Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003336

Physical Location & Seq

Genomic Coordinates Reverse (-)

22800063 .. 22806078

Gene Structure 6016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G223000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGCTCCTACGACTCCAAGACTAGTTGTGCCAATAGACTTGAACAACAAACCATGGCAGCAAAAACTACCTCTTCACAATCGTTGGCACCCTCACATACCCCCAGTGGCTGAGGTTAAAACTGGTGAGGTCTTTAGAGTAGAGATGGTTGACTGGACTGGAGGTTCTATTAAAGATGATGACTCTGCACTAGATATAAAATCTATAGACCTCTCAACTGTTCATTATCTTAGTGGGCCAATTAGAGTTTTGGACAAGGATGGCACTCCAGCAAAGCCAGGTGATCTTCTGGCAGTTGAGATATGCAACCTGGGTCCTCTCCCAGGAGATGAATGGGGTTTCACAGCAACATTTGACAGAGAAAATGGAGGGGGTTTTCTCACTGACCATTTTCCTTGTGCAACCAAAGCTATTTGGTACTTTGAAGGGATATATGCGTACTCACCTCAAATACCAGGAGTGAGATTCCCAGGTTTAACCCACCCCGGAATAGTTGGAACAGCACCATCGATGGAACTCCTGAATATATGGAATGAAAGGGAGAGAGAACTTGAAGAAAATGGACTCAACTCTATGAAACTATGTGAGGTTTTGCATCAACGACCATTGGCTAACCTACCATCAACAAAAGGTTGCGTCCTAGGAGGGATCAAGGAGGGCACTCCTGAATGGGAAAAGATAGCCTTGGAGGCTGCAAGAACAATTCCAGGAAGAGAAAATGGTGGCAATTGTGACATTAAAAATCTTAGTAGTGGTTCAAAGATATACCTTCCAGTATTCATTGAAGGAGCAAATCTTAGCACTGGTGACATGCACTTTTCCCAGGGCGACGGTGAAATTTCATTCTGTGGAGCAATTGAGATGAGTGGTTTCCTGGAGCTCAAGTGTGAAATTATAAGGGATGGAATGAAAGAATACCTTACACCAATGGGGCCCACTCCTCTTCATGTGAACCCAATCTTTGAGATAGGCCCTGTCGAGCCAAGATTTTCAGAATGGTTGGTGTTTGAGGGCATCAGTGTTGATGAGAGTGGGAAGCAGCATTACCTAGATGCAACTGTTGCTTATAAGCGTGCAGTACTGAATGCTATTGACTACCTCTCTAAATTTGGATACTCCAAAGAGCAGAGCTACCTTCTGTTGTCATGCTGCCCATGTGAGGGAAGAATTTCTGGAATAGTGGACTCTCCCAATGCCATTGCAACCTTAGCAATCCCAACAGCTATCTTTGACCAGGATATACGTCCAAGAGCAAACAAGGTGCCAGTTGGGCCCCGGATAGTGAGGAAACCAGATGTCCTGAAATGTACTTATGATGGAAGTTTGGCAACTACAAGGAACCCTAGCTCAGCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00460 ko00630 ko00910 ko01200 map00460 map00630 map00910 map01200

Pfam Domains

Protein Families

FmdA_AmdA

Protein Analysis

453

Amino Acids

49.57

Weight (kDa)

5.27

Isoelectric Point (pI)

