Prupe.6G166200_v2.0.a1

Bifunctional 3-dehydroquinate dehydratase shikimate dehydrogenase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
16801890 .. 16812884
10995 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G166200.4

Sequence Viewer

Length: 1608 bp
ATGGATTCTACTCAAAACATTTTGCTTGCTTCTTCTGGTGGCCTTCAAGTGGGAAGTAAAGGAGTGAGGAGGAGTTCAACCCTAATTTGTGCTCCAATAATGGCAGAATCAGTTGATAAGATGTTGATTGATATGGACAAGGCAAAAACCCTTGGTGCTGACCTTTTGGAGATTAGATTGGATCATTTGAAGGCCTTCAATGACAATGTTGATCTCAAGACCCTTATTAAAGAATCCCCTTTGCCCACTCTTTTCACATATAGACCAAAATGGGAAGGTGGTCAGTATGATGGTGATGAAAAAGATCGACTTGATGCACTTCGATTAGCGATGGAGCTTGGAGCTGATTACATTGATGTCGAGCTTCAGGTTGCTCATGAATTCATCGACTCCATATATGGAAAGAAACCTGAAAAGTTTAAAGTTATTGTCTCTTCTCACAACTATCAACATACTCCATCTGTTGAGGCTCTTGGAAATCTTGTTGCAAGAATACAAGCCACTGGAGCTGACATAGTGAAGATTGCAACCACTGCCATGGATATCACTGATGTAGCACGCATTTTTCAAATAACTGTGCATTCTCAAGTCCCAACGATAGGACTTGTAATGGGTGAGAGGGGTTTGATTTCACGGATACTTTGCGCAAAATTTGGTGGTTATCTTACTTTTGGTACGCTGGACTCGGGAATAGTTTCAGCTCCTGGTCAACCTACTATGAAGGATATATTACATCTTTACAATTTTGCACAGTTAGGGCCTGACACAAAAGTGTTTGGCATTATTGGAAAGCCTGTCAGCCACAGCAAATCACCTTTTCTGTACAATGAAGGATTCAAGTCAGTAGGTTTCAATGGAGTTTATGTACATTTGTTGGTAGATGACATTGCAAAGTTTCTCCAGACTTACTCTTCAATGGATTTTGCTGGATTCAGCATTACAATTCCCCACAAGGAAGCTGCACTTAAGTGCTGTGATGAAGTTGATCCAGTTGCAAAGTCAATAGGAGCTATTAATTGCATTATAAGGAGACCAACTGACGGGAAGTTATTTGGGTTCAATACGGACTATGTTGGGGCTATTTCTGCTATTGAGGATGGACTGACAGGTTCACATAAAAGTGGCAGTATAACTGGTTCACCTTTAGCTGGTAGGCTGTTTGTTGTTATTGGTGCTGGAGGTGCTGGCAAGGCGCTTGCTTATGGTGCAAAACAGAAGGGAGCAAGGATTGCAATTGCTAACCGCACTTATGATCGAGCCAGAGAACTTGCAGACACAATTGGAGGAGATGCTTTGTCTCTTGCTGATTTAGATAATTTCCACCCAGAGGAGGGCATGATTCTTGCTAACACAACATCTATTGGAATGCAACCAAAGGTTGATGAGACACCCATTTCTAAGCACGCTCTGAGATCTTACTCGTTGGTTTTTGATGCTGTTTACACCCCCAAAATGACCAGACTCTTGAAGGATGCTGAAGCGTCAGGGGCCATAGTTGTTAGTGGGTTGGAAATGTTCATTGGACAGGCATATGAACAGTTTGAGAGGTTCACTGGGTTGCCTGCCCCAAAGGAACTCTTTCGGAAAGTAATGGACAATAGCTCCTGA

Protein Analysis

536

Amino Acids

57.81

Weight (kDa)

6.09

Isoelectric Point (pI)

