Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002493

Physical Location & Seq

Genomic Coordinates Reverse (-)

28979697 .. 28980305

Gene Structure 609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00352100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGACTCACCAAACCTTGCGGTTGCTTCAGCTTCAGCGCAAGTGGGAGGCGGAGGAATGAGGAAGAGTTCAACTCTAATTTGTGCTCCGATCATGGCCGAATCGGTGGCCAAGATGGTGGTGGAGATTGGCAGGGCAAAGGCCTCCGGTGCTGACCTTGTGGAGATTAGACTGGACCATTTGAAGGTCTTCAATTGTAATCAAGATGTCAAGACCCTAATTGATCAATCCCCTTGCCCACTCTTTTCACTTATAGACCAAAGTGGGAAGGTGGTCGGTATGATGGCGATGAAAAGAGCGATCGGATGTGCTTCGACTAGCTATGGGTTGGGGGCAGATTACATTGATGTTGAGCTTCGGGTTGCTCAAGAATTTATTGACTCCATACAAGACAAGAAGCCCGAAAAGCTAAAAGTTATTGTTTCTTCTCACAACTATCAAGAAACTCCATCCGTCGAGGCTCTTGGCAATCTTGTTGCAAAAATACAAGTCACCGGAGCCGATATAGTGAAGATTGCGACCTTTGCGTTGGATATCACCGATGTCGCTCGCATTTTTTCAAATAACCGTGCATTCTCAAGTCCCAATAATTGGACTTGTAATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004764 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0019632 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

DHquinase_I Shikimate_DH Shikimate_dh_N

Protein Analysis

202

Amino Acids

21.52

Weight (kDa)

6.12

Isoelectric Point (pI)

