Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002493

Physical Location & Seq

Genomic Coordinates Forward (+)

3746930 .. 3751117

Gene Structure 4188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g04680.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGATTCTCCCCAAAACGTTTTGCTTGCTTCTGAGGGCCTGCGCGTGGGAGTTGACGATGTGAGGAGGAGTTCGACCCTAATTTGTGCTCCGATAATGGCGGAGTCCGTTGATAAGATGGTGGTTGAAATGGGCAATGCCAAAGCCCTTGGTGCTGACCTTGTGGAGATTAGATTGGATCATTTAAAAAGCTTCAATTGCAGTGAACATCTCAAGATCCTTATTAAAGAATCCCCTTTGCCGACGCTTATCACATACAGACCAAAGTGGGAAGGTGGTCAGTATGATGGTGATGAAAAATATCGACTGGATGCGCTTCGATTAGCAATGGAGCTTGGAGCTGATTACATTGATGTTGAGCTTCAGGTTGCTCATGCATTCATTGATTCCATATACGGGAAGAAGCCTGAAAAGTTTAAAGTTATTGTCTCTTCTCACAACTATCAAGAAACTCCATCAGTTGAGGCTCTTGGAAATCTTGTTGCAAGAATACAAGCCACTGGAGCTGACATAGTTAAGATTGCAACCAGTGCTTTGGATATCACTGATGTAGCACGCATTTTTCACATAACAGTACATTCTCAATTACATCGGAAGCATGAGATGTGCCTTGGCACAAAGCTAAGTTACTCTGTTTTGAAATGGGAGACAACCTTTCCGAAAGTCCCAACAATAGGACTTGTAATGGGTGAGAGGGGGTTGATTTCACGGATCCTTTGCGCAAAATTTGGTGGTTATCTTACTTTTGGTACGCTTGACTCGGGAATAGTTTCAGCTCCTGGTCAACCAACTATGAAGGATATATTACATCTATACAATTTCAGGCAGATAGGGACTGACACAAAAGTGTTTGGCATTATTGGGAAGCCTGTCAGCCACAGCAAATCACCTATATTGTACAATAAAGCATTCAAGTCAGTAGGTTTCAATGGAGTTTATGTACATTTGTTGGTAGATGACATTGCAAATTTTCTCCGTACTTACTCTTCAGTGGATTTTGCTGGTTTCAGCGTTACAATTCCGCACAAGGAAGCTGCACTTAAGTGTTGTGATGAAGTTGATCCAGTTGCAAAGGCCATAGGAGCTATTAATTGCATTATACGGAGACCAACTGATGGGAAGTTATTTGGGTTCAACACGGACTATGTAGGGGCTATCTCAGCTATTGAAGACGGACTGAAAGGTTCACATAATAATGGCAGTTTAACTGTTTCACCTTTAGCTGGTAGGCTGTTTGTTGTTATTGGGGCTGGAGGTGCTGGAAAGGCACTTGCTTATGGTGCAAAACAGAAGGGTGCAAGGATTGCAATTGCCAATCGCACTTATGGTTGGTTTTACTTTCTTTTGTTCCGTCTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004764 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0019632 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

DHquinase_I Shikimate_DH Shikimate_dh_N

Protein Analysis

454

Amino Acids

49.43

Weight (kDa)

8.75

Isoelectric Point (pI)