35.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37550 AT4G37550 AT4G37550 AT4G37550 AT4G37550 AT4G37550 AT4G37560 AT4G37560
fragaria_vesca	FvH4_1g17390 FvH4_1g17390 FvH4_1g17390 FvH4_1g17390 FvH4_1g17390 FvH4_1g17390 FvH4_1g17390 FvH4_1g17390 FvH4_1g17390 FvH4_1g17390 FvH4_1g17390 FvH4_1g17390 FvH4_1g17390
malus_domestica	MD00G1015700.v1.1 MD15G1294800.v1.1
prunus_persica	Prupe.6G223000_v2.0.a1
pyrus_communis	pycom02g14860 pycom15g25760
rosa_chinensis	RchiOBHm_Chr2g0107581 RchiOBHm_Chr2g0107621
rosa_laevigata	RLG00000017592 RLG00000017607
rosa_multiflora	Rmu_sc0000800.1_g000029
rosa_roxburghii	Rroxscaffold_2G00136180
rosa_rugosa	Rorug02G0145100
rosa_samantha	Rh2AG195000 Rh2CG200700
rosa_wichuraiana	Rw2G015450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	896, 1068
AccB1I	GGYRCC	2 cut(s)	87, 1261
AclWI	GGATC	1 cut(s)	656
AcsI	RAATTY	3 cut(s)	837, 1106, 1167
AfaI	GTAC	4 cut(s)	419, 440, 1080, 1309
AfiI	CCNNNNNNNGG	3 cut(s)	323, 1159, 1160
AgsI	TTSAA	5 cut(s)	43, 425, 554, 759, 785
AhlI	ACTAGT	1 cut(s)	22
AjnI	CCWGG	9 cut(s)	277, 309, 322, 454, 469, 706, 822, 873, 1233
AloI	GAACNNNNNNTCC	2 cut(s)	148, 180
AluBI	AGCT	5 cut(s)	410, 880, 1131, 1223, 1347
AluI	AGCT	5 cut(s)	410, 880, 1131, 1223, 1347
Alw21I	GWGCWC	1 cut(s)	882
AlwI	GGATC	1 cut(s)	656
AlwNI	CAGNNNCTG	1 cut(s)	110
AoxI	GGCC	4 cut(s)	236, 932, 970, 1271
ApaI	GGGCCC	2 cut(s)	936, 1275
ApeKI	GCWGC	4 cut(s)	58, 692, 1039, 1149
ApoI	RAATTY	3 cut(s)	837, 1106, 1167
Asp700I	GAANNNNTTC	1 cut(s)	1168
AspA2I	CCTAGG	1 cut(s)	640
AspS9I	GGNCC	7 cut(s)	236, 314, 932, 933, 971, 1271, 1272
AsuC2I	CCSGG	2 cut(s)	486, 1276
AsuHPI	GGTGA	5 cut(s)	137, 293, 435, 818, 845
AvaII	GGWCC	1 cut(s)	314
AvrII	CCTAGG	1 cut(s)	640
BaeGI	GKGCMC	3 cut(s)	662, 936, 1275
BanI	GGYRCC	2 cut(s)	87, 1261
BanII	GRGCYC	3 cut(s)	882, 936, 1275
BarI	GAAGNNNNNNTAC	2 cut(s)	1028, 1060
Bbv12I	GWGCWC	1 cut(s)	882
BbvCI	CCTCAGC	1 cut(s)	111
BbvI	GCAGC	4 cut(s)	70, 679, 1051, 1136
BccI	CCATC	7 cut(s)	139, 254, 505, 514, 628, 896, 1310
BciT130I	CCWGG	9 cut(s)	279, 311, 324, 456, 471, 708, 824, 875, 1235
BciVI	GTATCC	1 cut(s)	1106
BcnI	CCSGG	2 cut(s)	486, 1276
