Rroxscaffold_2G00126000

Bifunctional 3-dehydroquinate dehydratase shikimate dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
61086823 .. 61092711
5889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00126000.1

Sequence Viewer

Length: 1455 bp
ATGGATTTTAGTACTACCGGTGTCATTTTGCTCATTATAAACATAATTTGTCCGATGATTTTCCTGCGAAACTCCCAGCAACTCCCATCTGATAGTTTGTACTTTTCTAGACCAAAGTGGCAAGGTGGTCAGTATGATGGTGATGAAAAACATCGACTGGATGCTCTTCGATTAGCGATGGAGCTTGGAGCTGATTACATTGATGTCGAGTTTCAGGTTGCTCATGAATTCATCGATTCCATATATGGAAAGAAGCCTGACAAGTTTAAAGTTATTGTTTCTTCCCACAACTATCAAGATACTCCATCTGTCGAGGATCTCGGAGATCTTGTTGCTAGAATGCAAGCCACTGGAGCTGACATAGTCAGCATCACAACCACTGCCTTGGATATTACTGACGTAGCACGCATTTTTCAGATAACTGTGCATTCTCAAGTCCCAGTAATAGGACTTGCAATGGGTGAGAGGGGCTTGATTTCTAGGATACTCTGCGCAAAATTTGGTGGTTACCTTACTTCTGGTACACTCGATTCAGGAATTGTTTCAGTTCCTAAAGAACCTGCCATCAAGGATATATTACATGTATACAATTTCAGACTGATAAGACCTGATACAAAACTGTTTGGTGTTATTGGAAAGCCTATCAGCCACAGCAAATCTCCTCTTCTCTACAATGAAGGATTCAAGTCAGTAGGTTTCGATGGAGTTTATCTACATCTTTTGGTAGATGACATTGCAAATTTTCTCCGTACTTACTCATCAACTGACTTTTCTGGATTCAGCGTTGGAATTCCTCACAAGGAAGCTGCAGTTAAGTGCTGTGATGAGGTTGATCCAGTTGCCAAGTCAATAGGAGCTGTTAACTGCATTGTAAGGAGGCCAACTGATGGGAAGTTACTTGGCTTAAATACTGACTATTTTGGGTCTATTTCTGCTATCGAGGATGGACTTCGAGGTTCACATGATAGAGGCAATACCACTGGTTCACCTTTAGCTGGTAGGTTGTTTGTTGTCATGGGTGCCGGAGGTGCTGGAAAGGCGCTTGCTTATGGTGCAAAGCAGAAGGGAGCTAGAATTGTTATTGCCAACCGCAAATATGATCGAGCCAGAAAACTTGCAGACGAAGTTGGAGGAGATGCTTTGTCTTTCGCTGAATTAGAAAATTTCCACCCAGAGGACGGCACGGTTCTTGCAAATGCAACATCTGTCGGAATGCAACCGAATATTGATGAGACACCTATTCCTAAGCATGCTCTGAGATCATATTCGCTGGTGTTTGATGCCGTTTACAACCCCAAAATGACTAGACTTTTGAGCGAAGCTGCGGAGTCCGGTGTCACAGTTGTTAGTGGGGTTGAGATGCTCATTGGACAGGCATATGAACAGTTTGAGAGGTTCACCGGATTGCCTGCACCAAAGAAACTGTTTAGGAATGTTATGGAAAATTGCCTTTGA

Protein Analysis

484

Amino Acids

52.66

Weight (kDa)

6.03

Isoelectric Point (pI)

