTAG 5 cut(s) 71, 212, 702, 1191, 1266
BfmI CTRYAG 1 cut(s) 381
BfuAI ACCTGC 1 cut(s) 1172
BfuI GTATCC 1 cut(s) 627
BglII AGATCT 1 cut(s) 199
BisI GCNGC 4 cut(s) 477, 957, 1376, 1482
BlsI GCNGC 4 cut(s) 478, 958, 1377, 1483
Bme1390I CCNGG 1 cut(s) 684
BmgT120I GGNCC 3 cut(s) 136, 252, 755
BmiI GGNNCC 1 cut(s) 1108
BmrFI CCNGG 1 cut(s) 684
BmrI ACTGGG 1 cut(s) 617
BmsI GCATC 5 cut(s) 13, 292, 948, 1285, 1429
BmtI GCTAGC 1 cut(s) 1194
BmuI ACTGGG 1 cut(s) 617
BpmI CTGGAG 1 cut(s) 513
BpuEI CTTGAG 4 cut(s) 188, 558, 698, 1492
BsaI GGTCTC 2 cut(s) 434, 1021
BsaJI CCNNGG 3 cut(s) 139, 683, 912
Bsc4I CCNNNNNNNGG 6 cut(s) 451, 596, 949, 1037, 1333, 1337
Bse118I RCCGGY 1 cut(s) 1030
Bse1I ACTGG 4 cut(s) 496, 612, 986, 1564
Bse3DI GCAATG 2 cut(s) 324, 486
BseBI CCWGG 1 cut(s) 684
BseDI CCNNGG 3 cut(s) 139, 683, 912
BseGI GGATG 6 cut(s) 54, 289, 908, 939, 1323, 1342
BseLI CCNNNNNNNGG 6 cut(s) 451, 596, 949, 1037, 1333, 1337
BseMI GCAATG 2 cut(s) 324, 486
BseMII CTCAG 1 cut(s) 1406
BseNI ACTGG 4 cut(s) 496, 612, 986, 1564
BseRI GAGGAG 1 cut(s) 70
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 4 cut(s) 488, 943, 1387, 1493
BsgI GTGCAG 1 cut(s) 942
BshFI GGCC 4 cut(s) 92, 138, 253, 757
BsiSI CCGG 1 cut(s) 1031
BslFI GGGAC 1 cut(s) 700
BslI CCNNNNNNNGG 6 cut(s) 451, 596, 949, 1037, 1333, 1337
BsmAI GTCTC 3 cut(s) 434, 1021, 1308
BsmFI GGGAC 1 cut(s) 700
BsmI GAATGC 2 cut(s) 678, 1377
BsnI GGCC 4 cut(s) 92, 138, 253, 757
Bso31I GGTCTC 2 cut(s) 434, 1021
Bsp1286I GDGCHC 1 cut(s) 227
Bsp1407I TGTACA 1 cut(s) 819
Bsp143I GATC 7 cut(s) 199, 322, 721, 982, 1258, 1312, 1418
Bsp19I CCATGG 1 cut(s) 912
BspACI CCGC 2 cut(s) 654, 1327
BspANI GGCC 4 cut(s) 92, 138, 253, 757
BspCNI CTCAG 1 cut(s) 1407
BspLI GGNNCC 1 cut(s) 1108
BspMI ACCTGC 1 cut(s) 1172
BspOI GCTAGC 1 cut(s) 1194
BspPI GGATC 3 cut(s) 330, 729, 977
BspTNI GGTCTC 2 cut(s) 434, 1021
BsrDI GCAATG 2 cut(s) 324, 486
BsrFI RCCGGY 1 cut(s) 1030
BsrGI TGTACA 1 cut(s) 819
BsrI ACTGG 4 cut(s) 496, 612, 986, 1564
BssAI RCCGGY 1 cut(s) 1030
BssECI CCNNGG 3 cut(s) 139, 683, 912
BssMI GATC 7 cut(s) 199, 322, 721, 982, 1258, 1312, 1418
