Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003336

Physical Location & Seq

Genomic Coordinates Reverse (-)

19030219 .. 19032817

Gene Structure 2599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017607

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGCTCCTGGGACTCCAAGATTTGTAGTTCCGATAGACTTGGGCAGCAAACCATGGCAGCGAAAGCTACCTCTTCACAACTGTTGGCACCCCGAAATACCCCCAGTGGCTGAGGTCAAAACAGGTGAGTTATTTAGAGCAGAGATGGTAGACTGGACTGGAGGTGCTATTAACGATTATGACTCTGCAGTAGACGTAAAAAACATAGACCTCTCAACTTTCATGCTTCAAACTGCTACTGCAGTATTTCAATCAAACATCCAAGTTGTCGGACCATTTAGGATTTCAGACGATGGAATTCCAGCACAGCCGGGTGATCTTCTGGTAGTTGAGATATGCAACTTGGGTCCTCTTCCAGGAGATGAATGGGGTTTCACAGGAACATTTGACAGAGAAAATGGAGGGGGTTTTCTGACTGACCATTTTCCTTGTGCAACCAAAGCTATTTGGTATTTTGAAGGGATATATGCCTACTCTCCTCAAATACCAGGAGTGAGATTCCCGGGTTTAACACACCCTGGAATAGTTGGAACAGCACCATCAATGGAACTCTTGAACATATGGAATAAGAGGGAGAGAGAACTTGAGAAAAATGGAGTCAAGTATCTGAAACTATGTGAGGTTGTGCACCAACGGCCCTTGGCTAGCCTACCATCAACAAAAGGTTGCGTCCTTGGAGGGGGCACACCCAAATGGGAAAAGATAGCATTAGAGGCTGCAAGAACAATTCCAGGAAGAGAAAATGGAGCAAATCTTAGCACTGGTGGCATGCACTTTTCCCAGGAAGATGATGGAATCTCATTCTGTGATGCGATTGAGATGAGTGGTTTCCTGGAGCTCAAGTGTGAAATTATAAGGGATGGGATGAAAGAATACCTTACACCGACGGGGCCAACTCCTCTTCATGTGAATCCAATCTTTGAAATAGCTCCCGTCGAGCCAAGATTCTCGGAATGGTTGGTATTTGAGGGCATCAGTGTTGATGAGAGTGGGAAGCAGCATTACCTAGATGCAACTGTTGCTTACAAGCGTGCAGTACTGAATGCCATCGACTACCTCTCCAAATTTGGATACTCAAAAGAACAGAGCTACCTTCTGCTGTCATGCTTTCCATGTGAGGGAAGAATTTCTGGAATAGTCGACGCTCCCAATGCTGTTGCAACCCTCACAATCCCAACAGCTATCTTTGACCAGGATATTCGACCAAAAACGAACAAGGTGCCAGTTGGTCTGCGGATAGTGAGGACACCAGATGTCCTAAAATGTACTTACGATGGAAATTTGCCAACCACAAGGAACCCTAGCTCAGCAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00460 ko00630 ko00910 ko01200 map00460 map00630 map00910 map01200

Pfam Domains

Protein Families

FmdA_AmdA

Protein Analysis

439

Amino Acids

48.08

Weight (kDa)

