Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002493

Physical Location & Seq

Genomic Coordinates Forward (+)

3799686 .. 3801840

Gene Structure 2155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g04700.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGAGCTCGGAGCTGATTACATTGATGTCGAGCTTCAGGTTGCTCGTGAATTCATCAACTCTATAAATGGAAAGAAGCCAGAAAAGTTTAAAGTTATTGTTTCTTCTCACAACTTTCAAGATACCCCATCTGTGGAGGCTCTTGGCAATCTTGTAGCAAGAATACAAGCTACTGGAGCTGACATAGTGAAGATTGCAACCACTTCCTTAGATATAACAGATGTAGCACGCACTTTTCAAATAACCGTTCATTCTCAAGTTCCGTTGATAGGACTTGTACTGGGTGAGAGGGGTTTGATTTCACGGATACTTTCTGCAAAATTTTGGGGTTATCTTACTTATGGTACGTTGGAGTCGGGAATAGTTTCTGCTCCTACTCAACCTACAATCAAGGATCTATTACATTTATACAATTTCAGACAGATAGGACCTGACACAAAAGTGTTTGGCGTCATTAGCAAACCTGTCAGTCACAGCAAATCACCAAAGTTGTACAATGAAGTATTCAAGTCAATCGGTTTCAACGGTGTTTATGCACATTTGTTGGTAGACGATATTGAAATTTTTTTCCAGACATACTCATGCGTGGATTTTGCTGGATTCAGCGTTGGTATTCCTCACAAGGAAGCCGCCCTGAAGTGCTGTGATGAGGTTGATCCAGTTGCAAAGTCAATTGGAGCTATAAACTGCATTATAAGGAGACCAGCTGATGGGAAGTTATATGGATTCAATACGGACTATGTTGGTGCTATTTCTGCCATTGAGGAAGGACTGAAAGGTTCACATAATGGTGGCAGTGTAACTGGTTCACCTTTAGCTGGAAGGCTGTTTGTTGTCATTGGTGCTGGTGGTGCGAGCAAGGCACTTGCTTATGGTGCAAAGCAGAAGGGAGCAAGGATTCTAATTGCCAATCGCACATATGATCGAGCCAGAGAACTTGCAGACACCGTCGGTGGTGACGCATTATCTCTTGCTCGATCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004764 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0019632 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

DHquinase_I Shikimate_DH Shikimate_dh_N

Protein Analysis

329

Amino Acids

35.15

Weight (kDa)

8.23

Isoelectric Point (pI)