24.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHquinase_I PF01487 26 - 196 2.8e-45 Type I 3-dehydroquinase
Shikimate_dh_N PF08501 210 - 290 5.6e-25 Shikimate dehydrogenase substrate binding domain
Shikimate_DH PF01488 332 - 388 1.7e-06 Shikimate / quinate 5-dehydrogenase
SDH_C PF18317 451 - 480 1.1e-09 Shikimate 5'-dehydrogenase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 38
Acc16I TGCGCA 1 cut(s) 493
Acc36I ACCTGC 1 cut(s) 568
AccB1I GGYRCC 1 cut(s) 1019
AccB7I CCANNNNNTGG 1 cut(s) 887
AccI GTMKAC 1 cut(s) 585
AciI CCGC 2 cut(s) 1090, 1325
AclWI GGATC 2 cut(s) 324, 827
AcsI RAATTY 5 cut(s) 227, 497, 739, 789, 1162
AfaI GTAC 4 cut(s) 13, 101, 523, 751
AfiI CCNNNNNNNGG 5 cut(s) 446, 887, 995, 1174, 1178
AflIII ACRYGT 1 cut(s) 580
AgeI ACCGGT 1 cut(s) 17
AgsI TTSAA 1 cut(s) 685
AluBI AGCT 8 cut(s) 184, 191, 356, 806, 857, 995, 1070, 1322
AluI AGCT 8 cut(s) 184, 191, 356, 806, 857, 995, 1070, 1322
Alw26I GTCTC 1 cut(s) 1226
AlwI GGATC 2 cut(s) 324, 827
AoxI GGCC 1 cut(s) 878
ApeKI GCWGC 2 cut(s) 806, 1322
ApoI RAATTY 5 cut(s) 227, 497, 739, 789, 1162
ArsI GACNNNNNNTTYG 2 cut(s) 1294, 1326
AsiGI ACCGGT 1 cut(s) 17
Asp700I GAANNNNTTC 1 cut(s) 541
AspLEI GCGC 2 cut(s) 494, 1042
AsuHPI GGTGA 4 cut(s) 152, 473, 978, 1390
BanI GGYRCC 1 cut(s) 1019
BbvI GCAGC 2 cut(s) 793, 1309
BccI CCATC 8 cut(s) 94, 131, 172, 313, 572, 695, 881, 938
BceAI ACGGC 2 cut(s) 1195, 1268
BciVI GTATCC 1 cut(s) 477
BcoDI GTCTC 1 cut(s) 1226
BfaI CTAG 5 cut(s) 108, 336, 480, 1071, 1305
BfmI CTRYAG 1 cut(s) 807
BfoI RGCGCY 1 cut(s) 1043
BfuAI ACCTGC 1 cut(s) 568
BfuI GTATCC 1 cut(s) 477
BglII AGATCT 1 cut(s) 325
BisI GCNGC 2 cut(s) 807, 1323
BlsI GCNGC 2 cut(s) 808, 1324
BmcAI AGTACT 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 1021
BmrI ACTGGG 1 cut(s) 434
BmsI GCATC 5 cut(s) 151, 378, 1126, 1270, 1350
BmuI ACTGGG 1 cut(s) 434
BpmI CTGGAG 1 cut(s) 372
Bpu10I CCTNAGC 1 cut(s) 1245
BpuEI CTTGAG 1 cut(s) 417
Bsa29I ATCGAT 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 384
BsaWI WCCGGW 3 cut(s) 17, 1331, 1400
BsaXI ACNNNNNCTCC 2 cut(s) 315, 345
Bsc4I CCNNNNNNNGG 5 cut(s) 446, 887, 995, 1174, 1178
Bse118I RCCGGY 1 cut(s) 17
Bse1I ACTGG 5 cut(s) 162, 355, 440, 836, 985
Bse3DI GCAATG 2 cut(s) 462, 732
BseCI ATCGAT 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 384
BseGI GGATG 2 cut(s) 166, 949
BseLI CCNNNNNNNGG 5 cut(s) 446, 887, 995, 1174, 1178
