Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014828

Physical Location & Seq

Genomic Coordinates Reverse (-)

22981884 .. 22983441

Gene Structure 1558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G225500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAGGCGGCGCCGAGCATCTGGTAGCTTAGTCCCACAGACATCTTCTCCTGCCATTGAAACAAGAGTAGACAATTCTGGATTAATTGAAGCGCAAGTAGGTAATCTGGTTGAGGACTTGAAAGGCACTTCTTTTGATGCTCAAAGAGATGCAACATTTGAACTCCGGCTGCTTGCAAAGCAGAGTATGGAAAATCGGATTGTTATTGCAAACTGTGGAGCCATTAGCTTGTTGGTGGACTTGCTCCGGTCTACAGACAAAAGGGTTCAAGAAAATGCTGTCACAACACTTCTGAACTTATCCATCAATGTTGAGAACAAGACAGAAATTACTGCTGCCAATGCAATTGAACCTCTGATTCATGTCCTTGAGACAGGCGGTGCTGAAGCCAAGGAAAACTCAGCTGCCACTCTCTTTAGCCTTTCGGTGATTGAGGACAACAAGGTTCGCATTGGAAGGTCAGGGGCTATTGGGCCTCTAGTTGATTTACTGGGGAATGGGACTCCCAGAGGGAGGAAAGATGCAGCCACAGCTTTGTTTAGTTTGTCAATTTTTCATGAGAACCGACGTCCAATAGTTCAAGCCGGTGCTATAAAGTACCTAGTGGAGTTGATGGATCCAGCAGCTGGACTGGTTGACAAGGTAGTGGCTGTTTTAGCCAATCTTTCTACAATACCTGAGGGAAAGACAGCAATTGGTCAGGAAGGTGGGATCCCTGGTCTGGTTGAAGCTGTTGAGTTGGGTTCTGCAAAAGGGAAAGAGCATGCAGCTGCTGCTCTTCTACAGCTCTGCACAAGTAGTGACAGATATTGCCGTATGGTGCAACAGGAAGGAGCTGTTCCGCCTTTAGTGGTATTGTCACAATATGGCACCCCAAGGGCCCAAAAAAAGGCAGAGTCACTCCTTAGAGTCTTAAGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

308

Amino Acids

32.62

Weight (kDa)