5.25

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FmdA_AmdA	PF03069	12 - 251	6.5e-69	Acetamidase/Formamidase family
FmdA_AmdA	PF03069	248 - 398	2.2e-59	Acetamidase/Formamidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37550 AT4G37550 AT4G37550 AT4G37550 AT4G37550 AT4G37550 AT4G37560 AT4G37560
fragaria_vesca	FvH4_1g17390 FvH4_1g17390 FvH4_1g17390 FvH4_1g17390 FvH4_1g17390 FvH4_1g17390 FvH4_1g17390 FvH4_1g17390 FvH4_1g17390 FvH4_1g17390 FvH4_1g17390 FvH4_1g17390 FvH4_1g17390
malus_domestica	MD00G1015700.v1.1 MD15G1294800.v1.1
prunus_persica	Prupe.6G223000_v2.0.a1
pyrus_communis	pycom02g14860 pycom15g25760
rosa_chinensis	RchiOBHm_Chr2g0107581 RchiOBHm_Chr2g0107621
rosa_laevigata	RLG00000017592 RLG00000017607
rosa_multiflora	Rmu_sc0000800.1_g000029
rosa_roxburghii	Rroxscaffold_2G00136180
rosa_rugosa	Rorug02G0145100
rosa_samantha	Rh2AG195000 Rh2CG200700
rosa_wichuraiana	Rw2G015450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	854
AccB1I	GGYRCC	2 cut(s)	87, 1219
AccI	GTMKAC	3 cut(s)	150, 192, 1140
AciI	CCGC	1 cut(s)	1234
AcsI	RAATTY	4 cut(s)	297, 1064, 1125, 1279
AfaI	GTAC	2 cut(s)	1038, 1267
AfiI	CCNNNNNNNGG	3 cut(s)	356, 679, 1118
AgsI	TTSAA	5 cut(s)	230, 251, 458, 556, 923
AjnI	CCWGG	8 cut(s)	7, 355, 487, 517, 730, 780, 831, 1191
AluBI	AGCT	7 cut(s)	67, 443, 838, 929, 1089, 1181, 1305
AluI	AGCT	7 cut(s)	67, 443, 838, 929, 1089, 1181, 1305
Alw21I	GWGCWC	2 cut(s)	630, 840
Alw44I	GTGCAC	1 cut(s)	626
AlwNI	CAGNNNCTG	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	502
AoxI	GGCC	2 cut(s)	635, 890
ApaLI	GTGCAC	1 cut(s)	626
ApeKI	GCWGC	4 cut(s)	45, 58, 716, 997
ApoI	RAATTY	4 cut(s)	297, 1064, 1125, 1279
Asp700I	GAANNNNTTC	1 cut(s)	1126
AspS9I	GGNCC	4 cut(s)	272, 347, 636, 890
AsuC2I	CCSGG	3 cut(s)	312, 503, 504
AsuHPI	GGTGA	2 cut(s)	137, 326
AsuNHI	GCTAGC	1 cut(s)	644
AvaI	CYCGRG	1 cut(s)	502
AvaII	GGWCC	2 cut(s)	272, 347
BaeGI	GKGCMC	2 cut(s)	630, 686
BanI	GGYRCC	2 cut(s)	87, 1219
BanII	GRGCYC	1 cut(s)	840
BarI	GAAGNNNNNNTAC	2 cut(s)	986, 1018
Bbv12I	GWGCWC	2 cut(s)	630, 840
BbvCI	CCTCAGC	1 cut(s)	111
BbvI	GCAGC	4 cut(s)	57, 70, 703, 1009
BccI	CCATC	8 cut(s)	139, 287, 547, 661, 785, 854, 1055, 1268
BceAI	ACGGC	1 cut(s)	650
BcgI	CGANNNNNNTGC	2 cut(s)	1201, 1235
BciT130I	CCWGG	8 cut(s)	9, 357, 489, 519, 732, 782, 833, 1193
BciVI	GTATCC	1 cut(s)	1064
BcnI	CCSGG	3 cut(s)	312, 503, 504
BfaI	CTAG	3 cut(s)	645, 1007, 1302
BfmI	CTRYAG	2 cut(s)	186, 240
BfuI	GTATCC	1 cut(s)	1064
BisI	GCNGC	4 cut(s)	46, 59, 717, 998
BlpI	GCTNAGC	1 cut(s)	1306
BlsI	GCNGC	4 cut(s)	47, 60, 718, 999
BmcAI	AGTACT	1 cut(s)	1038
Bme18I	GGWCC	2 cut(s)	272, 347
BmeT110I	CYCGRG	1 cut(s)	502
BmgT120I	GGNCC	4 cut(s)	272, 347, 636, 890