26.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06350
fragaria_vesca	FvH4_1g23213 FvH4_1g23213 FvH4_1g23213 FvH4_1g23232 FvH4_1g23232 FvH4_1g23232
malus_domestica	MD00G1130500.v1.1 MD15G1335600.v1.1
prunus_persica	Prupe.6G166100_v2.0.a1 Prupe.6G166100_v2.0.a1 Prupe.6G166100_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1
pyrus_communis	pycom01g04680 pycom01g04700 pycom15g28990
rosa_chinensis	RchiOBHm_Chr2g0117991 RchiOBHm_Chr2g0118061
rosa_laevigata	RLG00000018384 RLG00000018389 RLG00000018397
rosa_multiflora	Rmu_sc0000948.1_g000018 Rmu_sc0000948.1_g000032
rosa_roxburghii	Rroxscaffold_2G00125870 Rroxscaffold_2G00126000 Rroxscaffold_2G00126080 Rroxscaffold_5G00352100
rosa_rugosa	Rorug02G0215100 Rorug02G0215200 Rorug02G0215500.1 Rorug02G0217000
rosa_samantha	Rh2BG283700 Rh2DG280600 Rh2DG298000 Rh2DG298700
rosa_wichuraiana	Rw2G021480 Rw2G021530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1360
Acc16I	TGCGCA	1 cut(s)	721
AccB7I	CCANNNNNTGG	1 cut(s)	1115
AccII	CGCG	1 cut(s)	45
AciI	CCGC	2 cut(s)	101, 1022
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	5 cut(s)	186, 211, 706, 719, 1055
AcsI	RAATTY	2 cut(s)	725, 967
AcuI	CTGAAG	2 cut(s)	347, 972
AfaI	GTAC	5 cut(s)	576, 751, 899, 942, 979
AfiI	CCNNNNNNNGG	5 cut(s)	46, 396, 674, 1115, 1223
AflII	CTTAAG	1 cut(s)	1040
AgsI	TTSAA	7 cut(s)	128, 196, 640, 913, 928, 1135, 1169
AjnI	CCWGG	1 cut(s)	778
AleI	CACNNNNGTG	2 cut(s)	845, 1042
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	3 cut(s)	433, 641, 1099
AlwI	GGATC	5 cut(s)	186, 211, 706, 719, 1055
AlwNI	CAGNNNCTG	1 cut(s)	779
Ama87I	CYCGRG	1 cut(s)	760
AoxI	GGCC	2 cut(s)	37, 1074
ApeKI	GCWGC	1 cut(s)	1034
ApoI	RAATTY	2 cut(s)	725, 967
AseI	ATTAAT	1 cut(s)	1089
Asp700I	GAANNNNTTC	1 cut(s)	769
AspLEI	GCGC	3 cut(s)	45, 316, 722
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	4 cut(s)	302, 701, 879, 1206
AvaI	CYCGRG	1 cut(s)	760
BamHI	GGATCC	1 cut(s)	711
BarI	GAAGNNNNNNTAC	2 cut(s)	970, 1002
BbsI	GAAGAC	1 cut(s)	1176
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	1021
BccI	CCATC	4 cut(s)	112, 281, 463, 1109
BciT130I	CCWGG	1 cut(s)	780
BcoDI	GTCTC	3 cut(s)	433, 641, 1099
BfrI	CTTAAG	1 cut(s)	1040
BisI	GCNGC	1 cut(s)	1035
BlsI	GCNGC	1 cut(s)	1036
Bme1390I	CCNGG	1 cut(s)	780
BmeT110I	CYCGRG	1 cut(s)	760
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	713
BmrFI	CCNGG	1 cut(s)	780
BmsI	GCATC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	1176
