Bifunctional 3-dehydroquinate dehydratase shikimate dehydrogenase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G06350 |
| fragaria_vesca | FvH4_1g23213 FvH4_1g23213 FvH4_1g23213 FvH4_1g23232 FvH4_1g23232 FvH4_1g23232 |
| malus_domestica | MD00G1130500.v1.1 MD15G1335600.v1.1 |
| prunus_persica | Prupe.6G166100_v2.0.a1 Prupe.6G166100_v2.0.a1 Prupe.6G166100_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1 |
| pyrus_communis | pycom01g04680 pycom01g04700 pycom15g28990 |
| rosa_chinensis | RchiOBHm_Chr2g0117991 RchiOBHm_Chr2g0118061 |
| rosa_laevigata | RLG00000018384 RLG00000018389 RLG00000018397 |
| rosa_multiflora | Rmu_sc0000948.1_g000018 Rmu_sc0000948.1_g000032 |
| rosa_roxburghii | Rroxscaffold_2G00125870 Rroxscaffold_2G00126000 Rroxscaffold_2G00126080 Rroxscaffold_5G00352100 |
| rosa_rugosa | Rorug02G0215100 Rorug02G0215200 Rorug02G0215500.1 Rorug02G0217000 |
| rosa_samantha | Rh2BG283700 Rh2DG280600 Rh2DG298000 Rh2DG298700 |
| rosa_wichuraiana | Rw2G021480 Rw2G021530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1025 |
| Acc16I | TGCGCA | 1 cut(s) | 646 |
| AciI | CCGC | 1 cut(s) | 1243 |
| AclWI | GGATC | 2 cut(s) | 189, 980 |
| AcsI | RAATTY | 2 cut(s) | 380, 650 |
| AcuI | CTGAAG | 2 cut(s) | 350, 1497 |
| AfaI | GTAC | 3 cut(s) | 676, 824, 867 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 49, 599, 1040, 1148, 1327, 1330, 1331 |
| AflII | CTTAAG | 1 cut(s) | 965 |
| AjnI | CCWGG | 1 cut(s) | 703 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1503, 1535 |
| AleI | CACNNNNGTG | 2 cut(s) | 770, 967 |
| AluBI | AGCT | 9 cut(s) | 337, 344, 364, 509, 701, 959, 1010, 1148, 1602 |
| AluI | AGCT | 9 cut(s) | 337, 344, 364, 509, 701, 959, 1010, 1148, 1602 |
| Alw21I | GWGCWC | 1 cut(s) | 94 |
| Alw26I | GTCTC | 4 cut(s) | 436, 1024, 1302, 1379 |
| AlwI | GGATC | 2 cut(s) | 189, 980 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 704 |
| Ama87I | CYCGRG | 1 cut(s) | 685 |
| AoxI | GGCC | 4 cut(s) | 40, 192, 758, 1488 |
| ApeKI | GCWGC | 1 cut(s) | 959 |
| ApoI | RAATTY | 2 cut(s) | 380, 650 |
| AseI | ATTAAT | 1 cut(s) | 1014 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 194, 694, 1578 |
| AspLEI | GCGC | 2 cut(s) | 647, 1195 |
| AspS9I | GGNCC | 2 cut(s) | 758, 1488 |
| AsuHPI | GGTGA | 4 cut(s) | 305, 626, 804, 1131 |
| AvaI | CYCGRG | 1 cut(s) | 685 |
| Bbv12I | GWGCWC | 1 cut(s) | 94 |
| BbvI | GCAGC | 1 cut(s) | 946 |
| BccI | CCATC | 4 cut(s) | 284, 325, 466, 1091 |
| BciT130I | CCWGG | 1 cut(s) | 705 |
| BciVI | GTATCC | 1 cut(s) | 630 |
| BcoDI | GTCTC | 4 cut(s) | 436, 1024, 1302, 1379 |
| BfoI | RGCGCY | 1 cut(s) | 1196 |