BssSI CACGAG 1 cut(s) 363
BssT1I CCWWGG 2 cut(s) 139, 912
Bst2BI CACGAG 1 cut(s) 363
Bst2UI CCWGG 1 cut(s) 684
Bst4CI ACNGT 3 cut(s) 691, 1501, 1584
Bst6I CTCTTC 1 cut(s) 432
BstAPI GCANNNNNTGC 1 cut(s) 1187
BstAUI TGTACA 1 cut(s) 819
BstC8I GCNNGC 6 cut(s) 486, 547, 788, 1192, 1410, 1569
BstDEI CTNAG 2 cut(s) 5, 1415
BstDSI CCRYGG 1 cut(s) 912
BstF5I GGATG 6 cut(s) 54, 289, 908, 939, 1323, 1342
BstKTI GATC 7 cut(s) 202, 325, 724, 985, 1261, 1315, 1421
BstMAI GTCTC 3 cut(s) 434, 1021, 1308
BstMBI GATC 7 cut(s) 199, 322, 721, 982, 1258, 1312, 1418
BstMWI GCNNNNNNNGC 7 cut(s) 485, 494, 783, 1082, 1187, 1196, 1211
BstNI CCWGG 1 cut(s) 684
BstNSI RCATGY 1 cut(s) 1412
BstSCI CCNGG 1 cut(s) 682
BstSFI CTRYAG 1 cut(s) 381
BstSLI GKGCMC 1 cut(s) 227
BstV1I GCAGC 4 cut(s) 488, 943, 1387, 1493
BstX2I RGATCY 3 cut(s) 199, 322, 721
BstXI CCANNNNNNTGG 1 cut(s) 526
BstYI RGATCY 3 cut(s) 199, 322, 721
BsuI GTATCC 1 cut(s) 627
BsuRI GGCC 4 cut(s) 92, 138, 253, 757
BtgI CCRYGG 1 cut(s) 912
BtsCI GGATG 6 cut(s) 54, 289, 908, 939, 1323, 1342
BtsIMutI CAGTG 3 cut(s) 105, 489, 1557
BveI ACCTGC 1 cut(s) 1172
Cac8I GCNNGC 6 cut(s) 486, 547, 788, 1192, 1410, 1569
Cfr10I RCCGGY 1 cut(s) 1030
Cfr13I GGNCC 3 cut(s) 136, 252, 755
CseI GACGC 1 cut(s) 197
Csp6I GTAC 3 cut(s) 274, 760, 820
CviAII CATG 2 cut(s) 913, 1409
CviQI GTAC 3 cut(s) 274, 760, 820
DdeI CTNAG 2 cut(s) 5, 1415
DpnI GATC 7 cut(s) 201, 324, 723, 984, 1260, 1314, 1420
DpnII GATC 7 cut(s) 199, 322, 721, 982, 1258, 1312, 1418
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
EciI GGCGGA 1 cut(s) 1316
Eco130I CCWWGG 2 cut(s) 139, 912
Eco31I GGTCTC 2 cut(s) 434, 1021
Eco57I CTGAAG 1 cut(s) 338
EcoO109I RGGNCCY 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 682
EcoT14I CCWWGG 2 cut(s) 139, 912
ErhI CCWWGG 2 cut(s) 139, 912
FaeI CATG 2 cut(s) 916, 1412
FalI AAGNNNNNCTT 2 cut(s) 945, 977
FaqI GGGAC 1 cut(s) 700
FatI CATG 2 cut(s) 912, 1408
FauNDI CATATG 1 cut(s) 1537
Fnu4HI GCNGC 4 cut(s) 477, 957, 1376, 1482
FokI GGATG 6 cut(s) 61, 296, 895, 926, 1310, 1349
Fsp4HI GCNGC 4 cut(s) 477, 957, 1376, 1482