BmiI	GGNNCC	6 cut(s)	6, 89, 348, 891, 1221, 1298
BmrI	ACTGGG	1 cut(s)	98
BmsI	GCATC	3 cut(s)	799, 981, 1000
BmtI	GCTAGC	1 cut(s)	648
BmuI	ACTGGG	1 cut(s)	98
BpmI	CTGGAG	2 cut(s)	180, 854
Bpu10I	CCTNAGC	1 cut(s)	111
Bpu1102I	GCTNAGC	1 cut(s)	1306
BpuEI	CTTGAG	2 cut(s)	605, 824
BpuMI	CCSGG	3 cut(s)	312, 503, 504
BsaJI	CCNNGG	7 cut(s)	8, 53, 502, 517, 639, 673, 780
BsaXI	ACNNNNNCTCC	4 cut(s)	827, 857, 1043, 1073
Bsc4I	CCNNNNNNNGG	3 cut(s)	356, 679, 1118
Bse1I	ACTGG	5 cut(s)	104, 158, 163, 766, 1223
BseBI	CCWGG	8 cut(s)	9, 357, 489, 519, 732, 782, 833, 1193
BseDI	CCNNGG	7 cut(s)	8, 53, 502, 517, 639, 673, 780
BseGI	GGATG	3 cut(s)	258, 865, 870
BseLI	CCNNNNNNNGG	3 cut(s)	356, 679, 1118
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	5 cut(s)	104, 158, 163, 766, 1223
BseRI	GAGGAG	2 cut(s)	468, 888
BseSI	GKGCMC	2 cut(s)	630, 686
BseXI	GCAGC	4 cut(s)	57, 70, 703, 1009
BsgI	GTGCAG	1 cut(s)	1053
BshFI	GGCC	2 cut(s)	637, 892
BshNI	GGYRCC	2 cut(s)	87, 1219
BsiHKAI	GWGCWC	2 cut(s)	630, 840
BsiHKCI	CYCGRG	1 cut(s)	502
BsiSI	CCGG	2 cut(s)	311, 503
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	3 cut(s)	356, 679, 1118
BsmFI	GGGAC	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	1048
BsnI	GGCC	2 cut(s)	637, 892
BsoBI	CYCGRG	1 cut(s)	502
Bsp1286I	GDGCHC	3 cut(s)	630, 686, 840
Bsp143I	GATC	1 cut(s)	316
Bsp1720I	GCTNAGC	1 cut(s)	1306
Bsp19I	CCATGG	1 cut(s)	53
BspACI	CCGC	1 cut(s)	1234
BspANI	GGCC	2 cut(s)	637, 892
BspCNI	CTCAG	1 cut(s)	103
BspLI	GGNNCC	6 cut(s)	6, 89, 348, 891, 1221, 1298
BspMAI	CTGCAG	2 cut(s)	190, 244
BspOI	GCTAGC	1 cut(s)	648
BspT107I	GGYRCC	2 cut(s)	87, 1219
BsrI	ACTGG	5 cut(s)	104, 158, 163, 766, 1223
BssECI	CCNNGG	7 cut(s)	8, 53, 502, 517, 639, 673, 780
BssMI	GATC	1 cut(s)	316
BssT1I	CCWWGG	3 cut(s)	53, 639, 673
Bst2UI	CCWGG	8 cut(s)	9, 357, 489, 519, 732, 782, 833, 1193
Bst4CI	ACNGT	2 cut(s)	83, 1018
Bst6I	CTCTTC	4 cut(s)	78, 357, 730, 906
BstAPI	GCANNNNNTGC	1 cut(s)	1019
BstC8I	GCNNGC	3 cut(s)	646, 770, 1032
BstDEI	CTNAG	3 cut(s)	111, 755, 1306
BstDSI	CCRYGG	1 cut(s)	53
BstENI	CCTNNNNNAGG	1 cut(s)	354
BstF5I	GGATG	3 cut(s)	258, 865, 870
BstKTI	GATC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	7 cut(s)	64, 440, 634, 713, 765, 1019, 1151
BstNI	CCWGG	8 cut(s)	9, 357, 489, 519, 732, 782, 833, 1193
BstNSI	RCATGY	1 cut(s)	772
BstSFI	CTRYAG	2 cut(s)	186, 240
BstSLI	GKGCMC	2 cut(s)	630, 686
BstV1I	GCAGC	4 cut(s)	57, 70, 703, 1009
BsuI	GTATCC	1 cut(s)	1064
BsuRI	GGCC	2 cut(s)	637, 892
BtgI	CCRYGG	1 cut(s)	53
BtsCI	GGATG	3 cut(s)	258, 865, 870
BtsIMutI	CAGTG	3 cut(s)	111, 759, 982
Cac8I	GCNNGC	3 cut(s)	646, 770, 1032
CaiI	CAGNNNCTG	1 cut(s)	110
Cfr13I	GGNCC	4 cut(s)	272, 347, 636, 890
Cfr9I	CCCGGG	1 cut(s)	502