| BfrI | CTTAAG | 1 cut(s) | 965 |
| BfuI | GTATCC | 1 cut(s) | 630 |
| BglII | AGATCT | 1 cut(s) | 1412 |
| BisI | GCNGC | 1 cut(s) | 960 |
| BlsI | GCNGC | 1 cut(s) | 961 |
| Bme1390I | CCNGG | 1 cut(s) | 705 |
| BmeT110I | CYCGRG | 1 cut(s) | 685 |
| BmgT120I | GGNCC | 2 cut(s) | 758, 1488 |
| BmiI | GGNNCC | 1 cut(s) | 1489 |
| BmrFI | CCNGG | 1 cut(s) | 705 |
| BmrI | ACTGGG | 1 cut(s) | 1563 |
| BmsI | GCATC | 4 cut(s) | 304, 1279, 1423, 1462 |
| BmuI | ACTGGG | 1 cut(s) | 1563 |
| BpmI | CTGGAG | 3 cut(s) | 525, 884, 1197 |
| BpuEI | CTTGAG | 2 cut(s) | 200, 570 |
| BsaI | GGTCTC | 1 cut(s) | 1024 |
| BsaJI | CCNNGG | 2 cut(s) | 151, 537 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 849, 879, 1586 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 49, 599, 1040, 1148, 1327, 1330, 1331 |
| Bse1I | ACTGG | 4 cut(s) | 508, 989, 1138, 1558 |
| Bse3DI | GCAATG | 1 cut(s) | 885 |
| BseBI | CCWGG | 1 cut(s) | 705 |
| BseDI | CCNNGG | 2 cut(s) | 151, 537 |
| BseGI | GGATG | 2 cut(s) | 1102, 1477 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 49, 599, 1040, 1148, 1327, 1330, 1331 |
| BseMI | GCAATG | 1 cut(s) | 885 |
| BseMII | CTCAG | 1 cut(s) | 1400 |
| BseNI | ACTGG | 4 cut(s) | 508, 989, 1138, 1558 |
| BseRI | GAGGAG | 4 cut(s) | 82, 85, 1299, 1343 |
| BseXI | GCAGC | 1 cut(s) | 946 |
| BsgI | GTGCAG | 1 cut(s) | 945 |
| BshFI | GGCC | 4 cut(s) | 42, 194, 760, 1490 |
| BsiHKAI | GWGCWC | 1 cut(s) | 94 |
| BsiHKCI | CYCGRG | 1 cut(s) | 685 |
| BslFI | GGGAC | 1 cut(s) | 575 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 49, 599, 1040, 1148, 1327, 1330, 1331 |
| BsmAI | GTCTC | 4 cut(s) | 436, 1024, 1302, 1379 |
| BsmFI | GGGAC | 1 cut(s) | 575 |
| BsmI | GAATGC | 2 cut(s) | 580, 1371 |
| BsnI | GGCC | 4 cut(s) | 42, 194, 760, 1490 |
| Bso31I | GGTCTC | 1 cut(s) | 1024 |
| BsoBI | CYCGRG | 1 cut(s) | 685 |
| Bsp1286I | GDGCHC | 1 cut(s) | 94 |
| Bsp1407I | TGTACA | 2 cut(s) | 822, 865 |
| Bsp143I | GATC | 6 cut(s) | 181, 211, 304, 985, 1252, 1412 |
| Bsp19I | CCATGG | 1 cut(s) | 537 |
| BspACI | CCGC | 1 cut(s) | 1243 |
| BspANI | GGCC | 4 cut(s) | 42, 194, 760, 1490 |
| BspCNI | CTCAG | 1 cut(s) | 1401 |
| BspHI | TCATGA | 1 cut(s) | 376 |
| BspLI | GGNNCC | 1 cut(s) | 1489 |
| BspPI | GGATC | 2 cut(s) | 189, 980 |
| BspTI | CTTAAG | 1 cut(s) | 965 |
| BspTNI | GGTCTC | 1 cut(s) | 1024 |
| BsrDI | GCAATG | 1 cut(s) | 885 |
| BsrGI | TGTACA | 2 cut(s) | 822, 865 |
| BsrI | ACTGG | 4 cut(s) | 508, 989, 1138, 1558 |
| BssECI | CCNNGG | 2 cut(s) | 151, 537 |
| BssMI | GATC | 6 cut(s) | 181, 211, 304, 985, 1252, 1412 |
| BssT1I | CCWWGG | 2 cut(s) | 151, 537 |
