Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002493

Physical Location & Seq

Genomic Coordinates Reverse (-)

20831645 .. 20832832

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0217000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTTCCTTCAAACAGTGGGATATAGTAATTTTGGCCCTCTAGCTGATCAAGTCAAGGATGGCTCCAGGAATTTCCATCAACAAAGTCAGCAGCAAATTCATGGAATGCAGTCACAGTTGCAGCCACAGCACCAGAACCCTATTCGACTACCCCAACAAATATCGAGACAAATGCATCCACAGATGCAGCAAATTGCCCAATCCAAGAATGTGCCGCTTCAGCAACAGCAGCAGATAGAAAGAATGCGCAGATGTCAACCATCTACTCCTCGTGCTGGTATGGACATGGTACAGGACAGACCAATGGTCCAGGTTAAGATTGAAGCTCCATCAGAGTTACCCATGGATGGTAATGCCTTCAACAGTTTCAACAACAGACATCCACAATTGCAGTTCAGGCAGCAGCAAATTCCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004764 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0019632 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0071704 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

DHquinase_I Shikimate_DH Shikimate_dh_N

Protein Analysis

139

Amino Acids

16.15

Weight (kDa)

10.37

Isoelectric Point (pI)

79.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002493)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06350
fragaria_vesca	FvH4_1g23213 FvH4_1g23213 FvH4_1g23213 FvH4_1g23232 FvH4_1g23232 FvH4_1g23232
malus_domestica	MD00G1130500.v1.1 MD15G1335600.v1.1
prunus_persica	Prupe.6G166100_v2.0.a1 Prupe.6G166100_v2.0.a1 Prupe.6G166100_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1 Prupe.6G166200_v2.0.a1
pyrus_communis	pycom01g04680 pycom01g04700 pycom15g28990
rosa_chinensis	RchiOBHm_Chr2g0117991 RchiOBHm_Chr2g0118061
rosa_laevigata	RLG00000018384 RLG00000018389 RLG00000018397
rosa_multiflora	Rmu_sc0000948.1_g000018 Rmu_sc0000948.1_g000032
rosa_roxburghii	Rroxscaffold_2G00125870 Rroxscaffold_2G00126000 Rroxscaffold_2G00126080 Rroxscaffold_5G00352100
rosa_rugosa	Rorug02G0215100 Rorug02G0215200 Rorug02G0215500.1 Rorug02G0217000
rosa_samantha	Rh2BG283700 Rh2DG280600 Rh2DG298000 Rh2DG298700
rosa_wichuraiana	Rw2G021480 Rw2G021530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	248
AciI	CCGC	1 cut(s)	215
AcsI	RAATTY	3 cut(s)	70, 96, 408
AcuI	CTGAAG	1 cut(s)	203
AfaI	GTAC	1 cut(s)	291
AfiI	CCNNNNNNNGG	2 cut(s)	275, 347
AgsI	TTSAA	4 cut(s)	11, 323, 361, 370
AhdI	GACNNNNNGTC	1 cut(s)	305
AjnI	CCWGG	2 cut(s)	65, 309
AluBI	AGCT	2 cut(s)	44, 326
AluI	AGCT	2 cut(s)	44, 326
Alw26I	GTCTC	1 cut(s)	160
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	6 cut(s)	91, 121, 187, 229, 400, 403
ApoI	RAATTY	3 cut(s)	70, 96, 408
AspLEI	GCGC	1 cut(s)	249
AspS9I	GGNCC	2 cut(s)	35, 307
AvaII	GGWCC	1 cut(s)	307
BauI	CACGAG	1 cut(s)	270
BbvI	GCAGC	6 cut(s)	103, 133, 199, 241, 412, 415
BccI	CCATC	5 cut(s)	53, 84, 268, 337, 341
BcgI	CGANNNNNNTGC	2 cut(s)	154, 188
BciT130I	CCWGG	2 cut(s)	67, 311
BclI	TGATCA	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	41
BisI	GCNGC	7 cut(s)	92, 122, 188, 215, 230, 401, 404
BlsI	GCNGC	7 cut(s)	93, 123, 189, 216, 231, 402, 405
Bme1390I	CCNGG	2 cut(s)	67, 311
Bme18I	GGWCC	1 cut(s)	307
BmeRI	GACNNNNNGTC	1 cut(s)	305
BmgT120I	GGNCC	2 cut(s)	35, 307
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	2 cut(s)	67, 311
BmsI	GCATC	2 cut(s)	174, 184
BpmI	CTGGAG	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 347
BseBI	CCWGG	2 cut(s)	67, 311
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	4 cut(s)	64, 175, 352, 379
BseLI	CCNNNNNNNGG	2 cut(s)	275, 347
BseRI	GAGGAG	1 cut(s)	258
BseXI	GCAGC	6 cut(s)	103, 133, 199, 241, 412, 415
BshFI	GGCC	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	275, 347
BsmAI	GTCTC	1 cut(s)	160
BsmI	GAATGC	2 cut(s)	111, 249
BsnI	GGCC	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	46
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	1 cut(s)	215
BspANI	GGCC	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	1 cut(s)	46
BssSI	CACGAG	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	270
Bst2UI	CCWGG	2 cut(s)	67, 311