BcuI	ACTAGT	1 cut(s)	22
BfaI	CTAG	5 cut(s)	23, 191, 641, 1049, 1344
BfmI	CTRYAG	1 cut(s)	204
BfuI	GTATCC	1 cut(s)	1106
BglI	GCCNNNNNGGC	2 cut(s)	689, 1270
BisI	GCNGC	4 cut(s)	59, 693, 1040, 1150
BlnI	CCTAGG	1 cut(s)	640
BlpI	GCTNAGC	1 cut(s)	1348
BlsI	GCNGC	4 cut(s)	60, 694, 1041, 1151
BmcAI	AGTACT	1 cut(s)	1080
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	7 cut(s)	236, 314, 932, 933, 971, 1271, 1272
BmiI	GGNNCC	9 cut(s)	6, 89, 315, 933, 934, 1263, 1273, 1274, 1340
BmrI	ACTGGG	1 cut(s)	98
BmsI	GCATC	3 cut(s)	604, 1023, 1042
BmuI	ACTGGG	1 cut(s)	98
BpmI	CTGGAG	3 cut(s)	180, 252, 896
Bpu10I	CCTNAGC	2 cut(s)	111, 1207
Bpu1102I	GCTNAGC	1 cut(s)	1348
BpuEI	CTTGAG	1 cut(s)	866
BpuMI	CCSGG	2 cut(s)	486, 1276
Bsa29I	ATCGAT	1 cut(s)	509
BsaXI	ACNNNNNCTCC	2 cut(s)	869, 899
Bsc4I	CCNNNNNNNGG	3 cut(s)	323, 1159, 1160
Bse1I	ACTGG	7 cut(s)	104, 127, 158, 163, 773, 808, 1265
Bse3DI	GCAATG	1 cut(s)	1197
BseBI	CCWGG	9 cut(s)	279, 311, 324, 456, 471, 708, 824, 875, 1235
BseCI	ATCGAT	1 cut(s)	509
BseGI	GGATG	2 cut(s)	265, 907
BseLI	CCNNNNNNNGG	3 cut(s)	323, 1159, 1160
BseMI	GCAATG	1 cut(s)	1197
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	7 cut(s)	104, 127, 158, 163, 773, 808, 1265
BseRI	GAGGAG	1 cut(s)	930
BseSI	GKGCMC	3 cut(s)	662, 936, 1275
BseXI	GCAGC	4 cut(s)	70, 679, 1051, 1136
BsgI	GTGCAG	2 cut(s)	171, 1095
BshFI	GGCC	4 cut(s)	238, 934, 972, 1273
BshNI	GGYRCC	2 cut(s)	87, 1261
BshVI	ATCGAT	1 cut(s)	509
BsiHKAI	GWGCWC	1 cut(s)	882
BsiSI	CCGG	2 cut(s)	486, 1276
BslI	CCNNNNNNNGG	3 cut(s)	323, 1159, 1160
BsmI	GAATGC	1 cut(s)	1090
BsnI	GGCC	4 cut(s)	238, 934, 972, 1273
Bsp120I	GGGCCC	2 cut(s)	932, 1271
Bsp1286I	GDGCHC	4 cut(s)	662, 882, 936, 1275
Bsp143I	GATC	2 cut(s)	283, 648
Bsp1720I	GCTNAGC	1 cut(s)	1348
Bsp19I	CCATGG	1 cut(s)	53
BspANI	GGCC	4 cut(s)	238, 934, 972, 1273
BspCNI	CTCAG	1 cut(s)	103
BspDI	ATCGAT	1 cut(s)	509
BspLI	GGNNCC	9 cut(s)	6, 89, 315, 933, 934, 1263, 1273, 1274, 1340
BspPI	GGATC	1 cut(s)	656
BspT107I	GGYRCC	2 cut(s)	87, 1261
BsrDI	GCAATG	1 cut(s)	1197
BsrI	ACTGG	7 cut(s)	104, 127, 158, 163, 773, 808, 1265
BssMI	GATC	2 cut(s)	283, 648
BssT1I	CCWWGG	3 cut(s)	53, 640, 684