24.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1025
Acc16I TGCGCA 1 cut(s) 646
AciI CCGC 1 cut(s) 1243
AclWI GGATC 2 cut(s) 189, 980
AcsI RAATTY 2 cut(s) 380, 650
AcuI CTGAAG 2 cut(s) 350, 1497
AfaI GTAC 3 cut(s) 676, 824, 867
AfiI CCNNNNNNNGG 7 cut(s) 49, 599, 1040, 1148, 1327, 1330, 1331
AflII CTTAAG 1 cut(s) 965
AjnI CCWGG 1 cut(s) 703
AjuI GAANNNNNNNTTGG 2 cut(s) 1503, 1535
AleI CACNNNNGTG 2 cut(s) 770, 967
AluBI AGCT 9 cut(s) 337, 344, 364, 509, 701, 959, 1010, 1148, 1602
AluI AGCT 9 cut(s) 337, 344, 364, 509, 701, 959, 1010, 1148, 1602
Alw21I GWGCWC 1 cut(s) 94
Alw26I GTCTC 4 cut(s) 436, 1024, 1302, 1379
AlwI GGATC 2 cut(s) 189, 980
AlwNI CAGNNNCTG 1 cut(s) 704
Ama87I CYCGRG 1 cut(s) 685
AoxI GGCC 4 cut(s) 40, 192, 758, 1488
ApeKI GCWGC 1 cut(s) 959
ApoI RAATTY 2 cut(s) 380, 650
AseI ATTAAT 1 cut(s) 1014
Asp700I GAANNNNTTC 3 cut(s) 194, 694, 1578
AspLEI GCGC 2 cut(s) 647, 1195
AspS9I GGNCC 2 cut(s) 758, 1488
AsuHPI GGTGA 4 cut(s) 305, 626, 804, 1131
AvaI CYCGRG 1 cut(s) 685
Bbv12I GWGCWC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 946
BccI CCATC 4 cut(s) 284, 325, 466, 1091
BciT130I CCWGG 1 cut(s) 705
BciVI GTATCC 1 cut(s) 630
BcoDI GTCTC 4 cut(s) 436, 1024, 1302, 1379
BfoI RGCGCY 1 cut(s) 1196
BfrI CTTAAG 1 cut(s) 965
BfuI GTATCC 1 cut(s) 630
BglII AGATCT 1 cut(s) 1412
BisI GCNGC 1 cut(s) 960
BlsI GCNGC 1 cut(s) 961
Bme1390I CCNGG 1 cut(s) 705
BmeT110I CYCGRG 1 cut(s) 685
BmgT120I GGNCC 2 cut(s) 758, 1488
BmiI GGNNCC 1 cut(s) 1489
BmrFI CCNGG 1 cut(s) 705
BmrI ACTGGG 1 cut(s) 1563
BmsI GCATC 4 cut(s) 304, 1279, 1423, 1462
BmuI ACTGGG 1 cut(s) 1563
BpmI CTGGAG 3 cut(s) 525, 884, 1197
BpuEI CTTGAG 2 cut(s) 200, 570
BsaI GGTCTC 1 cut(s) 1024
BsaJI CCNNGG 2 cut(s) 151, 537
BsaXI ACNNNNNCTCC 3 cut(s) 849, 879, 1586
Bsc4I CCNNNNNNNGG 7 cut(s) 49, 599, 1040, 1148, 1327, 1330, 1331
Bse1I ACTGG 4 cut(s) 508, 989, 1138, 1558
Bse3DI GCAATG 1 cut(s) 885
BseBI CCWGG 1 cut(s) 705
BseDI CCNNGG 2 cut(s) 151, 537
BseGI GGATG 2 cut(s) 1102, 1477
BseLI CCNNNNNNNGG 7 cut(s) 49, 599, 1040, 1148, 1327, 1330, 1331
BseMI GCAATG 1 cut(s) 885
BseMII CTCAG 1 cut(s) 1400
BseNI ACTGG 4 cut(s) 508, 989, 1138, 1558
BseRI GAGGAG 4 cut(s) 82, 85, 1299, 1343
BseXI GCAGC 1 cut(s) 946
BsgI GTGCAG 1 cut(s) 945
BshFI GGCC 4 cut(s) 42, 194, 760, 1490
BsiHKAI GWGCWC 1 cut(s) 94
BsiHKCI CYCGRG 1 cut(s) 685