BpmI	CTGGAG	2 cut(s)	522, 1272
BpuEI	CTTGAG	1 cut(s)	197
BsaI	GGTCTC	1 cut(s)	1099
BsaJI	CCNNGG	2 cut(s)	148, 610
BsaXI	ACNNNNNCTCC	2 cut(s)	924, 954
Bsc4I	CCNNNNNNNGG	5 cut(s)	46, 396, 674, 1115, 1223
Bse1I	ACTGG	4 cut(s)	312, 505, 528, 1064
Bse3DI	GCAATG	3 cut(s)	142, 333, 960
BseBI	CCWGG	1 cut(s)	780
BseDI	CCNNGG	2 cut(s)	148, 610
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	5 cut(s)	46, 396, 674, 1115, 1223
BseMI	GCAATG	3 cut(s)	142, 333, 960
BseMII	CTCAG	2 cut(s)	24, 1173
BseNI	ACTGG	4 cut(s)	312, 505, 528, 1064
BseRI	GAGGAG	2 cut(s)	79, 82
BseXI	GCAGC	1 cut(s)	1021
BsgI	GTGCAG	1 cut(s)	1020
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	2 cut(s)	39, 1076
BsiHKAI	GWGCWC	1 cut(s)	91
BsiHKCI	CYCGRG	1 cut(s)	760
BslFI	GGGAC	2 cut(s)	650, 847
BslI	CCNNNNNNNGG	5 cut(s)	46, 396, 674, 1115, 1223
BsmAI	GTCTC	3 cut(s)	433, 641, 1099
BsmFI	GGGAC	2 cut(s)	650, 847
BsmI	GAATGC	2 cut(s)	377, 908
BsnI	GGCC	2 cut(s)	39, 1076
Bso31I	GGTCTC	1 cut(s)	1099
BsoBI	CYCGRG	1 cut(s)	760
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp1407I	TGTACA	2 cut(s)	897, 940
Bsp143I	GATC	4 cut(s)	178, 216, 711, 1060
BspACI	CCGC	2 cut(s)	101, 1022
BspANI	GGCC	2 cut(s)	39, 1076
BspCNI	CTCAG	2 cut(s)	25, 1172
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	713
BspPI	GGATC	5 cut(s)	186, 211, 706, 719, 1055
BspTI	CTTAAG	1 cut(s)	1040
BspTNI	GGTCTC	1 cut(s)	1099
BsrDI	GCAATG	3 cut(s)	142, 333, 960
BsrGI	TGTACA	2 cut(s)	897, 940
BsrI	ACTGG	4 cut(s)	312, 505, 528, 1064
BssECI	CCNNGG	2 cut(s)	148, 610
BssMI	GATC	4 cut(s)	178, 216, 711, 1060
BssT1I	CCWWGG	2 cut(s)	148, 610
Bst2UI	CCWGG	1 cut(s)	780
Bst4CI	ACNGT	2 cut(s)	574, 1210
Bst6I	CTCTTC	2 cut(s)	436, 991
BstAFI	CTTAAG	1 cut(s)	1040
BstAPI	GCANNNNNTGC	2 cut(s)	530, 1304
BstAUI	TGTACA	2 cut(s)	897, 940
BstC8I	GCNNGC	3 cut(s)	27, 41, 556
BstDEI	CTNAG	3 cut(s)	33, 623, 1159
BstF5I	GGATG	1 cut(s)	316
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	3 cut(s)	45, 316, 722
BstKTI	GATC	4 cut(s)	181, 219, 714, 1063
BstMAI	GTCTC	3 cut(s)	433, 641, 1099
BstMBI	GATC	4 cut(s)	178, 216, 711, 1060
BstNI	CCWGG	1 cut(s)	780
BstSCI	CCNGG	1 cut(s)	778
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	1021
BstV2I	GAAGAC	1 cut(s)	1176
BstX2I	RGATCY	2 cut(s)	216, 711
BstXI	CCANNNNNNTGG	1 cut(s)	535
BstYI	RGATCY	2 cut(s)	216, 711
BsuRI	GGCC	2 cut(s)	39, 1076
BtsCI	GGATG	1 cut(s)	316
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	5 cut(s)	208, 498, 535, 543, 996