BseMI GCAATG 2 cut(s) 462, 732
BseMII CTCAG 1 cut(s) 1247
BseNI ACTGG 5 cut(s) 162, 355, 440, 836, 985
BseRI GAGGAG 2 cut(s) 651, 1146
BseXI GCAGC 2 cut(s) 793, 1309
BseYI CCCAGC 1 cut(s) 75
BsgI GTGCAG 1 cut(s) 1395
BshFI GGCC 1 cut(s) 880
BshNI GGYRCC 1 cut(s) 1019
BshTI ACCGGT 1 cut(s) 17
BshVI ATCGAT 1 cut(s) 234
BsiSI CCGG 4 cut(s) 18, 1023, 1332, 1401
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 5 cut(s) 446, 887, 995, 1174, 1178
BsmAI GTCTC 1 cut(s) 1226
BsmFI GGGAC 1 cut(s) 422
BsmI GAATGC 3 cut(s) 345, 427, 1218
BsnI GGCC 1 cut(s) 880
Bsp143I GATC 5 cut(s) 316, 325, 832, 1099, 1259
BspACI CCGC 2 cut(s) 1090, 1325
BspANI GGCC 1 cut(s) 880
BspCNI CTCAG 1 cut(s) 1248
BspDI ATCGAT 1 cut(s) 234
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 1021
BspMAI CTGCAG 1 cut(s) 811
BspMI ACCTGC 1 cut(s) 568
BspPI GGATC 2 cut(s) 324, 827
BspQI GCTCTTC 1 cut(s) 171
BspT107I GGYRCC 1 cut(s) 1019
BsrDI GCAATG 2 cut(s) 462, 732
BsrFI RCCGGY 1 cut(s) 17
BsrI ACTGG 5 cut(s) 162, 355, 440, 836, 985
BssAI RCCGGY 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 5 cut(s) 316, 325, 832, 1099, 1259
BssNAI GTATAC 1 cut(s) 586
BssT1I CCWWGG 1 cut(s) 384
Bst1107I GTATAC 1 cut(s) 586
Bst4CI ACNGT 6 cut(s) 424, 621, 1186, 1342, 1386, 1425
Bst6I CTCTTC 2 cut(s) 171, 669
BstC8I GCNNGC 5 cut(s) 345, 406, 1044, 1251, 1410
BstDEI CTNAG 2 cut(s) 1245, 1256
BstEII GGTNACC 1 cut(s) 506
BstF5I GGATG 2 cut(s) 166, 949
BstH2I RGCGCY 1 cut(s) 1043
BstHHI GCGC 2 cut(s) 494, 1042
BstKTI GATC 5 cut(s) 319, 328, 835, 1102, 1262
BstMAI GTCTC 1 cut(s) 1226
BstMBI GATC 5 cut(s) 316, 325, 832, 1099, 1259
BstMWI GCNNNNNNNGC 4 cut(s) 353, 1028, 1037, 1052
BstNSI RCATGY 2 cut(s) 584, 1253
BstPI GGTNACC 1 cut(s) 506
BstSFI CTRYAG 1 cut(s) 807
BstV1I GCAGC 2 cut(s) 793, 1309
BstX2I RGATCY 2 cut(s) 316, 325
BstXI CCANNNNNNTGG 1 cut(s) 385
BstYI RGATCY 2 cut(s) 316, 325
BstZ17I GTATAC 1 cut(s) 586
Bsu15I ATCGAT 1 cut(s) 234
BsuI GTATCC 1 cut(s) 477
BsuRI GGCC 1 cut(s) 880
BsuTUI ATCGAT 1 cut(s) 234
BtgZI GCGATG 1 cut(s) 191
BtsCI GGATG 2 cut(s) 166, 949
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 3 cut(s) 348, 378, 978
BveI ACCTGC 1 cut(s) 568
Cac8I GCNNGC 5 cut(s) 345, 406, 1044, 1251, 1410
CciI TCATGA 1 cut(s) 223
CfoI GCGC 2 cut(s) 494, 1042
Cfr10I RCCGGY 1 cut(s) 17
ClaI ATCGAT 1 cut(s) 234
Csp6I GTAC 4 cut(s) 12, 100, 522, 750
CspAI ACCGGT 1 cut(s) 17