| Bst2UI | CCWGG | 1 cut(s) | 705 |
| Bst4CI | ACNGT | 3 cut(s) | 577, 753, 1539 |
| Bst6I | CTCTTC | 2 cut(s) | 439, 916 |
| BstAFI | CTTAAG | 1 cut(s) | 965 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 533, 1229 |
| BstAUI | TGTACA | 2 cut(s) | 822, 865 |
| BstC8I | GCNNGC | 6 cut(s) | 27, 559, 1186, 1197, 1404, 1563 |
| BstDEI | CTNAG | 2 cut(s) | 1398, 1409 |
| BstDSI | CCRYGG | 1 cut(s) | 537 |
| BstF5I | GGATG | 2 cut(s) | 1102, 1477 |
| BstH2I | RGCGCY | 1 cut(s) | 1196 |
| BstHHI | GCGC | 2 cut(s) | 647, 1195 |
| BstKTI | GATC | 6 cut(s) | 184, 214, 307, 988, 1255, 1415 |
| BstMAI | GTCTC | 4 cut(s) | 436, 1024, 1302, 1379 |
| BstMBI | GATC | 6 cut(s) | 181, 211, 304, 985, 1252, 1412 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 506, 533, 1085, 1181, 1190, 1205, 1229, 1487 |
| BstNI | CCWGG | 1 cut(s) | 705 |
| BstSCI | CCNGG | 1 cut(s) | 703 |
| BstV1I | GCAGC | 1 cut(s) | 946 |
| BstX2I | RGATCY | 1 cut(s) | 1412 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 538 |
| BstYI | RGATCY | 1 cut(s) | 1412 |
| BsuI | GTATCC | 1 cut(s) | 630 |
| BsuRI | GGCC | 4 cut(s) | 42, 194, 760, 1490 |
| BtgI | CCRYGG | 1 cut(s) | 537 |
| BtgZI | GCGATG | 1 cut(s) | 344 |
| BtsCI | GGATG | 2 cut(s) | 1102, 1477 |
| BtsI | GCAGTG | 1 cut(s) | 531 |
| BtsIMutI | CAGTG | 4 cut(s) | 501, 531, 546, 1551 |
| Cac8I | GCNNGC | 6 cut(s) | 27, 559, 1186, 1197, 1404, 1563 |
| CaiI | CAGNNNCTG | 1 cut(s) | 704 |
| CciI | TCATGA | 1 cut(s) | 376 |
| CfoI | GCGC | 2 cut(s) | 647, 1195 |
| Cfr13I | GGNCC | 2 cut(s) | 758, 1488 |
| CseI | GACGC | 1 cut(s) | 1470 |
| Csp6I | GTAC | 3 cut(s) | 675, 823, 866 |
| CviAII | CATG | 3 cut(s) | 377, 538, 1336 |
| CviQI | GTAC | 3 cut(s) | 675, 823, 866 |
| DdeI | CTNAG | 2 cut(s) | 1398, 1409 |
| DpnI | GATC | 6 cut(s) | 183, 213, 306, 987, 1254, 1414 |
| DpnII | GATC | 6 cut(s) | 181, 211, 304, 985, 1252, 1412 |
| DraI | TTTAAA | 1 cut(s) | 421 |
| Eam1104I | CTCTTC | 2 cut(s) | 439, 916 |
| EarI | CTCTTC | 2 cut(s) | 439, 916 |
| Eco130I | CCWWGG | 2 cut(s) | 151, 537 |
| Eco147I | AGGCCT | 1 cut(s) | 194 |
| Eco31I | GGTCTC | 1 cut(s) | 1024 |
| Eco32I | GATATC | 1 cut(s) | 544 |
| Eco57I | CTGAAG | 2 cut(s) | 350, 1497 |
| Eco88I | CYCGRG | 1 cut(s) | 685 |
| EcoO109I | RGGNCCY | 1 cut(s) | 758 |
| EcoRI | GAATTC | 1 cut(s) | 380 |
| EcoRII | CCWGG | 1 cut(s) | 703 |
| EcoRV | GATATC | 1 cut(s) | 544 |
| EcoT14I | CCWWGG | 2 cut(s) | 151, 537 |
| ErhI | CCWWGG | 2 cut(s) | 151, 537 |
| FaeI | CATG | 3 cut(s) | 380, 541, 1339 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 294, 326, 948, 980, 1562, 1594 |
| FaqI | GGGAC | 1 cut(s) | 575 |