7.7

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014828)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G225500_v2.0.a1
pyrus_communis	pycom02g14680
rosa_chinensis	RchiOBHm_Chr2g0107221
rosa_laevigata	RLG00000017561
rosa_multiflora	Rmu_sc0021695.1_g000001 Rmu_ssc0000269.1_g000001 Rmu_ssc0000269.1_g000004
rosa_roxburghii	Rroxscaffold_2G00136530
rosa_rugosa	Rorug02G0141000
rosa_samantha	Rh2AG191700 Rh2AG191800 Rh2BG203700 Rh2CG196900 Rh2CG197000 Rh2DG199000 Rh2DG199100
rosa_wichuraiana	Rw2G015160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	571
AccB1I	GGYRCC	2 cut(s)	9, 869
AccB7I	CCANNNNNTGG	1 cut(s)	626
AccI	GTMKAC	2 cut(s)	69, 251
AciI	CCGC	3 cut(s)	7, 378, 842
AclWI	GGATC	4 cut(s)	611, 624, 706, 719
AcuI	CTGAAG	1 cut(s)	405
AcyI	GRCGYC	2 cut(s)	10, 568
AfaI	GTAC	1 cut(s)	599
AfiI	CCNNNNNNNGG	4 cut(s)	513, 626, 721, 889
AflII	CTTAAG	1 cut(s)	913
AgsI	TTSAA	8 cut(s)	59, 89, 121, 161, 269, 350, 581, 728
AjnI	CCWGG	1 cut(s)	715
AluBI	AGCT	9 cut(s)	27, 228, 404, 533, 626, 731, 770, 787, 836
AluI	AGCT	9 cut(s)	27, 228, 404, 533, 626, 731, 770, 787, 836
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	4 cut(s)	611, 624, 706, 719
AlwNI	CAGNNNCTG	2 cut(s)	626, 773
AoxI	GGCC	2 cut(s)	473, 879
ApaI	GGGCCC	1 cut(s)	883
ApeKI	GCWGC	8 cut(s)	169, 335, 404, 524, 623, 767, 770, 773
AseI	ATTAAT	1 cut(s)	83
AspLEI	GCGC	2 cut(s)	12, 94
AspS9I	GGNCC	3 cut(s)	473, 879, 880
AsuHPI	GGTGA	1 cut(s)	439
AxyI	CCTNAGG	1 cut(s)	678
BaeGI	GKGCMC	1 cut(s)	883
BamHI	GGATCC	2 cut(s)	616, 711
BanI	GGYRCC	2 cut(s)	9, 869
BanII	GRGCYC	1 cut(s)	883
BbvI	GCAGC	8 cut(s)	156, 322, 391, 536, 635, 757, 760, 779
BccI	CCATC	2 cut(s)	311, 607
BceAI	ACGGC	1 cut(s)	798
BciT130I	CCWGG	1 cut(s)	717
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	2 cut(s)	479, 602
BfmI	CTRYAG	2 cut(s)	252, 782
BfoI	RGCGCY	1 cut(s)	13
BfrI	CTTAAG	1 cut(s)	913
BisI	GCNGC	9 cut(s)	8, 170, 336, 405, 525, 624, 768, 771, 774
BlsI	GCNGC	9 cut(s)	9, 171, 337, 406, 526, 625, 769, 772, 775
Bme1390I	CCNGG	1 cut(s)	717
BmgT120I	GGNCC	3 cut(s)	473, 879, 880
BmiI	GGNNCC	6 cut(s)	11, 220, 618, 713, 871, 881
BmrFI	CCNGG	1 cut(s)	717
BmrI	ACTGGG	1 cut(s)	500
BmsI	GCATC	4 cut(s)	26, 127, 139, 511
BmuI	ACTGGG	1 cut(s)	500
BpuEI	CTTGAG	1 cut(s)	389
BsaHI	GRCGYC	2 cut(s)	10, 568
BsaJI	CCNNGG	3 cut(s)	390, 715, 875
BsaWI	WCCGGW	1 cut(s)	246
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	4 cut(s)	513, 626, 721, 889