Bst2UI	CCWGG	9 cut(s)	279, 311, 324, 456, 471, 708, 824, 875, 1235
Bst4CI	ACNGT	3 cut(s)	220, 833, 1060
Bst6I	CTCTTC	3 cut(s)	78, 706, 948
BstAPI	GCANNNNNTGC	1 cut(s)	1061
BstC8I	GCNNGC	1 cut(s)	1074
BstDEI	CTNAG	6 cut(s)	111, 230, 746, 797, 1207, 1348
BstDSI	CCRYGG	1 cut(s)	53
BstENI	CCTNNNNNAGG	1 cut(s)	321
BstF5I	GGATG	2 cut(s)	265, 907
BstKTI	GATC	2 cut(s)	286, 651
BstMBI	GATC	2 cut(s)	283, 648
BstMWI	GCNNNNNNNGC	5 cut(s)	407, 689, 1061, 1208, 1270
BstNI	CCWGG	9 cut(s)	279, 311, 324, 456, 471, 708, 824, 875, 1235
BstNSI	RCATGY	1 cut(s)	814
BstSFI	CTRYAG	1 cut(s)	204
BstSLI	GKGCMC	3 cut(s)	662, 936, 1275
BstV1I	GCAGC	4 cut(s)	70, 679, 1051, 1136
Bsu15I	ATCGAT	1 cut(s)	509
BsuI	GTATCC	1 cut(s)	1106
BsuRI	GGCC	4 cut(s)	238, 934, 972, 1273
BsuTUI	ATCGAT	1 cut(s)	509
BtgI	CCRYGG	1 cut(s)	53
BtsCI	GGATG	2 cut(s)	265, 907
BtsIMutI	CAGTG	4 cut(s)	111, 381, 801, 1024
Cac8I	GCNNGC	1 cut(s)	1074
CaiI	CAGNNNCTG	1 cut(s)	110
Cfr13I	GGNCC	7 cut(s)	236, 314, 932, 933, 971, 1271, 1272
ClaI	ATCGAT	1 cut(s)	509
CseI	GACGC	1 cut(s)	625
Csp6I	GTAC	4 cut(s)	418, 439, 1079, 1308
CviAII	CATG	5 cut(s)	54, 811, 947, 1146, 1155
CviQI	GTAC	4 cut(s)	418, 439, 1079, 1308
DdeI	CTNAG	6 cut(s)	111, 230, 746, 797, 1207, 1348
DpnI	GATC	2 cut(s)	285, 650
DpnII	GATC	2 cut(s)	283, 648
Eam1104I	CTCTTC	3 cut(s)	78, 706, 948
EarI	CTCTTC	3 cut(s)	78, 706, 948
Ecl136II	GAGCTC	1 cut(s)	880
Eco130I	CCWWGG	3 cut(s)	53, 640, 684
Eco24I	GRGCYC	3 cut(s)	882, 936, 1275
Eco47I	GGWCC	1 cut(s)	314
Eco53kI	GAGCTC	1 cut(s)	880
EcoICRI	GAGCTC	1 cut(s)	880
EcoNI	CCTNNNNNAGG	1 cut(s)	321
EcoO109I	RGGNCCY	4 cut(s)	314, 932, 971, 1272
EcoRII	CCWGG	9 cut(s)	277, 309, 322, 454, 469, 706, 822, 873, 1233
EcoT14I	CCWWGG	3 cut(s)	53, 640, 684
EcoT38I	GRGCYC	3 cut(s)	882, 936, 1275
ErhI	CCWWGG	3 cut(s)	53, 640, 684
FaeI	CATG	5 cut(s)	57, 814, 950, 1149, 1158
FalI	AAGNNNNNCTT	4 cut(s)	668, 700, 903, 935
FatI	CATG	5 cut(s)	53, 810, 946, 1145, 1154
Fnu4HI	GCNGC	4 cut(s)	59, 693, 1040, 1150
FokI	GGATG	2 cut(s)	272, 914
FriOI	GRGCYC	3 cut(s)	882, 936, 1275
Fsp4HI	GCNGC	4 cut(s)	59, 693, 1040, 1150
FspBI	CTAG	5 cut(s)	23, 191, 641, 1049, 1344