Bst4CI	ACNGT	3 cut(s)	16, 117, 365
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	4 cut(s)	64, 175, 352, 379
BstHHI	GCGC	1 cut(s)	249
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	4 cut(s)	127, 220, 229, 397
BstNI	CCWGG	2 cut(s)	67, 311
BstSCI	CCNGG	2 cut(s)	65, 309
BstV1I	GCAGC	6 cut(s)	103, 133, 199, 241, 412, 415
BsuRI	GGCC	1 cut(s)	36
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	4 cut(s)	64, 175, 352, 379
BtsIMutI	CAGTG	1 cut(s)	21
CfoI	GCGC	1 cut(s)	249
Cfr13I	GGNCC	2 cut(s)	35, 307
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	4 cut(s)	101, 286, 343, 417
CviJI	RGCY	5 cut(s)	36, 44, 63, 124, 326
CviKI_1	RGCY	5 cut(s)	36, 44, 63, 124, 326
CviQI	GTAC	1 cut(s)	290
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
DriI	GACNNNNNGTC	1 cut(s)	305
Eam1105I	GACNNNNNGTC	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	203
EcoRII	CCWGG	2 cut(s)	65, 309
EcoT14I	CCWWGG	1 cut(s)	342
EcoT22I	ATGCAT	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	4 cut(s)	104, 289, 346, 420
FaiI	YATR	6 cut(s)	24, 102, 281, 287, 344, 418
FatI	CATG	4 cut(s)	100, 285, 342, 416
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	7 cut(s)	92, 122, 188, 215, 230, 401, 404
FokI	GGATG	4 cut(s)	71, 162, 359, 366
Fsp4HI	GCNGC	7 cut(s)	92, 122, 188, 215, 230, 401, 404
FspBI	CTAG	1 cut(s)	41
FspI	TGCGCA	1 cut(s)	248
GlaI	GCGC	1 cut(s)	248
GluI	GCNGC	7 cut(s)	92, 122, 188, 215, 230, 401, 404
GsuI	CTGGAG	1 cut(s)	49
HaeIII	GGCC	1 cut(s)	36
HhaI	GCGC	1 cut(s)	249
Hin1II	CATG	4 cut(s)	104, 289, 346, 420
Hin6I	GCGC	1 cut(s)	247
HinP1I	GCGC	1 cut(s)	247
HincII	GTYRAC	1 cut(s)	257
HindII	GTYRAC	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	1 cut(s)	165
Hpy8I	GTNNAC	1 cut(s)	257
HpyAV	CCTTC	2 cut(s)	17, 367
HpyCH4III	ACNGT	3 cut(s)	16, 117, 365
HpyCH4V	TGCA	6 cut(s)	109, 121, 175, 187, 391, 416
HpyF10VI	GCNNNNNNNGC	4 cut(s)	127, 220, 229, 397
Hsp92II	CATG	4 cut(s)	104, 289, 346, 420
HspAI	GCGC	1 cut(s)	247
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	2 cut(s)	68, 331
LpnPI	CCDG	8 cut(s)	52, 79, 146, 261, 278, 296, 323, 382
Lsp1109I	GCAGC	6 cut(s)	103, 133, 199, 241, 412, 415
LweI	GCATC	2 cut(s)	174, 184
MaeI	CTAG	1 cut(s)	41
MaeIII	GTNAC	2 cut(s)	111, 336
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MfeI	CAATTG	1 cut(s)	386
MluCI	AATT	6 cut(s)	28, 70, 96, 192, 386, 408
MnlI	CCTC	2 cut(s)	48, 279
Mph1103I	ATGCAT	1 cut(s)	177
MseI	TTAA	1 cut(s)	315
MspR9I	CCNGG	2 cut(s)	67, 311
MunI	CAATTG	1 cut(s)	386
Mva1269I	GAATGC	2 cut(s)	111, 249
MvaI	CCWGG	2 cut(s)	67, 311
MwoI	GCNNNNNNNGC	4 cut(s)	127, 220, 229, 397
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	4 cut(s)	104, 289, 346, 420
NlaIV	GGNNCC	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	111
NsbI	TGCGCA	1 cut(s)	248
NsiI	ATGCAT	1 cut(s)	177
PctI	GAATGC	2 cut(s)	111, 249
PfoI	TCCNGGA	1 cut(s)	65
PkrI	GCNGC	7 cut(s)	93, 123, 189, 216, 231, 402, 405
Psp6I	CCWGG	2 cut(s)	65, 309
PspGI	CCWGG	2 cut(s)	65, 309
PspN4I	GGNNCC	1 cut(s)	64
PspPI	GGNCC	2 cut(s)	35, 307
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	7 cut(s)	92, 122, 188, 215, 230, 401, 404
Sau3AI	GATC	1 cut(s)	46
Sau96I	GGNCC	2 cut(s)	35, 307
ScrFI	CCNGG	2 cut(s)	67, 311
SetI	ASST	3 cut(s)	46, 315, 328
SfaNI	GCATC	2 cut(s)	174, 184
SinI	GGWCC	1 cut(s)	307
Sse9I	AATT	6 cut(s)	28, 70, 96, 192, 386, 408
SsiI	CCGC	1 cut(s)	215
SspMI	CTAG	1 cut(s)	41
StyD4I	CCNGG	2 cut(s)	65, 309
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	3 cut(s)	16, 117, 365
TaqI	TCGA	2 cut(s)	145, 164
TasI	AATT	6 cut(s)	28, 70, 96, 192, 386, 408
TauI	GCSGC	1 cut(s)	217
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	111
TseI	GCWGC	6 cut(s)	91, 121, 187, 229, 400, 403
Tsp45I	GTSAC	1 cut(s)	111
TspDTI	ATGAA	1 cut(s)	89
TspRI	CASTG	1 cut(s)	21
VpaK11BI	GGWCC	1 cut(s)	307
XapI	RAATTY	3 cut(s)	70, 96, 408
XspI	CTAG	1 cut(s)	41
Zsp2I	ATGCAT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.