Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002493

Physical Location & Seq

Genomic Coordinates Reverse (-)

20564866 .. 20566388

Gene Structure 1523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0215100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCAAAGCAAAGGGAGTTGAATTGGACACAACCTGTTGGACCAAGAATATTTGGTATTATTGAGAAAAACAGAGAACTGAGTTATAATTGCTATGCTAAATCTTCCATTGGAGGCCATTTCGAGGTCACTCATCTTCATAGAAGAAAATTTTATGTTAATATGGAGGATAGAACTTGCTCATGTAGAAAGTGGGACCTTTGTGGTATTCCATGTTCTCATGCAATGACTTGTCTTGGTTGGATGGATGCGAGTCCATATGATTTTGTACATAACCATTACAAGAGGGAGGCTTATGACCGAGCCTATGGTTACTTCATTTCCCCAATGTCCAGTCAAGACTTGTGGCCTAAAACTGGTGGCATGCCGATTCTTCCACCACTCTATCACAAACAACTAGGAAGGCCCAAAAAGAGAAGAATTTTAGAACCAAATGAGATTCCCAAAGGTGCAAAAAAGCTACAGAGATATCATGCCCCATCTAAGTGCACACTTTGTAAAAATGAAGGTCATAATAAGAGGACATGTCCTCAGAGAGGACAAGCACTAGAACCTCCTCCTCATGTTCCAGCGAGCGAAAATATGTACAAGGCAAGTGGAACAGCAAGAGGAAGGGCTAGAGGAACCAGAAGTTTAAAAGCCTCTTTGTTTAGTTTAATGGAAGACATGGTGTTCAATATGTTAGAGTTGGGGGGACTAGAGGAGGAAGAGGCCAATTTGTTGCTCCAACAAGAGAAAGAGGACAGTTTGAAAGCTTTATTGGAAGGTCACAATCTACAAGTTTCGGTACTAGAGGAGGAGGACAAACATTTGCAAGTGCCGGAAGAGGAAGAAGCCAATTTAACAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004764 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0019632 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

DHquinase_I Shikimate_DH Shikimate_dh_N

Protein Analysis

283

Amino Acids

32.46

Weight (kDa)

8.49

Isoelectric Point (pI)