BslFI GGGAC 1 cut(s) 575
BslI CCNNNNNNNGG 7 cut(s) 49, 599, 1040, 1148, 1327, 1330, 1331
BsmAI GTCTC 4 cut(s) 436, 1024, 1302, 1379
BsmFI GGGAC 1 cut(s) 575
BsmI GAATGC 2 cut(s) 580, 1371
BsnI GGCC 4 cut(s) 42, 194, 760, 1490
Bso31I GGTCTC 1 cut(s) 1024
BsoBI CYCGRG 1 cut(s) 685
Bsp1286I GDGCHC 1 cut(s) 94
Bsp1407I TGTACA 2 cut(s) 822, 865
Bsp143I GATC 6 cut(s) 181, 211, 304, 985, 1252, 1412
Bsp19I CCATGG 1 cut(s) 537
BspACI CCGC 1 cut(s) 1243
BspANI GGCC 4 cut(s) 42, 194, 760, 1490
BspCNI CTCAG 1 cut(s) 1401
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 1 cut(s) 1489
BspPI GGATC 2 cut(s) 189, 980
BspTI CTTAAG 1 cut(s) 965
BspTNI GGTCTC 1 cut(s) 1024
BsrDI GCAATG 1 cut(s) 885
BsrGI TGTACA 2 cut(s) 822, 865
BsrI ACTGG 4 cut(s) 508, 989, 1138, 1558
BssECI CCNNGG 2 cut(s) 151, 537
BssMI GATC 6 cut(s) 181, 211, 304, 985, 1252, 1412
BssT1I CCWWGG 2 cut(s) 151, 537
Bst2UI CCWGG 1 cut(s) 705
Bst4CI ACNGT 3 cut(s) 577, 753, 1539
Bst6I CTCTTC 2 cut(s) 439, 916
BstAFI CTTAAG 1 cut(s) 965
BstAPI GCANNNNNTGC 2 cut(s) 533, 1229
BstAUI TGTACA 2 cut(s) 822, 865
BstC8I GCNNGC 6 cut(s) 27, 559, 1186, 1197, 1404, 1563
BstDEI CTNAG 2 cut(s) 1398, 1409
BstDSI CCRYGG 1 cut(s) 537
BstF5I GGATG 2 cut(s) 1102, 1477
BstH2I RGCGCY 1 cut(s) 1196
BstHHI GCGC 2 cut(s) 647, 1195
BstKTI GATC 6 cut(s) 184, 214, 307, 988, 1255, 1415
BstMAI GTCTC 4 cut(s) 436, 1024, 1302, 1379
BstMBI GATC 6 cut(s) 181, 211, 304, 985, 1252, 1412
BstMWI GCNNNNNNNGC 8 cut(s) 506, 533, 1085, 1181, 1190, 1205, 1229, 1487
BstNI CCWGG 1 cut(s) 705
BstSCI CCNGG 1 cut(s) 703
BstV1I GCAGC 1 cut(s) 946
BstX2I RGATCY 1 cut(s) 1412
BstXI CCANNNNNNTGG 1 cut(s) 538
BstYI RGATCY 1 cut(s) 1412
BsuI GTATCC 1 cut(s) 630
BsuRI GGCC 4 cut(s) 42, 194, 760, 1490
BtgI CCRYGG 1 cut(s) 537
BtgZI GCGATG 1 cut(s) 344
BtsCI GGATG 2 cut(s) 1102, 1477
BtsI GCAGTG 1 cut(s) 531
BtsIMutI CAGTG 4 cut(s) 501, 531, 546, 1551
Cac8I GCNNGC 6 cut(s) 27, 559, 1186, 1197, 1404, 1563
CaiI CAGNNNCTG 1 cut(s) 704
CciI TCATGA 1 cut(s) 376
CfoI GCGC 2 cut(s) 647, 1195
Cfr13I GGNCC 2 cut(s) 758, 1488
CseI GACGC 1 cut(s) 1470
Csp6I GTAC 3 cut(s) 675, 823, 866
CviAII CATG 3 cut(s) 377, 538, 1336
CviQI GTAC 3 cut(s) 675, 823, 866
DdeI CTNAG 2 cut(s) 1398, 1409
DpnI GATC 6 cut(s) 183, 213, 306, 987, 1254, 1414
DpnII GATC 6 cut(s) 181, 211, 304, 985, 1252, 1412
DraI TTTAAA 1 cut(s) 421