Bse118I	RCCGGY	1 cut(s)	584
Bse1I	ACTGG	2 cut(s)	495, 636
Bse21I	CCTNAGG	1 cut(s)	678
BseBI	CCWGG	1 cut(s)	717
BseDI	CCNNGG	3 cut(s)	390, 715, 875
BseLI	CCNNNNNNNGG	4 cut(s)	513, 626, 721, 889
BseMII	CTCAG	2 cut(s)	414, 669
BseNI	ACTGG	2 cut(s)	495, 636
BseSI	GKGCMC	1 cut(s)	883
BseXI	GCAGC	8 cut(s)	156, 322, 391, 536, 635, 757, 760, 779
BsgI	GTGCAG	1 cut(s)	775
BshFI	GGCC	2 cut(s)	475, 881
BshNI	GGYRCC	2 cut(s)	9, 869
BsiSI	CCGG	3 cut(s)	166, 247, 585
BslFI	GGGAC	2 cut(s)	17, 514
BslI	CCNNNNNNNGG	4 cut(s)	513, 626, 721, 889
BsmAI	GTCTC	1 cut(s)	365
BsmFI	GGGAC	2 cut(s)	17, 514
BsnI	GGCC	2 cut(s)	475, 881
Bsp120I	GGGCCC	1 cut(s)	879
Bsp1286I	GDGCHC	1 cut(s)	883
Bsp143I	GATC	2 cut(s)	616, 711
BspACI	CCGC	3 cut(s)	7, 378, 842
BspANI	GGCC	2 cut(s)	475, 881
BspCNI	CTCAG	2 cut(s)	413, 670
BspHI	TCATGA	1 cut(s)	556
BspLI	GGNNCC	6 cut(s)	11, 220, 618, 713, 871, 881
BspPI	GGATC	4 cut(s)	611, 624, 706, 719
BspQI	GCTCTTC	1 cut(s)	783
BspT107I	GGYRCC	2 cut(s)	9, 869
BspTI	CTTAAG	1 cut(s)	913
BsrFI	RCCGGY	1 cut(s)	584
BsrI	ACTGG	2 cut(s)	495, 636
BssAI	RCCGGY	1 cut(s)	584
BssECI	CCNNGG	3 cut(s)	390, 715, 875
BssMI	GATC	2 cut(s)	616, 711
BssNI	GRCGYC	2 cut(s)	10, 568
BssT1I	CCWWGG	2 cut(s)	390, 875
Bst2UI	CCWGG	1 cut(s)	717
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	783
BstACI	GRCGYC	2 cut(s)	10, 568
BstAFI	CTTAAG	1 cut(s)	913
BstAPI	GCANNNNNTGC	1 cut(s)	773
BstC8I	GCNNGC	2 cut(s)	174, 765
BstDEI	CTNAG	4 cut(s)	28, 400, 678, 905
BstH2I	RGCGCY	1 cut(s)	13
BstHHI	GCGC	2 cut(s)	12, 94
BstKTI	GATC	2 cut(s)	619, 714
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	2 cut(s)	616, 711
BstMWI	GCNNNNNNNGC	5 cut(s)	178, 341, 530, 656, 773
BstNI	CCWGG	1 cut(s)	717
BstNSI	RCATGY	1 cut(s)	767
BstSCI	CCNGG	1 cut(s)	715
BstSFI	CTRYAG	2 cut(s)	252, 782
BstSLI	GKGCMC	1 cut(s)	883
BstV1I	GCAGC	8 cut(s)	156, 322, 391, 536, 635, 757, 760, 779
BstX2I	RGATCY	2 cut(s)	616, 711
BstYI	RGATCY	2 cut(s)	616, 711
Bsu36I	CCTNAGG	1 cut(s)	678
BsuRI	GGCC	2 cut(s)	475, 881
Cac8I	GCNNGC	2 cut(s)	174, 765
CaiI	CAGNNNCTG	2 cut(s)	626, 773
CciI	TCATGA	1 cut(s)	556
CfoI	GCGC	2 cut(s)	12, 94
Cfr10I	RCCGGY	1 cut(s)	584
Cfr13I	GGNCC	3 cut(s)	473, 879, 880
Csp6I	GTAC	1 cut(s)	598
CviAII	CATG	3 cut(s)	362, 557, 764
CviQI	GTAC	1 cut(s)	598
DdeI	CTNAG	4 cut(s)	28, 400, 678, 905
DinI	GGCGCC	1 cut(s)	11
DpnI	GATC	2 cut(s)	618, 713
DpnII	GATC	2 cut(s)	616, 711
Eam1104I	CTCTTC	1 cut(s)	783
EarI	CTCTTC	1 cut(s)	783