72.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIM	PF04434	53 - 76	9.5e-07	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06350
fragaria_vesca	FvH4_1g23213 FvH4_1g23213 FvH4_1g23213 FvH4_1g23232 FvH4_1g23232 FvH4_1g23232
malus_domestica	MD00G1130500.v1.1 MD15G1335600.v1.1
prunus_persica	Prupe.6G166100_v2.0.a1 Prupe.6G166100_v2.0.a1 Prupe.6G166100_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1
pyrus_communis	pycom01g04680 pycom01g04700 pycom15g28990
rosa_chinensis	RchiOBHm_Chr2g0117991 RchiOBHm_Chr2g0118061
rosa_laevigata	RLG00000018384 RLG00000018389 RLG00000018397
rosa_multiflora	Rmu_sc0000948.1_g000018 Rmu_sc0000948.1_g000032
rosa_roxburghii	Rroxscaffold_2G00125870 Rroxscaffold_2G00126000 Rroxscaffold_2G00126080 Rroxscaffold_5G00352100
rosa_rugosa	Rorug02G0215100 Rorug02G0215200 Rorug02G0215500.1 Rorug02G0217000
rosa_samantha	Rh2BG283700 Rh2DG280600 Rh2DG298000 Rh2DG298700
rosa_wichuraiana	Rw2G021480 Rw2G021530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	87
AcsI	RAATTY	2 cut(s)	149, 420
AfaI	GTAC	3 cut(s)	270, 587, 789
AfiI	CCNNNNNNNGG	3 cut(s)	124, 356, 536
AflIII	ACRYGT	1 cut(s)	524
AgsI	TTSAA	3 cut(s)	22, 676, 751
AjuI	GAANNNNNNNTTGG	2 cut(s)	743, 775
AluBI	AGCT	2 cut(s)	460, 755
AluI	AGCT	2 cut(s)	460, 755
Alw21I	GWGCWC	1 cut(s)	491
Alw44I	GTGCAC	1 cut(s)	487
AoxI	GGCC	4 cut(s)	115, 347, 404, 711
ApaLI	GTGCAC	1 cut(s)	487
ApoI	RAATTY	2 cut(s)	149, 420
AspS9I	GGNCC	3 cut(s)	41, 196, 405
AvaII	GGWCC	2 cut(s)	41, 196
BaeGI	GKGCMC	1 cut(s)	491
BbsI	GAAGAC	1 cut(s)	669
Bbv12I	GWGCWC	1 cut(s)	491
BccI	CCATC	2 cut(s)	238, 487
BfaI	CTAG	5 cut(s)	398, 548, 618, 698, 791
BfmI	CTRYAG	1 cut(s)	461
Bme18I	GGWCC	2 cut(s)	41, 196
BmgT120I	GGNCC	3 cut(s)	41, 196, 405
BmiI	GGNNCC	2 cut(s)	197, 625
BmsI	GCATC	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	669
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 356, 536
Bse1I	ACTGG	2 cut(s)	333, 361
Bse3DI	GCAATG	1 cut(s)	231
BseGI	GGATG	2 cut(s)	249, 253
BseLI	CCNNNNNNNGG	3 cut(s)	124, 356, 536
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	2 cut(s)	71, 545
BseNI	ACTGG	2 cut(s)	333, 361
BseRI	GAGGAG	5 cut(s)	546, 549, 716, 809, 812
BseSI	GKGCMC	1 cut(s)	491
BshFI	GGCC	4 cut(s)	117, 349, 406, 713
BsiHKAI	GWGCWC	1 cut(s)	491
BsiSI	CCGG	1 cut(s)	821
BslFI	GGGAC	2 cut(s)	209, 708
BslI	CCNNNNNNNGG	3 cut(s)	124, 356, 536
BsmFI	GGGAC	2 cut(s)	209, 708
BsnI	GGCC	4 cut(s)	117, 349, 406, 713
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp1407I	TGTACA	2 cut(s)	268, 585
BspANI	GGCC	4 cut(s)	117, 349, 406, 713
BspCNI	CTCAG	2 cut(s)	72, 544
BspLI	GGNNCC	2 cut(s)	197, 625
BsrDI	GCAATG	1 cut(s)	231
BsrGI	TGTACA	2 cut(s)	268, 585
BsrI	ACTGG	2 cut(s)	333, 361
Bst4CI	ACNGT	1 cut(s)	746
Bst6I	CTCTTC	2 cut(s)	702, 819
BstAUI	TGTACA	2 cut(s)	268, 585
BstC8I	GCNNGC	2 cut(s)	365, 574
BstDEI	CTNAG	3 cut(s)	80, 483, 531
BstENI	CCTNNNNNAGG	1 cut(s)	534
BstF5I	GGATG	2 cut(s)	249, 253
BstNSI	RCATGY	2 cut(s)	367, 528
BstSFI	CTRYAG	1 cut(s)	461
BstSLI	GKGCMC	1 cut(s)	491
BstV2I	GAAGAC	1 cut(s)	669
BsuRI	GGCC	4 cut(s)	117, 349, 406, 713
BtsCI	GGATG	2 cut(s)	249, 253
Cac8I	GCNNGC	2 cut(s)	365, 574
Cfr13I	GGNCC	3 cut(s)	41, 196, 405
Csp6I	GTAC	3 cut(s)	269, 586, 788
CspCI	CAANNNNNGTGG	4 cut(s)	326, 361, 577, 612
CviAII	CATG	8 cut(s)	183, 213, 221, 364, 473, 525, 563, 667