Eam1104I CTCTTC 2 cut(s) 439, 916
EarI CTCTTC 2 cut(s) 439, 916
Eco130I CCWWGG 2 cut(s) 151, 537
Eco147I AGGCCT 1 cut(s) 194
Eco31I GGTCTC 1 cut(s) 1024
Eco32I GATATC 1 cut(s) 544
Eco57I CTGAAG 2 cut(s) 350, 1497
Eco88I CYCGRG 1 cut(s) 685
EcoO109I RGGNCCY 1 cut(s) 758
EcoRI GAATTC 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 703
EcoRV GATATC 1 cut(s) 544
EcoT14I CCWWGG 2 cut(s) 151, 537
ErhI CCWWGG 2 cut(s) 151, 537
FaeI CATG 3 cut(s) 380, 541, 1339
FalI AAGNNNNNCTT 6 cut(s) 294, 326, 948, 980, 1562, 1594
FaqI GGGAC 1 cut(s) 575
FatI CATG 3 cut(s) 376, 537, 1335
FauNDI CATATG 1 cut(s) 1531
Fnu4HI GCNGC 1 cut(s) 960
FokI GGATG 2 cut(s) 1109, 1484
Fsp4HI GCNGC 1 cut(s) 960
FspI TGCGCA 1 cut(s) 646
GlaI GCGC 2 cut(s) 646, 1194
GluI GCNGC 1 cut(s) 960
GsuI CTGGAG 3 cut(s) 525, 884, 1197
HaeII RGCGCY 1 cut(s) 1196
HaeIII GGCC 4 cut(s) 42, 194, 760, 1490
HgaI GACGC 1 cut(s) 1470
HhaI GCGC 2 cut(s) 647, 1195
Hin1II CATG 3 cut(s) 380, 541, 1339
Hin6I GCGC 2 cut(s) 645, 1193
HinP1I GCGC 2 cut(s) 645, 1193
HincII GTYRAC 1 cut(s) 710
HindII GTYRAC 1 cut(s) 710
HinfI GANTC 9 cut(s) 5, 107, 233, 389, 683, 834, 930, 1339, 1461
HphI GGTGA 4 cut(s) 305, 626, 804, 1131
Hpy166II GTNNAC 5 cut(s) 710, 1112, 1139, 1441, 1551
Hpy188I TCNGA 2 cut(s) 1410, 1584
Hpy188III TCNNGA 6 cut(s) 217, 377, 687, 901, 1465, 1605
Hpy8I GTNNAC 5 cut(s) 710, 1112, 1139, 1441, 1551
HpyAV CCTTC 8 cut(s) 53, 184, 205, 269, 715, 824, 1210, 1462
HpyCH4III ACNGT 3 cut(s) 577, 753, 1539
HpyF10VI GCNNNNNNNGC 8 cut(s) 506, 533, 1085, 1181, 1190, 1205, 1229, 1487
HpyF3I CTNAG 2 cut(s) 1398, 1409
Hsp92II CATG 3 cut(s) 380, 541, 1339
HspAI GCGC 2 cut(s) 645, 1193
Kzo9I GATC 6 cut(s) 181, 211, 304, 985, 1252, 1412
LmnI GCTCC 8 cut(s) 97, 334, 341, 506, 706, 1007, 1220, 1607
Lsp1109I GCAGC 1 cut(s) 946
LweI GCATC 4 cut(s) 304, 1279, 1423, 1462
MalI GATC 6 cut(s) 183, 213, 306, 987, 1254, 1414
MboI GATC 6 cut(s) 181, 211, 304, 985, 1252, 1412
MboII GAAGA 4 cut(s) 24, 426, 532, 903
MfeI CAATTG 2 cut(s) 1233, 1278
MflI RGATCY 1 cut(s) 1412
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 9 cut(s) 84, 380, 650, 742, 942, 1015, 1233, 1278, 1315
MlyI GAGTC 3 cut(s) 383, 677, 1455
MmeI TCCRAC 1 cut(s) 1488
MroXI GAANNNNTTC 3 cut(s) 194, 694, 1578
MseI TTAA 4 cut(s) 228, 420, 966, 1014
MslI CAYNNNNRTG 4 cut(s) 536, 770, 967, 1119
