RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| prunus_persica | Prupe.6G225500_v2.0.a1 |
| pyrus_communis | pycom02g14680 |
| rosa_chinensis | RchiOBHm_Chr2g0107221 |
| rosa_laevigata | RLG00000017561 |
| rosa_multiflora | Rmu_sc0021695.1_g000001 Rmu_ssc0000269.1_g000001 Rmu_ssc0000269.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00136530 |
| rosa_rugosa | Rorug02G0141000 |
| rosa_samantha | Rh2AG191700 Rh2AG191800 Rh2BG203700 Rh2CG196900 Rh2CG197000 Rh2DG199000 Rh2DG199100 |
| rosa_wichuraiana | Rw2G015160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 106 |
| AcuI | CTGAAG | 2 cut(s) | 36, 143 |
| AfaI | GTAC | 1 cut(s) | 267 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 106 |
| AgsI | TTSAA | 1 cut(s) | 113 |
| AjnI | CCWGG | 1 cut(s) | 434 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 25, 57 |
| AluBI | AGCT | 6 cut(s) | 71, 163, 228, 249, 407, 531 |
| AluI | AGCT | 6 cut(s) | 71, 163, 228, 249, 407, 531 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 106 |
| AoxI | GGCC | 1 cut(s) | 476 |
| ApeKI | GCWGC | 3 cut(s) | 338, 407, 528 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 81, 113 |
| AspLEI | GCGC | 1 cut(s) | 9 |
| AspS9I | GGNCC | 1 cut(s) | 462 |
| AvaII | GGWCC | 1 cut(s) | 462 |
| BbvI | GCAGC | 3 cut(s) | 325, 394, 540 |
| BciT130I | CCWGG | 1 cut(s) | 436 |
| BfaI | CTAG | 2 cut(s) | 482, 494 |
| BfmI | CTRYAG | 1 cut(s) | 532 |
| BisI | GCNGC | 3 cut(s) | 339, 408, 529 |
| BlpI | GCTNAGC | 1 cut(s) | 245 |
| BlsI | GCNGC | 3 cut(s) | 340, 409, 530 |
| Bme1390I | CCNGG | 1 cut(s) | 436 |
| Bme18I | GGWCC | 1 cut(s) | 462 |
| BmgT120I | GGNCC | 1 cut(s) | 462 |
| BmiI | GGNNCC | 1 cut(s) | 220 |
| BmrFI | CCNGG | 1 cut(s) | 436 |
| BmsI | GCATC | 2 cut(s) | 23, 515 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 60, 92 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 245 |
| BpuEI | CTTGAG | 2 cut(s) | 62, 392 |
| BsaJI | CCNNGG | 4 cut(s) | 32, 342, 435, 465 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 147, 177 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 106 |
| Bse3DI | GCAATG | 1 cut(s) | 63 |
| BseBI | CCWGG | 1 cut(s) | 436 |
| BseDI | CCNNGG | 4 cut(s) | 32, 342, 435, 465 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 106 |
| BseMI | GCAATG | 1 cut(s) | 63 |
| BseMII | CTCAG | 1 cut(s) | 417 |
| BseXI | GCAGC | 3 cut(s) | 325, 394, 540 |
| BshFI | GGCC | 1 cut(s) | 478 |
| BslFI | GGGAC | 1 cut(s) | 14 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 106 |
| BsmFI | GGGAC | 1 cut(s) | 14 |
| BsnI | GGCC | 1 cut(s) | 478 |
| Bsp143I | GATC | 2 cut(s) | 303, 321 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 245 |
| BspANI | GGCC | 1 cut(s) | 478 |
| BspCNI | CTCAG | 1 cut(s) | 416 |
| BspLI | GGNNCC | 1 cut(s) | 220 |
| BsrDI | GCAATG | 1 cut(s) | 63 |
| BssECI | CCNNGG | 4 cut(s) | 32, 342, 435, 465 |
| BssMI | GATC | 2 cut(s) | 303, 321 |
| BssT1I | CCWWGG | 3 cut(s) | 32, 342, 465 |
| Bst2UI | CCWGG | 1 cut(s) | 436 |
| Bst4CI | ACNGT | 2 cut(s) | 41, 215 |