CviAII CATG 5 cut(s) 224, 581, 962, 1015, 1250
CviQI GTAC 4 cut(s) 12, 100, 522, 750
DdeI CTNAG 2 cut(s) 1245, 1256
DpnI GATC 5 cut(s) 318, 327, 834, 1101, 1261
DpnII GATC 5 cut(s) 316, 325, 832, 1099, 1259
DraI TTTAAA 1 cut(s) 268
Eam1104I CTCTTC 2 cut(s) 171, 669
EarI CTCTTC 2 cut(s) 171, 669
Eco130I CCWWGG 1 cut(s) 384
Eco91I GGTNACC 1 cut(s) 506
EcoO65I GGTNACC 1 cut(s) 506
EcoRI GAATTC 2 cut(s) 227, 789
EcoT14I CCWWGG 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 5 cut(s) 227, 584, 965, 1018, 1253
FaqI GGGAC 1 cut(s) 422
FatI CATG 5 cut(s) 223, 580, 961, 1014, 1249
FauNDI CATATG 1 cut(s) 1378
FblI GTMKAC 1 cut(s) 585
Fnu4HI GCNGC 2 cut(s) 807, 1323
FokI GGATG 2 cut(s) 173, 956
Fsp4HI GCNGC 2 cut(s) 807, 1323
FspBI CTAG 5 cut(s) 108, 336, 480, 1071, 1305
FspI TGCGCA 1 cut(s) 493
GlaI GCGC 2 cut(s) 493, 1041
GluI GCNGC 2 cut(s) 807, 1323
GsaI CCCAGC 1 cut(s) 79
GsuI CTGGAG 1 cut(s) 372
HaeII RGCGCY 1 cut(s) 1043
HaeIII GGCC 1 cut(s) 880
HapII CCGG 4 cut(s) 18, 1023, 1332, 1401
HhaI GCGC 2 cut(s) 494, 1042
Hin1II CATG 5 cut(s) 227, 584, 965, 1018, 1253
Hin6I GCGC 2 cut(s) 492, 1040
HinP1I GCGC 2 cut(s) 492, 1040
HincII GTYRAC 1 cut(s) 862
HindII GTYRAC 1 cut(s) 862
HinfI GANTC 5 cut(s) 236, 530, 681, 777, 1328
HpaI GTTAAC 1 cut(s) 862
HpaII CCGG 4 cut(s) 18, 1023, 1332, 1401
HphI GGTGA 4 cut(s) 152, 473, 978, 1390
Hpy166II GTNNAC 7 cut(s) 524, 586, 862, 959, 986, 1288, 1398
Hpy188I TCNGA 7 cut(s) 54, 91, 323, 417, 596, 1211, 1257
Hpy188III TCNNGA 5 cut(s) 108, 224, 296, 534, 774
Hpy8I GTNNAC 7 cut(s) 524, 586, 862, 959, 986, 1288, 1398
HpyAV CCTTC 2 cut(s) 671, 1057
HpyCH4III ACNGT 6 cut(s) 424, 621, 1186, 1342, 1386, 1425
HpyCH4IV ACGT 1 cut(s) 399
HpyF10VI GCNNNNNNNGC 4 cut(s) 353, 1028, 1037, 1052
HpyF3I CTNAG 2 cut(s) 1245, 1256
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 5 cut(s) 227, 584, 965, 1018, 1253
HspAI GCGC 2 cut(s) 492, 1040
KspAI GTTAAC 1 cut(s) 862
Kzo9I GATC 5 cut(s) 316, 325, 832, 1099, 1259
LguI GCTCTTC 1 cut(s) 171
LmnI GCTCC 5 cut(s) 181, 188, 353, 854, 1067
Lsp1109I GCAGC 2 cut(s) 793, 1309
LweI GCATC 5 cut(s) 151, 378, 1126, 1270, 1350
MaeI CTAG 5 cut(s) 108, 336, 480, 1071, 1305
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 3 cut(s) 506, 894, 1336
MalI GATC 5 cut(s) 318, 327, 834, 1101, 1261
MboI GATC 5 cut(s) 316, 325, 832, 1099, 1259
MboII GAAGA 3 cut(s) 158, 273, 656
MflI RGATCY 2 cut(s) 316, 325
MlyI GAGTC 1 cut(s) 1337