| FatI | CATG | 3 cut(s) | 376, 537, 1335 |
| FauNDI | CATATG | 1 cut(s) | 1531 |
| Fnu4HI | GCNGC | 1 cut(s) | 960 |
| FokI | GGATG | 2 cut(s) | 1109, 1484 |
| Fsp4HI | GCNGC | 1 cut(s) | 960 |
| FspI | TGCGCA | 1 cut(s) | 646 |
| GlaI | GCGC | 2 cut(s) | 646, 1194 |
| GluI | GCNGC | 1 cut(s) | 960 |
| GsuI | CTGGAG | 3 cut(s) | 525, 884, 1197 |
| HaeII | RGCGCY | 1 cut(s) | 1196 |
| HaeIII | GGCC | 4 cut(s) | 42, 194, 760, 1490 |
| HgaI | GACGC | 1 cut(s) | 1470 |
| HhaI | GCGC | 2 cut(s) | 647, 1195 |
| Hin1II | CATG | 3 cut(s) | 380, 541, 1339 |
| Hin6I | GCGC | 2 cut(s) | 645, 1193 |
| HinP1I | GCGC | 2 cut(s) | 645, 1193 |
| HincII | GTYRAC | 1 cut(s) | 710 |
| HindII | GTYRAC | 1 cut(s) | 710 |
| HinfI | GANTC | 9 cut(s) | 5, 107, 233, 389, 683, 834, 930, 1339, 1461 |
| HphI | GGTGA | 4 cut(s) | 305, 626, 804, 1131 |
| Hpy166II | GTNNAC | 5 cut(s) | 710, 1112, 1139, 1441, 1551 |
| Hpy188I | TCNGA | 2 cut(s) | 1410, 1584 |
| Hpy188III | TCNNGA | 6 cut(s) | 217, 377, 687, 901, 1465, 1605 |
| Hpy8I | GTNNAC | 5 cut(s) | 710, 1112, 1139, 1441, 1551 |
| HpyAV | CCTTC | 8 cut(s) | 53, 184, 205, 269, 715, 824, 1210, 1462 |
| HpyCH4III | ACNGT | 3 cut(s) | 577, 753, 1539 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 506, 533, 1085, 1181, 1190, 1205, 1229, 1487 |
| HpyF3I | CTNAG | 2 cut(s) | 1398, 1409 |
| Hsp92II | CATG | 3 cut(s) | 380, 541, 1339 |
| HspAI | GCGC | 2 cut(s) | 645, 1193 |
| Kzo9I | GATC | 6 cut(s) | 181, 211, 304, 985, 1252, 1412 |
| LmnI | GCTCC | 8 cut(s) | 97, 334, 341, 506, 706, 1007, 1220, 1607 |
| Lsp1109I | GCAGC | 1 cut(s) | 946 |
| LweI | GCATC | 4 cut(s) | 304, 1279, 1423, 1462 |
| MalI | GATC | 6 cut(s) | 183, 213, 306, 987, 1254, 1414 |
| MboI | GATC | 6 cut(s) | 181, 211, 304, 985, 1252, 1412 |
| MboII | GAAGA | 4 cut(s) | 24, 426, 532, 903 |
| MfeI | CAATTG | 2 cut(s) | 1233, 1278 |
| MflI | RGATCY | 1 cut(s) | 1412 |
| MhlI | GDGCHC | 1 cut(s) | 94 |
| MluCI | AATT | 9 cut(s) | 84, 380, 650, 742, 942, 1015, 1233, 1278, 1315 |
| MlyI | GAGTC | 3 cut(s) | 383, 677, 1455 |
| MmeI | TCCRAC | 1 cut(s) | 1488 |
| MroXI | GAANNNNTTC | 3 cut(s) | 194, 694, 1578 |
| MseI | TTAA | 4 cut(s) | 228, 420, 966, 1014 |
| MslI | CAYNNNNRTG | 4 cut(s) | 536, 770, 967, 1119 |
| MspCI | CTTAAG | 1 cut(s) | 965 |
| MspR9I | CCNGG | 1 cut(s) | 705 |
| MunI | CAATTG | 2 cut(s) | 1233, 1278 |
| Mva1269I | GAATGC | 2 cut(s) | 580, 1371 |
| MvaI | CCWGG | 1 cut(s) | 705 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 506, 533, 1085, 1181, 1190, 1205, 1229, 1487 |
| NcoI | CCATGG | 1 cut(s) | 537 |
| NdeI | CATATG | 1 cut(s) | 1531 |