GluI	GCNGC	4 cut(s)	59, 693, 1040, 1150
GsuI	CTGGAG	3 cut(s)	180, 252, 896
HaeIII	GGCC	4 cut(s)	238, 934, 972, 1273
HapII	CCGG	2 cut(s)	486, 1276
HgaI	GACGC	1 cut(s)	625
Hin1II	CATG	5 cut(s)	57, 814, 950, 1149, 1158
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	5 cut(s)	13, 182, 465, 564, 1184
HpaII	CCGG	2 cut(s)	486, 1276
HphI	GGTGA	5 cut(s)	137, 293, 435, 818, 845
Hpy166II	GTNNAC	3 cut(s)	151, 952, 1183
Hpy188I	TCNGA	1 cut(s)	994
Hpy188III	TCNNGA	4 cut(s)	520, 665, 1173, 1300
Hpy8I	GTNNAC	3 cut(s)	151, 952, 1183
Hpy99I	CGWCG	1 cut(s)	833
HpyAV	CCTTC	4 cut(s)	419, 779, 779, 1145
HpyCH4III	ACNGT	3 cut(s)	220, 833, 1060
HpyCH4IV	ACGT	1 cut(s)	1243
HpyCH4V	TGCA	9 cut(s)	188, 306, 401, 595, 695, 814, 1055, 1076, 1202
HpyF10VI	GCNNNNNNNGC	5 cut(s)	407, 689, 1061, 1208, 1270
HpyF3I	CTNAG	6 cut(s)	111, 230, 746, 797, 1207, 1348
HpySE526I	ACGT	1 cut(s)	1243
Hsp92II	CATG	5 cut(s)	57, 814, 950, 1149, 1158
Kzo9I	GATC	2 cut(s)	283, 648
LmnI	GCTCC	4 cut(s)	10, 788, 851, 877
Lsp1109I	GCAGC	4 cut(s)	70, 679, 1051, 1136
LweI	GCATC	3 cut(s)	604, 1023, 1042
MaeI	CTAG	5 cut(s)	23, 191, 641, 1049, 1344
MaeII	ACGT	1 cut(s)	1243
MaeIII	GTNAC	2 cut(s)	731, 806
MalI	GATC	2 cut(s)	285, 650
MboI	GATC	2 cut(s)	283, 648
MboII	GAAGA	6 cut(s)	65, 278, 566, 723, 935, 1176
MfeI	CAATTG	2 cut(s)	727, 855
MhlI	GDGCHC	4 cut(s)	662, 882, 936, 1275
MluCI	AATT	8 cut(s)	240, 702, 727, 837, 855, 891, 1106, 1167
MlyI	GAGTC	4 cut(s)	7, 176, 558, 1178
MmeI	TCCRAC	1 cut(s)	475
MroXI	GAANNNNTTC	1 cut(s)	1168
MseI	TTAA	4 cut(s)	117, 171, 476, 738
MspI	CCGG	2 cut(s)	486, 1276
MunI	CAATTG	2 cut(s)	727, 855
Mva1269I	GAATGC	1 cut(s)	1090
MvaI	CCWGG	9 cut(s)	279, 311, 324, 456, 471, 708, 824, 875, 1235
MwoI	GCNNNNNNNGC	5 cut(s)	407, 689, 1061, 1208, 1270
NciI	CCSGG	2 cut(s)	486, 1276
NcoI	CCATGG	1 cut(s)	53
NdeII	GATC	2 cut(s)	283, 648
NlaIII	CATG	5 cut(s)	57, 814, 950, 1149, 1158
NlaIV	GGNNCC	9 cut(s)	6, 89, 315, 933, 934, 1263, 1273, 1274, 1340
NmuCI	GTSAC	2 cut(s)	731, 806
NspI	RCATGY	1 cut(s)	814
PasI	CCCWGGG	1 cut(s)	823
PctI	GAATGC	1 cut(s)	1090
PdmI	GAANNNNTTC	1 cut(s)	1168
PfeI	GAWTC	1 cut(s)	465
PfoI	TCCNGGA	2 cut(s)	706, 873