MmeI TCCRAC 3 cut(s) 766, 1108, 1189
MroXI GAANNNNTTC 1 cut(s) 541
MseI TTAA 4 cut(s) 267, 813, 861, 905
MspI CCGG 4 cut(s) 18, 1023, 1332, 1401
Mva1269I GAATGC 3 cut(s) 345, 427, 1218
MwoI GCNNNNNNNGC 4 cut(s) 353, 1028, 1037, 1052
NdeI CATATG 1 cut(s) 1378
NdeII GATC 5 cut(s) 316, 325, 832, 1099, 1259
NlaIII CATG 5 cut(s) 227, 584, 965, 1018, 1253
NlaIV GGNNCC 1 cut(s) 1021
NmuCI GTSAC 1 cut(s) 1336
NsbI TGCGCA 1 cut(s) 493
NspI RCATGY 2 cut(s) 584, 1253
PaeI GCATGC 1 cut(s) 1253
PagI TCATGA 1 cut(s) 223
PciI ACATGT 1 cut(s) 580
PciSI GCTCTTC 1 cut(s) 171
PctI GAATGC 3 cut(s) 345, 427, 1218
PdmI GAANNNNTTC 1 cut(s) 541
PfeI GAWTC 4 cut(s) 236, 530, 681, 777
PflFI GACNNNGTC 1 cut(s) 362
PflMI CCANNNNNTGG 1 cut(s) 887
PinAI ACCGGT 1 cut(s) 17
PkrI GCNGC 2 cut(s) 808, 1324
PleI GAGTC 1 cut(s) 1336
PpsI GAGTC 1 cut(s) 1336
PscI ACATGT 1 cut(s) 580
PsiI TTATAA 1 cut(s) 38
PspEI GGTNACC 1 cut(s) 506
PspFI CCCAGC 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 1021
PstI CTGCAG 1 cut(s) 811
PsuI RGATCY 2 cut(s) 316, 325
PsyI GACNNNGTC 1 cut(s) 362
RsaI GTAC 4 cut(s) 13, 101, 523, 751
RsaNI GTAC 4 cut(s) 12, 100, 522, 750
SapI GCTCTTC 1 cut(s) 171
SaqAI TTAA 4 cut(s) 267, 813, 861, 905
SatI GCNGC 2 cut(s) 807, 1323
Sau3AI GATC 5 cut(s) 316, 325, 832, 1099, 1259
ScaI AGTACT 1 cut(s) 13
SchI GAGTC 1 cut(s) 1337
SfaNI GCATC 5 cut(s) 151, 378, 1126, 1270, 1350
SfcI CTRYAG 1 cut(s) 807
SmlI CTYRAG 1 cut(s) 432
SmoI CTYRAG 1 cut(s) 432
SphI GCATGC 1 cut(s) 1253
SsiI CCGC 2 cut(s) 1090, 1325
SspI AATATT 1 cut(s) 1225
SspMI CTAG 5 cut(s) 108, 336, 480, 1071, 1305
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 6 cut(s) 424, 621, 1186, 1342, 1386, 1425
TaiI ACGT 1 cut(s) 402
TatI WGTACW 2 cut(s) 11, 99
TfiI GAWTC 4 cut(s) 236, 530, 681, 777
Tru1I TTAA 4 cut(s) 267, 813, 861, 905
Tru9I TTAA 4 cut(s) 267, 813, 861, 905
TscAI CASTG 3 cut(s) 355, 385, 985
TseFI GTSAC 1 cut(s) 1336
TseI GCWGC 2 cut(s) 806, 1322
Tsp45I GTSAC 1 cut(s) 1336
TspDTI ATGAA 5 cut(s) 159, 220, 240, 690, 1395
TspGWI ACGGA 1 cut(s) 737
TspRI CASTG 3 cut(s) 355, 385, 985
Tth111I GACNNNGTC 1 cut(s) 362
Van91I CCANNNNNTGG 1 cut(s) 887
XapI RAATTY 5 cut(s) 227, 497, 739, 789, 1162
XbaI TCTAGA 1 cut(s) 107
XceI RCATGY 2 cut(s) 584, 1253
XmiI GTMKAC 1 cut(s) 585
XmnI GAANNNNTTC 1 cut(s) 541
XspI CTAG 5 cut(s) 108, 336, 480, 1071, 1305
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.