30.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHquinase_I	PF01487	28 - 189	5.4e-31	Type I 3-dehydroquinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06350
fragaria_vesca	FvH4_1g23213 FvH4_1g23213 FvH4_1g23213 FvH4_1g23232 FvH4_1g23232 FvH4_1g23232
malus_domestica	MD00G1130500.v1.1 MD15G1335600.v1.1
prunus_persica	Prupe.6G166100_v2.0.a1 Prupe.6G166100_v2.0.a1 Prupe.6G166100_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1
pyrus_communis	pycom01g04680 pycom01g04700 pycom15g28990
rosa_chinensis	RchiOBHm_Chr2g0117991 RchiOBHm_Chr2g0118061
rosa_laevigata	RLG00000018384 RLG00000018389 RLG00000018397
rosa_multiflora	Rmu_sc0000948.1_g000018 Rmu_sc0000948.1_g000032
rosa_roxburghii	Rroxscaffold_2G00125870 Rroxscaffold_2G00126000 Rroxscaffold_2G00126080 Rroxscaffold_5G00352100
rosa_rugosa	Rorug02G0215100 Rorug02G0215200 Rorug02G0215500.1 Rorug02G0217000
rosa_samantha	Rh2BG283700 Rh2DG280600 Rh2DG298000 Rh2DG298700
rosa_wichuraiana	Rw2G021480 Rw2G021530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	591
AciI	CCGC	2 cut(s)	20, 51
AcoI	YGGCCR	2 cut(s)	96, 108
AcsI	RAATTY	1 cut(s)	371
AcuI	CTGAAG	2 cut(s)	12, 18
AfiI	CCNNNNNNNGG	2 cut(s)	184, 591
AgsI	TTSAA	4 cut(s)	72, 184, 193, 561
AluBI	AGCT	4 cut(s)	32, 321, 355, 409
AluI	AGCT	4 cut(s)	32, 321, 355, 409
Alw21I	GWGCWC	1 cut(s)	88
AoxI	GGCC	3 cut(s)	96, 108, 141
ApoI	RAATTY	1 cut(s)	371
Asp700I	GAANNNNTTC	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	2 cut(s)	484, 529
AvaII	GGWCC	1 cut(s)	175
BalI	TGGCCA	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	88
BccI	CCATC	3 cut(s)	109, 277, 457
BclI	TGATCA	1 cut(s)	223
BfaI	CTAG	1 cut(s)	318
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	499
BpiI	GAAGAC	1 cut(s)	181
BplI	GAGNNNNNCTC	2 cut(s)	58, 90
BpuEI	CTTGAG	2 cut(s)	351, 562
BsaWI	WCCGGW	2 cut(s)	146, 494
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 591
Bse1I	ACTGG	1 cut(s)	177
BseGI	GGATG	2 cut(s)	311, 449
BseLI	CCNNNNNNNGG	2 cut(s)	184, 591
BseNI	ACTGG	1 cut(s)	177
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	3 cut(s)	98, 110, 143
BsiEI	CGRYCG	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	88
BsiSI	CCGG	2 cut(s)	147, 495
BslFI	GGGAC	1 cut(s)	567
BslI	CCNNNNNNNGG	2 cut(s)	184, 591
BsmFI	GGGAC	1 cut(s)	567
BsmI	GAATGC	1 cut(s)	572
BsnI	GGCC	3 cut(s)	98, 110, 143
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	3 cut(s)	90, 223, 300
BspACI	CCGC	2 cut(s)	20, 51
BspANI	GGCC	3 cut(s)	98, 110, 143
BspLI	GGNNCC	1 cut(s)	499
BsrI	ACTGG	1 cut(s)	177
BssMI	GATC	3 cut(s)	90, 223, 300
Bst4CI	ACNGT	1 cut(s)	569
Bst6I	CTCTTC	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	550
BstF5I	GGATG	2 cut(s)	311, 449
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	3 cut(s)	93, 226, 303
BstMBI	GATC	3 cut(s)	90, 223, 300
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 406, 524
BstV2I	GAAGAC	1 cut(s)	181
BstXI	CCANNNNNNTGG	1 cut(s)	118
BsuRI	GGCC	3 cut(s)	98, 110, 143
BtgZI	GCGATG	1 cut(s)	302
BtsCI	GGATG	2 cut(s)	311, 449
Cac8I	GCNNGC	1 cut(s)	550
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	1 cut(s)	175
CviAII	CATG	1 cut(s)	94
DpnI	GATC	3 cut(s)	92, 225, 302
DpnII	GATC	3 cut(s)	90, 223, 300
EaeI	YGGCCR	2 cut(s)	96, 108
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
EciI	GGCGGA	1 cut(s)	66
Eco147I	AGGCCT	1 cut(s)	143
Eco32I	GATATC	1 cut(s)	535
Eco47I	GGWCC	1 cut(s)	175
Eco57I	CTGAAG	2 cut(s)	12, 18
EcoRV	GATATC	1 cut(s)	535
FaeI	CATG	1 cut(s)	97
FaiI	YATR	6 cut(s)	95, 254, 281, 324, 386, 506
FaqI	GGGAC	1 cut(s)	567
FatI	CATG	1 cut(s)	93
FbaI	TGATCA	1 cut(s)	223
FokI	GGATG	2 cut(s)	318, 436
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	1 cut(s)	39
HaeIII	GGCC	3 cut(s)	98, 110, 143
HapII	CCGG	2 cut(s)	147, 495
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	1 cut(s)	97
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HinfI	GANTC	3 cut(s)	5, 101, 380
HpaII	CCGG	2 cut(s)	147, 495
HphI	GGTGA	2 cut(s)	484, 529
Hpy188I	TCNGA	2 cut(s)	90, 305
Hpy188III	TCNNGA	4 cut(s)	203, 211, 368, 440
Hpy99I	CGWCG	1 cut(s)	458
HpyAV	CCTTC	2 cut(s)	178, 262
HpyCH4III	ACNGT	1 cut(s)	569
HpyCH4V	TGCA	2 cut(s)	479, 572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 406, 524
Hsp92II	CATG	1 cut(s)	97
HspAI	GCGC	1 cut(s)	38
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	3 cut(s)	90, 223, 300
LmnI	GCTCC	2 cut(s)	91, 497
LpnPI	CCDG	4 cut(s)	118, 158, 160, 508
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	3 cut(s)	92, 225, 302
MboI	GATC	3 cut(s)	90, 223, 300
MboII	GAAGA	4 cut(s)	76, 181, 417, 523
MfeI	CAATTG	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	88
MlsI	TGGCCA	1 cut(s)	110
MluCI	AATT	5 cut(s)	78, 193, 219, 371, 589
MluNI	TGGCCA	1 cut(s)	110
MlyI	GAGTC	1 cut(s)	374
MmeI	TCCRAC	1 cut(s)	510
MnlI	CCTC	5 cut(s)	41, 47, 54, 154, 451
Mox20I	TGGCCA	1 cut(s)	110
MroXI	GAANNNNTTC	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	110
Msp20I	TGGCCA	1 cut(s)	110
MspI	CCGG	2 cut(s)	147, 495
MunI	CAATTG	1 cut(s)	193
Mva1269I	GAATGC	1 cut(s)	572
MwoI	GCNNNNNNNGC	3 cut(s)	149, 406, 524
NdeII	GATC	3 cut(s)	90, 223, 300
NlaIII	CATG	1 cut(s)	97
NlaIV	GGNNCC	1 cut(s)	499
NmuCI	GTSAC	1 cut(s)	490
PceI	AGGCCT	1 cut(s)	143
PctI	GAATGC	1 cut(s)	572
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	101
PflMI	CCANNNNNTGG	1 cut(s)	591
Ple19I	CGATCG	1 cut(s)	303
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
PspN4I	GGNNCC	1 cut(s)	499
PspPI	GGNCC	1 cut(s)	175
PvuI	CGATCG	1 cut(s)	303
Sau3AI	GATC	3 cut(s)	90, 223, 300
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	1 cut(s)	374
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	9 cut(s)	18, 34, 159, 189, 273, 323, 357, 411, 524
SinI	GGWCC	1 cut(s)	175
SmlI	CTYRAG	2 cut(s)	366, 577
SmoI	CTYRAG	2 cut(s)	366, 577
Sse9I	AATT	5 cut(s)	78, 193, 219, 371, 589
SseBI	AGGCCT	1 cut(s)	143
SsiI	CCGC	2 cut(s)	20, 51
SspMI	CTAG	1 cut(s)	318
StuI	AGGCCT	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	569
TaqI	TCGA	2 cut(s)	314, 456
TasI	AATT	5 cut(s)	78, 193, 219, 371, 589
TfiI	GAWTC	1 cut(s)	101
TseFI	GTSAC	1 cut(s)	490
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	1 cut(s)	305
TspGWI	ACGGA	1 cut(s)	442
Van91I	CCANNNNNTGG	1 cut(s)	591
VpaK11BI	GGWCC	1 cut(s)	175
XapI	RAATTY	1 cut(s)	371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.