PkrI	GCNGC	4 cut(s)	60, 694, 1041, 1151
PleI	GAGTC	4 cut(s)	7, 176, 558, 1178
PpsI	GAGTC	4 cut(s)	7, 176, 558, 1178
PpuMI	RGGWCCY	1 cut(s)	314
PsiI	TTATAA	2 cut(s)	896, 1068
Psp124BI	GAGCTC	1 cut(s)	882
Psp5II	RGGWCCY	1 cut(s)	314
Psp6I	CCWGG	9 cut(s)	277, 309, 322, 454, 469, 706, 822, 873, 1233
PspGI	CCWGG	9 cut(s)	277, 309, 322, 454, 469, 706, 822, 873, 1233
PspN4I	GGNNCC	9 cut(s)	6, 89, 315, 933, 934, 1263, 1273, 1274, 1340
PspOMI	GGGCCC	2 cut(s)	932, 1271
PspPI	GGNCC	7 cut(s)	236, 314, 932, 933, 971, 1271, 1272
PspPPI	RGGWCCY	1 cut(s)	314
PstNI	CAGNNNCTG	1 cut(s)	110
RsaI	GTAC	4 cut(s)	419, 440, 1080, 1309
RsaNI	GTAC	4 cut(s)	418, 439, 1079, 1308
SacI	GAGCTC	1 cut(s)	882
SaqAI	TTAA	4 cut(s)	117, 171, 476, 738
SatI	GCNGC	4 cut(s)	59, 693, 1040, 1150
Sau3AI	GATC	2 cut(s)	283, 648
Sau96I	GGNCC	7 cut(s)	236, 314, 932, 933, 971, 1271, 1272
ScaI	AGTACT	1 cut(s)	1080
SchI	GAGTC	4 cut(s)	7, 176, 558, 1178
SduI	GDGCHC	4 cut(s)	662, 882, 936, 1275
SfaNI	GCATC	3 cut(s)	604, 1023, 1042
SfcI	CTRYAG	1 cut(s)	204
SinI	GGWCC	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
SpeI	ACTAGT	1 cut(s)	22
Sse9I	AATT	8 cut(s)	240, 702, 727, 837, 855, 891, 1106, 1167
SspMI	CTAG	5 cut(s)	23, 191, 641, 1049, 1344
SstI	GAGCTC	1 cut(s)	882
StyI	CCWWGG	3 cut(s)	53, 640, 684
TaaI	ACNGT	3 cut(s)	220, 833, 1060
TaiI	ACGT	1 cut(s)	1246
TaqI	TCGA	2 cut(s)	509, 978
TasI	AATT	8 cut(s)	240, 702, 727, 837, 855, 891, 1106, 1167
TatI	WGTACW	2 cut(s)	1078, 1307
TfiI	GAWTC	1 cut(s)	465
Tru1I	TTAA	4 cut(s)	117, 171, 476, 738
Tru9I	TTAA	4 cut(s)	117, 171, 476, 738
TscAI	CASTG	4 cut(s)	111, 388, 808, 1024
TseFI	GTSAC	2 cut(s)	731, 806
TseI	GCWGC	4 cut(s)	58, 692, 1039, 1149
Tsp45I	GTSAC	2 cut(s)	731, 806
TspDTI	ATGAA	8 cut(s)	212, 345, 549, 590, 769, 831, 923, 935
TspRI	CASTG	4 cut(s)	111, 388, 808, 1024
VpaK11BI	GGWCC	1 cut(s)	314
XagI	CCTNNNNNAGG	1 cut(s)	321
XapI	RAATTY	3 cut(s)	837, 1106, 1167
XceI	RCATGY	1 cut(s)	814
XcmI	CCANNNNNNNNNTGG	1 cut(s)	330
XmaJI	CCTAGG	1 cut(s)	640
XmnI	GAANNNNTTC	1 cut(s)	1168
XspI	CTAG	5 cut(s)	23, 191, 641, 1049, 1344
ZrmI	AGTACT	1 cut(s)	1080

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.