FspBI CTAG 5 cut(s) 71, 212, 702, 1191, 1266
GluI GCNGC 4 cut(s) 477, 957, 1376, 1482
GsuI CTGGAG 1 cut(s) 513
HaeIII GGCC 4 cut(s) 92, 138, 253, 757
HapII CCGG 1 cut(s) 1031
HgaI GACGC 1 cut(s) 197
Hin1II CATG 2 cut(s) 916, 1412
HincII GTYRAC 2 cut(s) 343, 707
HindII GTYRAC 2 cut(s) 343, 707
HinfI GANTC 8 cut(s) 67, 95, 297, 455, 927, 1053, 1345, 1467
HpaII CCGG 1 cut(s) 1031
HphI GGTGA 5 cut(s) 53, 116, 124, 623, 801
Hpy166II GTNNAC 4 cut(s) 343, 707, 762, 1557
Hpy188I TCNGA 7 cut(s) 22, 84, 329, 746, 888, 1052, 1416
Hpy188III TCNNGA 5 cut(s) 365, 898, 1307, 1471, 1611
Hpy8I GTNNAC 4 cut(s) 343, 707, 762, 1557
HpyAV CCTTC 3 cut(s) 257, 380, 1088
HpyCH4III ACNGT 3 cut(s) 691, 1501, 1584
HpyCH4IV ACGT 4 cut(s) 150, 339, 345, 1068
HpyF10VI GCNNNNNNNGC 7 cut(s) 485, 494, 783, 1082, 1187, 1196, 1211
HpyF3I CTNAG 2 cut(s) 5, 1415
HpySE526I ACGT 4 cut(s) 150, 339, 345, 1068
Hsp92II CATG 2 cut(s) 916, 1412
Kzo9I GATC 7 cut(s) 199, 322, 721, 982, 1258, 1312, 1418
LmnI GCTCC 5 cut(s) 329, 494, 703, 1226, 1576
Lsp1109I GCAGC 4 cut(s) 488, 943, 1387, 1493
LweI GCATC 5 cut(s) 13, 292, 948, 1285, 1429
MaeI CTAG 5 cut(s) 71, 212, 702, 1191, 1266
MaeII ACGT 4 cut(s) 150, 339, 345, 1068
MaeIII GTNAC 3 cut(s) 112, 1459, 1495
MalI GATC 7 cut(s) 201, 324, 723, 984, 1260, 1314, 1420
MboI GATC 7 cut(s) 199, 322, 721, 982, 1258, 1312, 1418
MboII GAAGA 5 cut(s) 3, 209, 414, 449, 520
MfeI CAATTG 1 cut(s) 1365
MflI RGATCY 3 cut(s) 199, 322, 721
MhlI GDGCHC 1 cut(s) 227
MlyI GAGTC 5 cut(s) 61, 104, 291, 464, 1461
MmeI TCCRAC 2 cut(s) 16, 1494
MroXI GAANNNNTTC 3 cut(s) 182, 893, 1046
MseI TTAA 2 cut(s) 216, 407
MslI CAYNNNNRTG 2 cut(s) 767, 964
MspI CCGG 1 cut(s) 1031
MspR9I CCNGG 1 cut(s) 684
MunI CAATTG 1 cut(s) 1365
Mva1269I GAATGC 2 cut(s) 678, 1377
MvaI CCWGG 1 cut(s) 684
MwoI GCNNNNNNNGC 7 cut(s) 485, 494, 783, 1082, 1187, 1196, 1211
NcoI CCATGG 1 cut(s) 912
NdeI CATATG 1 cut(s) 1537
NdeII GATC 7 cut(s) 199, 322, 721, 982, 1258, 1312, 1418
NheI GCTAGC 1 cut(s) 1190
NlaIII CATG 2 cut(s) 916, 1412
NlaIV GGNNCC 1 cut(s) 1108
NmeAIII GCCGAG 1 cut(s) 118
NmuCI GTSAC 3 cut(s) 112, 1459, 1495