CviQI	GTAC	3 cut(s)	269, 586, 788
DdeI	CTNAG	3 cut(s)	80, 483, 531
DraI	TTTAAA	1 cut(s)	636
Eam1104I	CTCTTC	2 cut(s)	702, 819
EarI	CTCTTC	2 cut(s)	702, 819
Eco32I	GATATC	1 cut(s)	470
Eco47I	GGWCC	2 cut(s)	41, 196
EcoNI	CCTNNNNNAGG	1 cut(s)	534
EcoO109I	RGGNCCY	1 cut(s)	196
EcoRV	GATATC	1 cut(s)	470
FaeI	CATG	8 cut(s)	186, 216, 224, 367, 476, 528, 566, 670
FaqI	GGGAC	2 cut(s)	209, 708
FatI	CATG	8 cut(s)	182, 212, 220, 363, 472, 524, 562, 666
FauNDI	CATATG	1 cut(s)	259
FokI	GGATG	2 cut(s)	256, 260
FspBI	CTAG	5 cut(s)	398, 548, 618, 698, 791
HaeIII	GGCC	4 cut(s)	117, 349, 406, 713
HapII	CCGG	1 cut(s)	821
Hin1II	CATG	8 cut(s)	186, 216, 224, 367, 476, 528, 566, 670
HindIII	AAGCTT	1 cut(s)	753
HinfI	GANTC	3 cut(s)	253, 370, 439
HpaII	CCGG	1 cut(s)	821
Hpy166II	GTNNAC	1 cut(s)	489
Hpy188I	TCNGA	1 cut(s)	534
Hpy188III	TCNNGA	1 cut(s)	338
Hpy8I	GTNNAC	1 cut(s)	489
HpyAV	CCTTC	4 cut(s)	396, 500, 606, 758
HpyCH4III	ACNGT	1 cut(s)	746
HpyCH4V	TGCA	4 cut(s)	224, 452, 489, 814
HpyF3I	CTNAG	3 cut(s)	80, 483, 531
Hsp92II	CATG	8 cut(s)	186, 216, 224, 367, 476, 528, 566, 670
LmnI	GCTCC	1 cut(s)	729
LpnPI	CCDG	6 cut(s)	48, 342, 346, 582, 640, 834
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	5 cut(s)	398, 548, 618, 698, 791
MaeIII	GTNAC	3 cut(s)	127, 311, 767
MboII	GAAGA	9 cut(s)	96, 128, 156, 365, 429, 674, 719, 836, 842
MhlI	GDGCHC	1 cut(s)	491
MluCI	AATT	6 cut(s)	22, 88, 149, 420, 715, 838
MlyI	GAGTC	1 cut(s)	262
MmeI	TCCRAC	3 cut(s)	19, 221, 751
MseI	TTAA	5 cut(s)	159, 635, 656, 842, 850
MslI	CAYNNNNRTG	1 cut(s)	484
MspI	CCGG	1 cut(s)	821
NdeI	CATATG	1 cut(s)	259
NlaIII	CATG	8 cut(s)	186, 216, 224, 367, 476, 528, 566, 670
NlaIV	GGNNCC	2 cut(s)	197, 625
NmuCI	GTSAC	2 cut(s)	127, 767
NspI	RCATGY	2 cut(s)	367, 528
PaeI	GCATGC	1 cut(s)	367
PciI	ACATGT	1 cut(s)	524
PfeI	GAWTC	2 cut(s)	370, 439
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
PpuMI	RGGWCCY	1 cut(s)	196
PscI	ACATGT	1 cut(s)	524
PsiI	TTATAA	1 cut(s)	87
Psp5II	RGGWCCY	1 cut(s)	196
PspN4I	GGNNCC	2 cut(s)	197, 625
PspPI	GGNCC	3 cut(s)	41, 196, 405
PspPPI	RGGWCCY	1 cut(s)	196
PsrI	GAACNNNNNNTAC	2 cut(s)	199, 231
RsaI	GTAC	3 cut(s)	270, 587, 789
RsaNI	GTAC	3 cut(s)	269, 586, 788
RseI	CAYNNNNRTG	1 cut(s)	484
SaqAI	TTAA	5 cut(s)	159, 635, 656, 842, 850
Sau96I	GGNCC	3 cut(s)	41, 196, 405
SchI	GAGTC	1 cut(s)	262
SduI	GDGCHC	1 cut(s)	491
SetI	ASST	9 cut(s)	37, 129, 201, 451, 462, 511, 556, 757, 769
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	461
SinI	GGWCC	2 cut(s)	41, 196
SmiMI	CAYNNNNRTG	1 cut(s)	484
SphI	GCATGC	1 cut(s)	367
Sse9I	AATT	6 cut(s)	22, 88, 149, 420, 715, 838
SspI	AATATT	1 cut(s)	51
SspMI	CTAG	5 cut(s)	398, 548, 618, 698, 791
TaaI	ACNGT	1 cut(s)	746
TaqI	TCGA	1 cut(s)	123
TaqII	GACCGA	1 cut(s)	315
TasI	AATT	6 cut(s)	22, 88, 149, 420, 715, 838
TatI	WGTACW	2 cut(s)	268, 585
TfiI	GAWTC	2 cut(s)	370, 439
Tru1I	TTAA	5 cut(s)	159, 635, 656, 842, 850
Tru9I	TTAA	5 cut(s)	159, 635, 656, 842, 850
TseFI	GTSAC	2 cut(s)	127, 767
Tsp45I	GTSAC	2 cut(s)	127, 767
TspDTI	ATGAA	3 cut(s)	128, 307, 519
VneI	GTGCAC	1 cut(s)	487
VpaK11BI	GGWCC	2 cut(s)	41, 196
XagI	CCTNNNNNAGG	1 cut(s)	534
XapI	RAATTY	2 cut(s)	149, 420
XceI	RCATGY	2 cut(s)	367, 528
XspI	CTAG	5 cut(s)	398, 548, 618, 698, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.