| NdeII | GATC | 6 cut(s) | 181, 211, 304, 985, 1252, 1412 |
| NlaIII | CATG | 3 cut(s) | 380, 541, 1339 |
| NlaIV | GGNNCC | 1 cut(s) | 1489 |
| NsbI | TGCGCA | 1 cut(s) | 646 |
| OliI | CACNNNNGTG | 2 cut(s) | 770, 967 |
| PagI | TCATGA | 1 cut(s) | 376 |
| PceI | AGGCCT | 1 cut(s) | 194 |
| PctI | GAATGC | 2 cut(s) | 580, 1371 |
| PdmI | GAANNNNTTC | 3 cut(s) | 194, 694, 1578 |
| PfeI | GAWTC | 6 cut(s) | 5, 107, 233, 834, 930, 1339 |
| PkrI | GCNGC | 1 cut(s) | 961 |
| PleI | GAGTC | 3 cut(s) | 383, 677, 1455 |
| PpsI | GAGTC | 3 cut(s) | 383, 677, 1455 |
| PshBI | ATTAAT | 1 cut(s) | 1014 |
| PsiI | TTATAA | 1 cut(s) | 1025 |
| Psp6I | CCWGG | 1 cut(s) | 703 |
| PspGI | CCWGG | 1 cut(s) | 703 |
| PspN4I | GGNNCC | 1 cut(s) | 1489 |
| PspPI | GGNCC | 2 cut(s) | 758, 1488 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1120, 1152 |
| PstNI | CAGNNNCTG | 1 cut(s) | 704 |
| PsuI | RGATCY | 1 cut(s) | 1412 |
| RsaI | GTAC | 3 cut(s) | 676, 824, 867 |
| RsaNI | GTAC | 3 cut(s) | 675, 823, 866 |
| RseI | CAYNNNNRTG | 4 cut(s) | 536, 770, 967, 1119 |
| SaqAI | TTAA | 4 cut(s) | 228, 420, 966, 1014 |
| SatI | GCNGC | 1 cut(s) | 960 |
| Sau3AI | GATC | 6 cut(s) | 181, 211, 304, 985, 1252, 1412 |
| Sau96I | GGNCC | 2 cut(s) | 758, 1488 |
| SchI | GAGTC | 3 cut(s) | 383, 677, 1455 |
| ScrFI | CCNGG | 1 cut(s) | 705 |
| SduI | GDGCHC | 1 cut(s) | 94 |
| SfaNI | GCATC | 4 cut(s) | 304, 1279, 1423, 1462 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 536, 770, 967, 1119 |
| SmlI | CTYRAG | 3 cut(s) | 215, 585, 965 |
| SmoI | CTYRAG | 3 cut(s) | 215, 585, 965 |
| Sse9I | AATT | 9 cut(s) | 84, 380, 650, 742, 942, 1015, 1233, 1278, 1315 |
| SseBI | AGGCCT | 1 cut(s) | 194 |
| SsiI | CCGC | 1 cut(s) | 1243 |
| StuI | AGGCCT | 1 cut(s) | 194 |
| StyD4I | CCNGG | 1 cut(s) | 703 |
| StyI | CCWWGG | 2 cut(s) | 151, 537 |
| TaaI | ACNGT | 3 cut(s) | 577, 753, 1539 |
| TaqI | TCGA | 5 cut(s) | 307, 322, 360, 387, 1255 |
| TasI | AATT | 9 cut(s) | 84, 380, 650, 742, 942, 1015, 1233, 1278, 1315 |
| TatI | WGTACW | 2 cut(s) | 822, 865 |
| TfiI | GAWTC | 6 cut(s) | 5, 107, 233, 834, 930, 1339 |
| Tru1I | TTAA | 4 cut(s) | 228, 420, 966, 1014 |
| Tru9I | TTAA | 4 cut(s) | 228, 420, 966, 1014 |
| TscAI | CASTG | 4 cut(s) | 508, 538, 553, 1558 |
| TseI | GCWGC | 1 cut(s) | 959 |
| TspDTI | ATGAA | 8 cut(s) | 312, 373, 393, 734, 843, 993, 1507, 1548 |
| TspGWI | ACGGA | 2 cut(s) | 649, 1079 |
| TspRI | CASTG | 4 cut(s) | 508, 538, 553, 1558 |
| Vha464I | CTTAAG | 1 cut(s) | 965 |
| VspI | ATTAAT | 1 cut(s) | 1014 |
| XapI | RAATTY | 2 cut(s) | 380, 650 |
| XmnI | GAANNNNTTC | 3 cut(s) | 194, 694, 1578 |