NspI RCATGY 1 cut(s) 1412
OliI CACNNNNGTG 2 cut(s) 767, 964
PaeI GCATGC 1 cut(s) 1412
PaqCI CACCTGC 1 cut(s) 1172
PctI GAATGC 2 cut(s) 678, 1377
PdmI GAANNNNTTC 3 cut(s) 182, 893, 1046
PfeI GAWTC 3 cut(s) 927, 1053, 1345
PflMI CCANNNNNTGG 1 cut(s) 1337
PkrI GCNGC 4 cut(s) 478, 958, 1377, 1483
PleI GAGTC 5 cut(s) 61, 103, 291, 463, 1461
PpsI GAGTC 5 cut(s) 61, 103, 291, 463, 1461
PsiI TTATAA 1 cut(s) 1022
Psp6I CCWGG 1 cut(s) 682
PspGI CCWGG 1 cut(s) 682
PspN4I GGNNCC 1 cut(s) 1108
PspPI GGNCC 3 cut(s) 136, 252, 755
PsrI GAACNNNNNNTAC 2 cut(s) 570, 602
PsuI RGATCY 3 cut(s) 199, 322, 721
RsaI GTAC 3 cut(s) 275, 761, 821
RsaNI GTAC 3 cut(s) 274, 760, 820
RseI CAYNNNNRTG 2 cut(s) 767, 964
SaqAI TTAA 2 cut(s) 216, 407
SatI GCNGC 4 cut(s) 477, 957, 1376, 1482
Sau3AI GATC 7 cut(s) 199, 322, 721, 982, 1258, 1312, 1418
Sau96I GGNCC 3 cut(s) 136, 252, 755
SchI GAGTC 5 cut(s) 61, 104, 291, 464, 1461
ScrFI CCNGG 1 cut(s) 684
SduI GDGCHC 1 cut(s) 227
SfaNI GCATC 5 cut(s) 13, 292, 948, 1285, 1429
SfcI CTRYAG 1 cut(s) 381
SmiMI CAYNNNNRTG 2 cut(s) 767, 964
SmlI CTYRAG 4 cut(s) 203, 573, 677, 1471
SmoI CTYRAG 4 cut(s) 203, 573, 677, 1471
SphI GCATGC 1 cut(s) 1412
SsiI CCGC 2 cut(s) 654, 1327
SspMI CTAG 5 cut(s) 71, 212, 702, 1191, 1266
StyD4I CCNGG 1 cut(s) 682
StyI CCWWGG 2 cut(s) 139, 912
TaaI ACNGT 3 cut(s) 691, 1501, 1584
TaiI ACGT 4 cut(s) 153, 342, 348, 1071
TaqI TCGA 6 cut(s) 65, 295, 300, 310, 849, 1261
TatI WGTACW 1 cut(s) 819
TfiI GAWTC 3 cut(s) 927, 1053, 1345
Tru1I TTAA 2 cut(s) 216, 407
Tru9I TTAA 2 cut(s) 216, 407
TscAI CASTG 3 cut(s) 105, 496, 1564
TseFI GTSAC 3 cut(s) 112, 1459, 1495
TseI GCWGC 4 cut(s) 476, 956, 1375, 1481
Tsp45I GTSAC 3 cut(s) 112, 1459, 1495
TspDTI ATGAA 7 cut(s) 210, 300, 557, 840, 1416, 1513, 1554
TspGWI ACGGA 1 cut(s) 646
TspRI CASTG 3 cut(s) 105, 496, 1564
Van91I CCANNNNNTGG 1 cut(s) 1337
XapI RAATTY 4 cut(s) 61, 368, 647, 890
XceI RCATGY 1 cut(s) 1412
XcmI CCANNNNNNNNNTGG 1 cut(s) 1118
XmnI GAANNNNTTC 3 cut(s) 182, 893, 1046
XspI CTAG 5 cut(s) 71, 212, 702, 1191, 1266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.