CseI	GACGC	2 cut(s)	658, 1151
Csp6I	GTAC	2 cut(s)	1037, 1266
CviAII	CATG	6 cut(s)	54, 223, 769, 905, 1104, 1113
CviQI	GTAC	2 cut(s)	1037, 1266
DdeI	CTNAG	3 cut(s)	111, 755, 1306
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
Eam1104I	CTCTTC	4 cut(s)	78, 357, 730, 906
EarI	CTCTTC	4 cut(s)	78, 357, 730, 906
Ecl136II	GAGCTC	1 cut(s)	838
Eco130I	CCWWGG	3 cut(s)	53, 639, 673
Eco24I	GRGCYC	1 cut(s)	840
Eco47I	GGWCC	2 cut(s)	272, 347
Eco53kI	GAGCTC	1 cut(s)	838
Eco88I	CYCGRG	1 cut(s)	502
EcoICRI	GAGCTC	1 cut(s)	838
EcoNI	CCTNNNNNAGG	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	347
EcoRI	GAATTC	1 cut(s)	297
EcoRII	CCWGG	8 cut(s)	7, 355, 487, 517, 730, 780, 831, 1191
EcoT14I	CCWWGG	3 cut(s)	53, 639, 673
EcoT38I	GRGCYC	1 cut(s)	840
ErhI	CCWWGG	3 cut(s)	53, 639, 673
FaeI	CATG	6 cut(s)	57, 226, 772, 908, 1107, 1116
FalI	AAGNNNNNCTT	2 cut(s)	861, 893
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	6 cut(s)	53, 222, 768, 904, 1103, 1112
FauNDI	CATATG	1 cut(s)	560
FblI	GTMKAC	3 cut(s)	150, 192, 1140
Fnu4HI	GCNGC	4 cut(s)	46, 59, 717, 998
FokI	GGATG	3 cut(s)	245, 872, 877
FriOI	GRGCYC	1 cut(s)	840
Fsp4HI	GCNGC	4 cut(s)	46, 59, 717, 998
FspBI	CTAG	3 cut(s)	645, 1007, 1302
GluI	GCNGC	4 cut(s)	46, 59, 717, 998
GsuI	CTGGAG	2 cut(s)	180, 854
HaeIII	GGCC	2 cut(s)	637, 892
HapII	CCGG	2 cut(s)	311, 503
HgaI	GACGC	2 cut(s)	658, 1151
Hin1II	CATG	6 cut(s)	57, 226, 772, 908, 1107, 1116
HincII	GTYRAC	1 cut(s)	1141
HindII	GTYRAC	1 cut(s)	1141
HinfI	GANTC	7 cut(s)	13, 182, 498, 597, 795, 910, 945
HpaII	CCGG	2 cut(s)	311, 503
HphI	GGTGA	2 cut(s)	137, 326
Hpy166II	GTNNAC	4 cut(s)	151, 193, 628, 1141
Hpy188I	TCNGA	6 cut(s)	33, 272, 289, 414, 609, 952
Hpy188III	TCNNGA	2 cut(s)	553, 1131
Hpy8I	GTNNAC	4 cut(s)	151, 193, 628, 1141
Hpy99I	CGWCG	3 cut(s)	889, 938, 1145
HpyAV	CCTTC	2 cut(s)	452, 1103
HpyCH4III	ACNGT	2 cut(s)	83, 1018
HpyCH4IV	ACGT	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	7 cut(s)	64, 440, 634, 713, 765, 1019, 1151
HpyF3I	CTNAG	3 cut(s)	111, 755, 1306
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	6 cut(s)	57, 226, 772, 908, 1107, 1116
Kzo9I	GATC	1 cut(s)	316
LmnI	GCTCC	5 cut(s)	10, 746, 835, 934, 1150
Lsp1109I	GCAGC	4 cut(s)	57, 70, 703, 1009
LweI	GCATC	3 cut(s)	799, 981, 1000
MaeI	CTAG	3 cut(s)	645, 1007, 1302
MaeII	ACGT	1 cut(s)	195
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	7 cut(s)	65, 311, 344, 747, 797, 893, 1134
MhlI	GDGCHC	3 cut(s)	630, 686, 840
MluCI	AATT	6 cut(s)	297, 726, 849, 1064, 1125, 1279
MlyI	GAGTC	3 cut(s)	7, 176, 606
MmeI	TCCRAC	2 cut(s)	250, 508
MroXI	GAANNNNTTC	1 cut(s)	1126
MseI	TTAA	2 cut(s)	171, 509
MslI	CAYNNNNRTG	1 cut(s)	691
MspI	CCGG	2 cut(s)	311, 503
Mva1269I	GAATGC	1 cut(s)	1048