MspCI CTTAAG 1 cut(s) 965
MspR9I CCNGG 1 cut(s) 705
MunI CAATTG 2 cut(s) 1233, 1278
Mva1269I GAATGC 2 cut(s) 580, 1371
MvaI CCWGG 1 cut(s) 705
MwoI GCNNNNNNNGC 8 cut(s) 506, 533, 1085, 1181, 1190, 1205, 1229, 1487
NcoI CCATGG 1 cut(s) 537
NdeI CATATG 1 cut(s) 1531
NdeII GATC 6 cut(s) 181, 211, 304, 985, 1252, 1412
NlaIII CATG 3 cut(s) 380, 541, 1339
NlaIV GGNNCC 1 cut(s) 1489
NsbI TGCGCA 1 cut(s) 646
OliI CACNNNNGTG 2 cut(s) 770, 967
PagI TCATGA 1 cut(s) 376
PceI AGGCCT 1 cut(s) 194
PctI GAATGC 2 cut(s) 580, 1371
PdmI GAANNNNTTC 3 cut(s) 194, 694, 1578
PfeI GAWTC 6 cut(s) 5, 107, 233, 834, 930, 1339
PkrI GCNGC 1 cut(s) 961
PleI GAGTC 3 cut(s) 383, 677, 1455
PpsI GAGTC 3 cut(s) 383, 677, 1455
PshBI ATTAAT 1 cut(s) 1014
PsiI TTATAA 1 cut(s) 1025
Psp6I CCWGG 1 cut(s) 703
PspGI CCWGG 1 cut(s) 703
PspN4I GGNNCC 1 cut(s) 1489
PspPI GGNCC 2 cut(s) 758, 1488
PsrI GAACNNNNNNTAC 2 cut(s) 1120, 1152
PstNI CAGNNNCTG 1 cut(s) 704
PsuI RGATCY 1 cut(s) 1412
RsaI GTAC 3 cut(s) 676, 824, 867
RsaNI GTAC 3 cut(s) 675, 823, 866
RseI CAYNNNNRTG 4 cut(s) 536, 770, 967, 1119
SaqAI TTAA 4 cut(s) 228, 420, 966, 1014
SatI GCNGC 1 cut(s) 960
Sau3AI GATC 6 cut(s) 181, 211, 304, 985, 1252, 1412
Sau96I GGNCC 2 cut(s) 758, 1488
SchI GAGTC 3 cut(s) 383, 677, 1455
ScrFI CCNGG 1 cut(s) 705
SduI GDGCHC 1 cut(s) 94
SfaNI GCATC 4 cut(s) 304, 1279, 1423, 1462
SmiMI CAYNNNNRTG 4 cut(s) 536, 770, 967, 1119
SmlI CTYRAG 3 cut(s) 215, 585, 965
SmoI CTYRAG 3 cut(s) 215, 585, 965
Sse9I AATT 9 cut(s) 84, 380, 650, 742, 942, 1015, 1233, 1278, 1315
SseBI AGGCCT 1 cut(s) 194
SsiI CCGC 1 cut(s) 1243
StuI AGGCCT 1 cut(s) 194
StyD4I CCNGG 1 cut(s) 703
StyI CCWWGG 2 cut(s) 151, 537
TaaI ACNGT 3 cut(s) 577, 753, 1539
TaqI TCGA 5 cut(s) 307, 322, 360, 387, 1255
TasI AATT 9 cut(s) 84, 380, 650, 742, 942, 1015, 1233, 1278, 1315
TatI WGTACW 2 cut(s) 822, 865
TfiI GAWTC 6 cut(s) 5, 107, 233, 834, 930, 1339
Tru1I TTAA 4 cut(s) 228, 420, 966, 1014
Tru9I TTAA 4 cut(s) 228, 420, 966, 1014
TscAI CASTG 4 cut(s) 508, 538, 553, 1558
TseI GCWGC 1 cut(s) 959
TspDTI ATGAA 8 cut(s) 312, 373, 393, 734, 843, 993, 1507, 1548
TspGWI ACGGA 2 cut(s) 649, 1079
TspRI CASTG 4 cut(s) 508, 538, 553, 1558
Vha464I CTTAAG 1 cut(s) 965
VspI ATTAAT 1 cut(s) 1014
XapI RAATTY 2 cut(s) 380, 650
XmnI GAANNNNTTC 3 cut(s) 194, 694, 1578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.