17.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06350
fragaria_vesca	FvH4_1g23213 FvH4_1g23213 FvH4_1g23213 FvH4_1g23232 FvH4_1g23232 FvH4_1g23232
malus_domestica	MD00G1130500.v1.1 MD15G1335600.v1.1
prunus_persica	Prupe.6G166100_v2.0.a1 Prupe.6G166100_v2.0.a1 Prupe.6G166100_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1
pyrus_communis	pycom01g04680 pycom01g04700 pycom15g28990
rosa_chinensis	RchiOBHm_Chr2g0117991 RchiOBHm_Chr2g0118061
rosa_laevigata	RLG00000018384 RLG00000018389 RLG00000018397
rosa_multiflora	Rmu_sc0000948.1_g000018 Rmu_sc0000948.1_g000032
rosa_roxburghii	Rroxscaffold_2G00125870 Rroxscaffold_2G00126000 Rroxscaffold_2G00126080 Rroxscaffold_5G00352100
rosa_rugosa	Rorug02G0215100 Rorug02G0215200 Rorug02G0215500.1 Rorug02G0217000
rosa_samantha	Rh2BG283700 Rh2DG280600 Rh2DG298000 Rh2DG298700
rosa_wichuraiana	Rw2G021480 Rw2G021530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	695
AccB7I	CCANNNNNTGG	1 cut(s)	710
AccI	GTMKAC	1 cut(s)	549
AciI	CCGC	1 cut(s)	630
AclWI	GGATC	2 cut(s)	402, 650
AcsI	RAATTY	3 cut(s)	50, 320, 561
AcuI	CTGAAG	2 cut(s)	20, 656
AcyI	GRCGYC	1 cut(s)	450
AfaI	GTAC	3 cut(s)	279, 346, 494
AfiI	CCNNNNNNNGG	4 cut(s)	133, 269, 710, 818
AgsI	TTSAA	6 cut(s)	119, 239, 508, 523, 560, 730
AleI	CACNNNNGTG	1 cut(s)	440
AluBI	AGCT	8 cut(s)	7, 14, 34, 170, 179, 680, 707, 818
AluI	AGCT	8 cut(s)	7, 14, 34, 170, 179, 680, 707, 818
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	694
AlwI	GGATC	2 cut(s)	402, 650
ApoI	RAATTY	3 cut(s)	50, 320, 561
Asp700I	GAANNNNTTC	1 cut(s)	364
AspS9I	GGNCC	1 cut(s)	428
AsuHPI	GGTGA	4 cut(s)	296, 474, 801, 968
AvaII	GGWCC	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	9
BauI	CACGAG	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	9
BccI	CCATC	2 cut(s)	136, 704
BciVI	GTATCC	1 cut(s)	300
BcoDI	GTCTC	1 cut(s)	694
BfuI	GTATCC	1 cut(s)	300
BisI	GCNGC	1 cut(s)	630
BlsI	GCNGC	1 cut(s)	631
Bme18I	GGWCC	1 cut(s)	428
BmgT120I	GGNCC	1 cut(s)	428
BmrI	ACTGGG	1 cut(s)	290
BmuI	ACTGGG	1 cut(s)	290
BpmI	CTGGAG	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	450
BsaI	GGTCTC	1 cut(s)	694
Bsc4I	CCNNNNNNNGG	4 cut(s)	133, 269, 710, 818
Bse1I	ACTGG	4 cut(s)	178, 285, 659, 808
BseLI	CCNNNNNNNGG	4 cut(s)	133, 269, 710, 818
BseNI	ACTGG	4 cut(s)	178, 285, 659, 808
BsiHKAI	GWGCWC	1 cut(s)	9
BslI	CCNNNNNNNGG	4 cut(s)	133, 269, 710, 818
BsmAI	GTCTC	1 cut(s)	694
Bso31I	GGTCTC	1 cut(s)	694
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp1407I	TGTACA	1 cut(s)	492
Bsp143I	GATC	4 cut(s)	394, 655, 922, 977
BspACI	CCGC	1 cut(s)	630
BspPI	GGATC	2 cut(s)	402, 650
BspTNI	GGTCTC	1 cut(s)	694
BsrGI	TGTACA	1 cut(s)	492
BsrI	ACTGG	4 cut(s)	178, 285, 659, 808
BssMI	GATC	4 cut(s)	394, 655, 922, 977
BssNI	GRCGYC	1 cut(s)	450
BssSI	CACGAG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	45
Bst4CI	ACNGT	3 cut(s)	247, 527, 949
BstACI	GRCGYC	1 cut(s)	450
BstAUI	TGTACA	1 cut(s)	492
BstC8I	GCNNGC	2 cut(s)	229, 856
BstDEI	CTNAG	1 cut(s)	208
BstKTI	GATC	4 cut(s)	397, 658, 925, 980
BstMAI	GTCTC	1 cut(s)	694
BstMBI	GATC	4 cut(s)	394, 655, 922, 977
BstMWI	GCNNNNNNNGC	6 cut(s)	176, 456, 755, 851, 860, 875
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
BsuI	GTATCC	1 cut(s)	300
BtsI	GCAGTG	1 cut(s)	802
BtsIMutI	CAGTG	1 cut(s)	802
Cac8I	GCNNGC	2 cut(s)	229, 856
Cfr13I	GGNCC	1 cut(s)	428
CseI	GACGC	2 cut(s)	439, 968
Csp6I	GTAC	3 cut(s)	278, 345, 493
CviAII	CATG	1 cut(s)	582
CviQI	GTAC	3 cut(s)	278, 345, 493
DdeI	CTNAG	1 cut(s)	208
DpnI	GATC	4 cut(s)	396, 657, 924, 979
DpnII	GATC	4 cut(s)	394, 655, 922, 977
DraI	TTTAAA	1 cut(s)	91
Ecl136II	GAGCTC	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	694