Cac8I	GCNNGC	3 cut(s)	27, 41, 556
CaiI	CAGNNNCTG	1 cut(s)	779
CfoI	GCGC	3 cut(s)	45, 316, 722
Cfr13I	GGNCC	1 cut(s)	37
CseI	GACGC	1 cut(s)	253
Csp6I	GTAC	5 cut(s)	575, 750, 898, 941, 978
CviAII	CATG	2 cut(s)	374, 599
CviQI	GTAC	5 cut(s)	575, 750, 898, 941, 978
DdeI	CTNAG	3 cut(s)	33, 623, 1159
DpnI	GATC	4 cut(s)	180, 218, 713, 1062
DpnII	GATC	4 cut(s)	178, 216, 711, 1060
DraI	TTTAAA	2 cut(s)	186, 418
Eam1104I	CTCTTC	2 cut(s)	436, 991
EarI	CTCTTC	2 cut(s)	436, 991
EciI	GGCGGA	1 cut(s)	116
Eco130I	CCWWGG	2 cut(s)	148, 610
Eco31I	GGTCTC	1 cut(s)	1099
Eco32I	GATATC	1 cut(s)	541
Eco57I	CTGAAG	2 cut(s)	347, 972
Eco88I	CYCGRG	1 cut(s)	760
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	778
EcoRV	GATATC	1 cut(s)	541
EcoT14I	CCWWGG	2 cut(s)	148, 610
EcoT22I	ATGCAT	1 cut(s)	379
ErhI	CCWWGG	2 cut(s)	148, 610
FaeI	CATG	2 cut(s)	377, 602
FalI	AAGNNNNNCTT	2 cut(s)	1023, 1055
FaqI	GGGAC	2 cut(s)	650, 847
FatI	CATG	2 cut(s)	373, 598
Fnu4HI	GCNGC	1 cut(s)	1035
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	1035
FspI	TGCGCA	1 cut(s)	721
GlaI	GCGC	3 cut(s)	44, 315, 721
GluI	GCNGC	1 cut(s)	1035
GsuI	CTGGAG	2 cut(s)	522, 1272
HaeIII	GGCC	2 cut(s)	39, 1076
HgaI	GACGC	1 cut(s)	253
HhaI	GCGC	3 cut(s)	45, 316, 722
Hin1II	CATG	2 cut(s)	377, 602
Hin6I	GCGC	3 cut(s)	43, 314, 720
HinP1I	GCGC	3 cut(s)	43, 314, 720
HincII	GTYRAC	2 cut(s)	55, 785
HindII	GTYRAC	2 cut(s)	55, 785
HindIII	AAGCTT	1 cut(s)	190
HinfI	GANTC	5 cut(s)	5, 104, 230, 386, 758
HphI	GGTGA	4 cut(s)	302, 701, 879, 1206
Hpy166II	GTNNAC	4 cut(s)	55, 206, 785, 1187
Hpy188I	TCNGA	4 cut(s)	34, 93, 594, 660
Hpy188III	TCNNGA	3 cut(s)	214, 446, 762
Hpy8I	GTNNAC	4 cut(s)	55, 206, 785, 1187
Hpy99I	CGWCG	1 cut(s)	247
HpyAV	CCTTC	3 cut(s)	266, 790, 1285
HpyCH4III	ACNGT	2 cut(s)	574, 1210
HpyCH4IV	ACGT	1 cut(s)	18
HpyF3I	CTNAG	3 cut(s)	33, 623, 1159
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	377, 602
HspAI	GCGC	3 cut(s)	43, 314, 720
Kzo9I	GATC	4 cut(s)	178, 216, 711, 1060
LmnI	GCTCC	6 cut(s)	94, 331, 338, 503, 781, 1082
Lsp1109I	GCAGC	1 cut(s)	1021
LweI	GCATC	1 cut(s)	301
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	626, 1012
MalI	GATC	4 cut(s)	180, 218, 713, 1062
MboI	GATC	4 cut(s)	178, 216, 711, 1060
MboII	GAAGA	4 cut(s)	412, 423, 978, 1181
MfeI	CAATTG	2 cut(s)	196, 1308
MflI	RGATCY	2 cut(s)	216, 711
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	9 cut(s)	81, 196, 584, 725, 817, 967, 1017, 1090, 1308
MlyI	GAGTC	2 cut(s)	113, 752