MvaI	CCWGG	8 cut(s)	9, 357, 489, 519, 732, 782, 833, 1193
MwoI	GCNNNNNNNGC	7 cut(s)	64, 440, 634, 713, 765, 1019, 1151
NciI	CCSGG	3 cut(s)	312, 503, 504
NcoI	CCATGG	1 cut(s)	53
NdeI	CATATG	1 cut(s)	560
NdeII	GATC	1 cut(s)	316
NheI	GCTAGC	1 cut(s)	644
NlaIII	CATG	6 cut(s)	57, 226, 772, 908, 1107, 1116
NlaIV	GGNNCC	6 cut(s)	6, 89, 348, 891, 1221, 1298
NspI	RCATGY	1 cut(s)	772
PaeI	GCATGC	1 cut(s)	772
PctI	GAATGC	1 cut(s)	1048
PdmI	GAANNNNTTC	1 cut(s)	1126
PfeI	GAWTC	4 cut(s)	498, 795, 910, 945
PfoI	TCCNGGA	3 cut(s)	355, 730, 831
PkrI	GCNGC	4 cut(s)	47, 60, 718, 999
PleI	GAGTC	3 cut(s)	7, 176, 605
PpsI	GAGTC	3 cut(s)	7, 176, 605
PpuMI	RGGWCCY	1 cut(s)	347
PsiI	TTATAA	1 cut(s)	854
Psp124BI	GAGCTC	1 cut(s)	840
Psp5II	RGGWCCY	1 cut(s)	347
Psp6I	CCWGG	8 cut(s)	7, 355, 487, 517, 730, 780, 831, 1191
PspGI	CCWGG	8 cut(s)	7, 355, 487, 517, 730, 780, 831, 1191
PspN4I	GGNNCC	6 cut(s)	6, 89, 348, 891, 1221, 1298
PspPI	GGNCC	4 cut(s)	272, 347, 636, 890
PspPPI	RGGWCCY	1 cut(s)	347
PstI	CTGCAG	2 cut(s)	190, 244
PstNI	CAGNNNCTG	1 cut(s)	110
RsaI	GTAC	2 cut(s)	1038, 1267
RsaNI	GTAC	2 cut(s)	1037, 1266
RseI	CAYNNNNRTG	1 cut(s)	691
SacI	GAGCTC	1 cut(s)	840
SalI	GTCGAC	1 cut(s)	1139
SaqAI	TTAA	2 cut(s)	171, 509
SatI	GCNGC	4 cut(s)	46, 59, 717, 998
Sau3AI	GATC	1 cut(s)	316
Sau96I	GGNCC	4 cut(s)	272, 347, 636, 890
ScaI	AGTACT	1 cut(s)	1038
SchI	GAGTC	3 cut(s)	7, 176, 606
SduI	GDGCHC	3 cut(s)	630, 686, 840
SfaNI	GCATC	3 cut(s)	799, 981, 1000
SfcI	CTRYAG	2 cut(s)	186, 240
SinI	GGWCC	2 cut(s)	272, 347
SmaI	CCCGGG	1 cut(s)	504
SmiMI	CAYNNNNRTG	1 cut(s)	691
SmlI	CTYRAG	2 cut(s)	584, 839
SmoI	CTYRAG	2 cut(s)	584, 839
SphI	GCATGC	1 cut(s)	772
Sse9I	AATT	6 cut(s)	297, 726, 849, 1064, 1125, 1279
SsiI	CCGC	1 cut(s)	1234
SspMI	CTAG	3 cut(s)	645, 1007, 1302
SstI	GAGCTC	1 cut(s)	840
StyI	CCWWGG	3 cut(s)	53, 639, 673
TaaI	ACNGT	2 cut(s)	83, 1018
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	4 cut(s)	936, 1050, 1140, 1201
TasI	AATT	6 cut(s)	297, 726, 849, 1064, 1125, 1279
TatI	WGTACW	2 cut(s)	1036, 1265
TfiI	GAWTC	4 cut(s)	498, 795, 910, 945
Tru1I	TTAA	2 cut(s)	171, 509
Tru9I	TTAA	2 cut(s)	171, 509
TscAI	CASTG	3 cut(s)	111, 766, 982
TseI	GCWGC	4 cut(s)	45, 58, 716, 997
TspDTI	ATGAA	4 cut(s)	211, 378, 881, 893
TspMI	CCCGGG	1 cut(s)	502
TspRI	CASTG	3 cut(s)	111, 766, 982
VneI	GTGCAC	1 cut(s)	626
VpaK11BI	GGWCC	2 cut(s)	272, 347
XagI	CCTNNNNNAGG	1 cut(s)	354
XapI	RAATTY	4 cut(s)	297, 1064, 1125, 1279
XceI	RCATGY	1 cut(s)	772
XcmI	CCANNNNNNNNNTGG	2 cut(s)	363, 788
XmaI	CCCGGG	1 cut(s)	502
XmiI	GTMKAC	3 cut(s)	150, 192, 1140
XmnI	GAANNNNTTC	1 cut(s)	1126
XspI	CTAG	3 cut(s)	645, 1007, 1302
ZrmI	AGTACT	1 cut(s)	1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.