Eco47I	GGWCC	1 cut(s)	428
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	2 cut(s)	20, 656
EcoICRI	GAGCTC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	428
EcoRI	GAATTC	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	1 cut(s)	585
FatI	CATG	1 cut(s)	581
FauNDI	CATATG	1 cut(s)	919
FblI	GTMKAC	1 cut(s)	549
Fnu4HI	GCNGC	1 cut(s)	630
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	630
GluI	GCNGC	1 cut(s)	630
GsuI	CTGGAG	1 cut(s)	195
HgaI	GACGC	2 cut(s)	439, 968
Hin1I	GRCGYC	1 cut(s)	450
Hin1II	CATG	1 cut(s)	585
HinfI	GANTC	4 cut(s)	353, 600, 726, 898
HphI	GGTGA	4 cut(s)	296, 474, 801, 968
Hpy166II	GTNNAC	3 cut(s)	550, 782, 809
Hpy188I	TCNGA	2 cut(s)	11, 419
Hpy188III	TCNNGA	4 cut(s)	47, 119, 357, 571
Hpy8I	GTNNAC	3 cut(s)	550, 782, 809
Hpy99I	CGWCG	1 cut(s)	953
HpyAV	CCTTC	3 cut(s)	761, 816, 880
HpyCH4III	ACNGT	3 cut(s)	247, 527, 949
HpyCH4IV	ACGT	1 cut(s)	347
HpyCH4V	TGCA	7 cut(s)	197, 317, 536, 665, 690, 878, 941
HpyF10VI	GCNNNNNNNGC	6 cut(s)	176, 456, 755, 851, 860, 875
HpyF3I	CTNAG	1 cut(s)	208
HpySE526I	ACGT	1 cut(s)	347
Hsp92I	GRCGYC	1 cut(s)	450
Hsp92II	CATG	1 cut(s)	585
Kzo9I	GATC	4 cut(s)	394, 655, 922, 977
LmnI	GCTCC	6 cut(s)	4, 11, 176, 376, 677, 890
MaeII	ACGT	1 cut(s)	347
MaeIII	GTNAC	3 cut(s)	470, 799, 956
MalI	GATC	4 cut(s)	396, 657, 924, 979
MboI	GATC	4 cut(s)	394, 655, 922, 977
MboII	GAAGA	2 cut(s)	96, 202
MfeI	CAATTG	1 cut(s)	672
MflI	RGATCY	1 cut(s)	394
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	6 cut(s)	50, 320, 412, 561, 672, 903
MlyI	GAGTC	1 cut(s)	362
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	5 cut(s)	130, 282, 627, 643, 757
MroXI	GAANNNNTTC	1 cut(s)	364
MseI	TTAA	1 cut(s)	90
MslI	CAYNNNNRTG	3 cut(s)	440, 580, 789
MspA1I	CMGCKG	1 cut(s)	707
MunI	CAATTG	1 cut(s)	672
MwoI	GCNNNNNNNGC	6 cut(s)	176, 456, 755, 851, 860, 875
NdeI	CATATG	1 cut(s)	919
NdeII	GATC	4 cut(s)	394, 655, 922, 977
NlaIII	CATG	1 cut(s)	585
NmuCI	GTSAC	2 cut(s)	470, 956
OliI	CACNNNNGTG	1 cut(s)	440
PdmI	GAANNNNTTC	1 cut(s)	364
PfeI	GAWTC	3 cut(s)	600, 726, 898
PflFI	GACNNNGTC	1 cut(s)	947
PflMI	CCANNNNNTGG	1 cut(s)	710
PkrI	GCNGC	1 cut(s)	631
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
PpuMI	RGGWCCY	1 cut(s)	428
PsiI	TTATAA	1 cut(s)	695
Psp124BI	GAGCTC	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	428
PspPI	GGNCC	1 cut(s)	428
PspPPI	RGGWCCY	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	394
PsyI	GACNNNGTC	1 cut(s)	947
PvuII	CAGCTG	1 cut(s)	707
RsaI	GTAC	3 cut(s)	279, 346, 494
RsaNI	GTAC	3 cut(s)	278, 345, 493
RseI	CAYNNNNRTG	3 cut(s)	440, 580, 789
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	1 cut(s)	630
Sau3AI	GATC	4 cut(s)	394, 655, 922, 977
Sau96I	GGNCC	1 cut(s)	428
SchI	GAGTC	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	9
SinI	GGWCC	1 cut(s)	428
SmiMI	CAYNNNNRTG	3 cut(s)	440, 580, 789
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
Sse9I	AATT	6 cut(s)	50, 320, 412, 561, 672, 903
SsiI	CCGC	1 cut(s)	630
SstI	GAGCTC	1 cut(s)	9
TaaI	ACNGT	3 cut(s)	247, 527, 949
TaiI	ACGT	1 cut(s)	350
TaqI	TCGA	3 cut(s)	30, 925, 976
TasI	AATT	6 cut(s)	50, 320, 412, 561, 672, 903
TatI	WGTACW	2 cut(s)	277, 492
TauI	GCSGC	1 cut(s)	632
TfiI	GAWTC	3 cut(s)	600, 726, 898
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	1 cut(s)	802
TseFI	GTSAC	2 cut(s)	470, 956
Tsp45I	GTSAC	2 cut(s)	470, 956
TspDTI	ATGAA	3 cut(s)	43, 239, 513
TspGWI	ACGGA	3 cut(s)	252, 319, 749
TspRI	CASTG	1 cut(s)	802
Tth111I	GACNNNGTC	1 cut(s)	947
Van91I	CCANNNNNTGG	1 cut(s)	710
VpaK11BI	GGWCC	1 cut(s)	428
XapI	RAATTY	3 cut(s)	50, 320, 561
XmiI	GTMKAC	1 cut(s)	549
XmnI	GAANNNNTTC	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.