MnlI	CCTC	6 cut(s)	28, 57, 60, 457, 687, 1247
Mph1103I	ATGCAT	1 cut(s)	379
MroXI	GAANNNNTTC	1 cut(s)	769
MseI	TTAA	7 cut(s)	185, 225, 417, 516, 1041, 1089, 1205
MslI	CAYNNNNRTG	3 cut(s)	845, 1042, 1194
MspCI	CTTAAG	1 cut(s)	1040
MspR9I	CCNGG	1 cut(s)	780
MunI	CAATTG	2 cut(s)	196, 1308
Mva1269I	GAATGC	2 cut(s)	377, 908
MvaI	CCWGG	1 cut(s)	780
MvnI	CGCG	1 cut(s)	45
NdeII	GATC	4 cut(s)	178, 216, 711, 1060
NlaIII	CATG	2 cut(s)	377, 602
NlaIV	GGNNCC	1 cut(s)	713
NsbI	TGCGCA	1 cut(s)	721
NsiI	ATGCAT	1 cut(s)	379
OliI	CACNNNNGTG	2 cut(s)	845, 1042
PctI	GAATGC	2 cut(s)	377, 908
PdmI	GAANNNNTTC	1 cut(s)	769
PfeI	GAWTC	3 cut(s)	5, 230, 386
PflMI	CCANNNNNTGG	1 cut(s)	1115
PkrI	GCNGC	1 cut(s)	1036
PleI	GAGTC	2 cut(s)	112, 752
PpsI	GAGTC	2 cut(s)	112, 752
PshBI	ATTAAT	1 cut(s)	1089
PsiI	TTATAA	1 cut(s)	1360
Psp1406I	AACGTT	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	778
PspGI	CCWGG	1 cut(s)	778
PspN4I	GGNNCC	1 cut(s)	713
PspPI	GGNCC	1 cut(s)	37
PstNI	CAGNNNCTG	1 cut(s)	779
PsuI	RGATCY	2 cut(s)	216, 711
RsaI	GTAC	5 cut(s)	576, 751, 899, 942, 979
RsaNI	GTAC	5 cut(s)	575, 750, 898, 941, 978
RseI	CAYNNNNRTG	3 cut(s)	845, 1042, 1194
SaqAI	TTAA	7 cut(s)	185, 225, 417, 516, 1041, 1089, 1205
SatI	GCNGC	1 cut(s)	1035
Sau3AI	GATC	4 cut(s)	178, 216, 711, 1060
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	2 cut(s)	113, 752
ScrFI	CCNGG	1 cut(s)	780
SduI	GDGCHC	1 cut(s)	91
SfaNI	GCATC	1 cut(s)	301
SmiMI	CAYNNNNRTG	3 cut(s)	845, 1042, 1194
SmlI	CTYRAG	2 cut(s)	212, 1040
SmoI	CTYRAG	2 cut(s)	212, 1040
Sse9I	AATT	9 cut(s)	81, 196, 584, 725, 817, 967, 1017, 1090, 1308
SsiI	CCGC	2 cut(s)	101, 1022
StyD4I	CCNGG	1 cut(s)	778
StyI	CCWWGG	2 cut(s)	148, 610
TaaI	ACNGT	2 cut(s)	574, 1210
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	3 cut(s)	74, 304, 319
TasI	AATT	9 cut(s)	81, 196, 584, 725, 817, 967, 1017, 1090, 1308
TatI	WGTACW	3 cut(s)	574, 897, 940
TfiI	GAWTC	3 cut(s)	5, 230, 386
Tru1I	TTAA	7 cut(s)	185, 225, 417, 516, 1041, 1089, 1205
Tru9I	TTAA	7 cut(s)	185, 225, 417, 516, 1041, 1089, 1205
TscAI	CASTG	5 cut(s)	208, 505, 535, 550, 996
TseI	GCWGC	1 cut(s)	1034
TspDTI	ATGAA	4 cut(s)	309, 370, 809, 1068
TspGWI	ACGGA	7 cut(s)	97, 724, 965, 1117, 1154, 1188, 1340
TspRI	CASTG	5 cut(s)	208, 505, 535, 550, 996
Van91I	CCANNNNNTGG	1 cut(s)	1115
Vha464I	CTTAAG	1 cut(s)	1040
VspI	ATTAAT	1 cut(s)	1089
XapI	RAATTY	2 cut(s)	725, 967
XmnI	GAANNNNTTC	1 cut(s)	769
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.