EciI	GGCGGA	1 cut(s)	831
Eco130I	CCWWGG	2 cut(s)	390, 875
Eco24I	GRGCYC	1 cut(s)	883
Eco57I	CTGAAG	1 cut(s)	405
Eco81I	CCTNAGG	1 cut(s)	678
EcoO109I	RGGNCCY	1 cut(s)	879
EcoRII	CCWGG	1 cut(s)	715
EcoT14I	CCWWGG	2 cut(s)	390, 875
EcoT38I	GRGCYC	1 cut(s)	883
EgeI	GGCGCC	1 cut(s)	11
EheI	GGCGCC	1 cut(s)	11
ErhI	CCWWGG	2 cut(s)	390, 875
FaeI	CATG	3 cut(s)	365, 560, 767
FaiI	YATR	7 cut(s)	188, 363, 558, 593, 765, 818, 867
FaqI	GGGAC	2 cut(s)	17, 514
FatI	CATG	3 cut(s)	361, 556, 763
FblI	GTMKAC	2 cut(s)	69, 251
Fnu4HI	GCNGC	9 cut(s)	8, 170, 336, 405, 525, 624, 768, 771, 774
FriOI	GRGCYC	1 cut(s)	883
Fsp4HI	GCNGC	9 cut(s)	8, 170, 336, 405, 525, 624, 768, 771, 774
FspBI	CTAG	2 cut(s)	479, 602
GlaI	GCGC	2 cut(s)	11, 93
GluI	GCNGC	9 cut(s)	8, 170, 336, 405, 525, 624, 768, 771, 774
HaeII	RGCGCY	1 cut(s)	13
HaeIII	GGCC	2 cut(s)	475, 881
HapII	CCGG	3 cut(s)	166, 247, 585
HhaI	GCGC	2 cut(s)	12, 94
Hin1I	GRCGYC	2 cut(s)	10, 568
Hin1II	CATG	3 cut(s)	365, 560, 767
Hin6I	GCGC	2 cut(s)	10, 92
HinP1I	GCGC	2 cut(s)	10, 92
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HinfI	GANTC	4 cut(s)	358, 502, 896, 909
HpaII	CCGG	3 cut(s)	166, 247, 585
HphI	GGTGA	1 cut(s)	439
Hpy166II	GTNNAC	4 cut(s)	70, 238, 252, 637
Hpy188I	TCNGA	3 cut(s)	198, 294, 357
Hpy188III	TCNNGA	4 cut(s)	78, 269, 557, 701
Hpy8I	GTNNAC	4 cut(s)	70, 238, 252, 637
Hpy99I	CGWCG	1 cut(s)	570
HpyAV	CCTTC	3 cut(s)	450, 698, 824
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	1 cut(s)	568
HpyCH4V	TGCA	9 cut(s)	152, 176, 209, 344, 524, 749, 767, 792, 823
HpyF10VI	GCNNNNNNNGC	5 cut(s)	178, 341, 530, 656, 773
HpyF3I	CTNAG	4 cut(s)	28, 400, 678, 905
HpySE526I	ACGT	1 cut(s)	568
Hsp92I	GRCGYC	2 cut(s)	10, 568
Hsp92II	CATG	3 cut(s)	365, 560, 767
HspAI	GCGC	2 cut(s)	10, 92
KasI	GGCGCC	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	616, 711
LguI	GCTCTTC	1 cut(s)	783
LmnI	GCTCC	3 cut(s)	218, 249, 833
Lsp1109I	GCAGC	8 cut(s)	156, 322, 391, 536, 635, 757, 760, 779
LweI	GCATC	4 cut(s)	26, 127, 139, 511
MaeI	CTAG	2 cut(s)	479, 602
MaeII	ACGT	1 cut(s)	568
MaeIII	GTNAC	4 cut(s)	280, 800, 858, 897
MalI	GATC	2 cut(s)	618, 713
MboI	GATC	2 cut(s)	616, 711
MboII	GAAGA	2 cut(s)	36, 770
MfeI	CAATTG	2 cut(s)	345, 693
MflI	RGATCY	2 cut(s)	616, 711
MhlI	GDGCHC	1 cut(s)	883
MluCI	AATT	6 cut(s)	73, 84, 327, 345, 549, 693
Mly113I	GGCGCC	1 cut(s)	10
MlyI	GAGTC	3 cut(s)	496, 905, 918
MnlI	CCTC	7 cut(s)	106, 363, 427, 486, 503, 507, 673
MseI	TTAA	2 cut(s)	83, 914
MspA1I	CMGCKG	3 cut(s)	404, 626, 770
MspCI	CTTAAG	1 cut(s)	913
MspI	CCGG	3 cut(s)	166, 247, 585
MspR9I	CCNGG	1 cut(s)	717
MunI	CAATTG	2 cut(s)	345, 693
MvaI	CCWGG	1 cut(s)	717
MwoI	GCNNNNNNNGC	5 cut(s)	178, 341, 530, 656, 773
NarI	GGCGCC	1 cut(s)	10
NdeII	GATC	2 cut(s)	616, 711
NlaIII	CATG	3 cut(s)	365, 560, 767
NlaIV	GGNNCC	6 cut(s)	11, 220, 618, 713, 871, 881
NmeAIII	GCCGAG	1 cut(s)	38
NmuCI	GTSAC	4 cut(s)	280, 800, 858, 897
NspI	RCATGY	1 cut(s)	767
PaeI	GCATGC	1 cut(s)	767
PagI	TCATGA	1 cut(s)	556
PciSI	GCTCTTC	1 cut(s)	783
PfeI	GAWTC	1 cut(s)	358
PflMI	CCANNNNNTGG	1 cut(s)	626
PkrI	GCNGC	9 cut(s)	9, 171, 337, 406, 526, 625, 769, 772, 775
PleI	GAGTC	3 cut(s)	496, 904, 917
PluTI	GGCGCC	1 cut(s)	13
PpsI	GAGTC	3 cut(s)	496, 904, 917
PshBI	ATTAAT	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	715
PspGI	CCWGG	1 cut(s)	715
PspN4I	GGNNCC	6 cut(s)	11, 220, 618, 713, 871, 881
PspOMI	GGGCCC	1 cut(s)	879
PspPI	GGNCC	3 cut(s)	473, 879, 880
PstNI	CAGNNNCTG	2 cut(s)	626, 773
PsuI	RGATCY	2 cut(s)	616, 711
PvuII	CAGCTG	3 cut(s)	404, 626, 770
RsaI	GTAC	1 cut(s)	599
RsaNI	GTAC	1 cut(s)	598
SapI	GCTCTTC	1 cut(s)	783
SaqAI	TTAA	2 cut(s)	83, 914
SatI	GCNGC	9 cut(s)	8, 170, 336, 405, 525, 624, 768, 771, 774
Sau3AI	GATC	2 cut(s)	616, 711
Sau96I	GGNCC	3 cut(s)	473, 879, 880
SchI	GAGTC	3 cut(s)	496, 905, 918
ScrFI	CCNGG	1 cut(s)	717
SduI	GDGCHC	1 cut(s)	883
SfaNI	GCATC	4 cut(s)	26, 127, 139, 511
SfcI	CTRYAG	2 cut(s)	252, 782
SfoI	GGCGCC	1 cut(s)	11
SmlI	CTYRAG	2 cut(s)	368, 913
SmoI	CTYRAG	2 cut(s)	368, 913
SphI	GCATGC	1 cut(s)	767
Sse9I	AATT	6 cut(s)	73, 84, 327, 345, 549, 693
SsiI	CCGC	3 cut(s)	7, 378, 842
SspDI	GGCGCC	1 cut(s)	9
SspMI	CTAG	2 cut(s)	479, 602
StyD4I	CCNGG	1 cut(s)	715
StyI	CCWWGG	2 cut(s)	390, 875
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	1 cut(s)	571
TasI	AATT	6 cut(s)	73, 84, 327, 345, 549, 693
TauI	GCSGC	1 cut(s)	10
TfiI	GAWTC	1 cut(s)	358
Tru1I	TTAA	2 cut(s)	83, 914
Tru9I	TTAA	2 cut(s)	83, 914
TseFI	GTSAC	4 cut(s)	280, 800, 858, 897
TseI	GCWGC	8 cut(s)	169, 335, 404, 524, 623, 767, 770, 773
Tsp45I	GTSAC	4 cut(s)	280, 800, 858, 897
TspDTI	ATGAA	2 cut(s)	350, 545
Van91I	CCANNNNNTGG	1 cut(s)	626
Vha464I	CTTAAG	1 cut(s)	913
VspI	ATTAAT	1 cut(s)	83
XceI	RCATGY	1 cut(s)	767
XcmI	CCANNNNNNNNNTGG	1 cut(s)	229
XmiI	GTMKAC	2 cut(s)	69, 251
XspI	CTAG	2 cut(s)	479, 602
ZraI	GACGTC	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.