| Bst6I | CTCTTC | 1 cut(s) | 108 |
| BstDEI | CTNAG | 3 cut(s) | 245, 403, 509 |
| BstHHI | GCGC | 1 cut(s) | 9 |
| BstKTI | GATC | 2 cut(s) | 306, 324 |
| BstMBI | GATC | 2 cut(s) | 303, 321 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 284, 338, 344, 534 |
| BstNI | CCWGG | 1 cut(s) | 436 |
| BstSCI | CCNGG | 1 cut(s) | 434 |
| BstSFI | CTRYAG | 1 cut(s) | 532 |
| BstV1I | GCAGC | 3 cut(s) | 325, 394, 540 |
| BsuRI | GGCC | 1 cut(s) | 478 |
| CaiI | CAGNNNCTG | 1 cut(s) | 106 |
| CfoI | GCGC | 1 cut(s) | 9 |
| Cfr13I | GGNCC | 1 cut(s) | 462 |
| Csp6I | GTAC | 1 cut(s) | 266 |
| CviAII | CATG | 3 cut(s) | 122, 187, 365 |
| CviQI | GTAC | 1 cut(s) | 266 |
| DdeI | CTNAG | 3 cut(s) | 245, 403, 509 |
| DpnI | GATC | 2 cut(s) | 305, 323 |
| DpnII | GATC | 2 cut(s) | 303, 321 |
| Eam1104I | CTCTTC | 1 cut(s) | 108 |
| EarI | CTCTTC | 1 cut(s) | 108 |
| Eco130I | CCWWGG | 3 cut(s) | 32, 342, 465 |
| Eco147I | AGGCCT | 1 cut(s) | 478 |
| Eco47I | GGWCC | 1 cut(s) | 462 |
| Eco57I | CTGAAG | 2 cut(s) | 36, 143 |
| EcoRII | CCWGG | 1 cut(s) | 434 |
| EcoT14I | CCWWGG | 3 cut(s) | 32, 342, 465 |
| ErhI | CCWWGG | 3 cut(s) | 32, 342, 465 |
| FaeI | CATG | 3 cut(s) | 125, 190, 368 |
| FaiI | YATR | 6 cut(s) | 11, 123, 183, 188, 224, 366 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 141, 173 |
| FaqI | GGGAC | 1 cut(s) | 14 |
| FatI | CATG | 3 cut(s) | 121, 186, 364 |
| Fnu4HI | GCNGC | 3 cut(s) | 339, 408, 529 |
| Fsp4HI | GCNGC | 3 cut(s) | 339, 408, 529 |
| FspBI | CTAG | 2 cut(s) | 482, 494 |
| GlaI | GCGC | 1 cut(s) | 8 |
| GluI | GCNGC | 3 cut(s) | 339, 408, 529 |
| HaeIII | GGCC | 1 cut(s) | 478 |
| HhaI | GCGC | 1 cut(s) | 9 |
| Hin1II | CATG | 3 cut(s) | 125, 190, 368 |
| Hin6I | GCGC | 1 cut(s) | 7 |
| HinP1I | GCGC | 1 cut(s) | 7 |
| HindIII | AAGCTT | 1 cut(s) | 226 |
| HinfI | GANTC | 4 cut(s) | 84, 103, 353, 505 |
| Hpy188I | TCNGA | 4 cut(s) | 167, 198, 326, 453 |
| Hpy188III | TCNNGA | 1 cut(s) | 100 |
| HpyAV | CCTTC | 2 cut(s) | 60, 453 |
| HpyCH4III | ACNGT | 2 cut(s) | 41, 215 |
| HpyCH4V | TGCA | 2 cut(s) | 209, 528 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 284, 338, 344, 534 |
| HpyF3I | CTNAG | 3 cut(s) | 245, 403, 509 |
| Hsp92II | CATG | 3 cut(s) | 125, 190, 368 |
| HspAI | GCGC | 1 cut(s) | 7 |
| Kzo9I | GATC | 2 cut(s) | 303, 321 |
| LmnI | GCTCC | 2 cut(s) | 168, 218 |
| LpnPI | CCDG | 6 cut(s) | 3, 58, 92, 113, 421, 448 |
| Lsp1109I | GCAGC | 3 cut(s) | 325, 394, 540 |
| LweI | GCATC | 2 cut(s) | 23, 515 |
| MaeI | CTAG | 2 cut(s) | 482, 494 |
| MaeIII | GTNAC | 3 cut(s) | 117, 280, 489 |
| MalI | GATC | 2 cut(s) | 305, 323 |
| MboI | GATC | 2 cut(s) | 303, 321 |
| MboII | GAAGA | 1 cut(s) | 125 |
| MfeI | CAATTG | 1 cut(s) | 348 |
| MluCI | AATT | 2 cut(s) | 327, 348 |
| MlyI | GAGTC | 3 cut(s) | 93, 362, 514 |
| MmeI | TCCRAC | 1 cut(s) | 190 |
| MnlI | CCTC | 4 cut(s) | 86, 382, 489, 506 |
| MseI | TTAA | 1 cut(s) | 294 |
| MspA1I | CMGCKG | 1 cut(s) | 407 |
| MspR9I | CCNGG | 1 cut(s) | 436 |
| MunI | CAATTG | 1 cut(s) | 348 |
| MvaI | CCWGG | 1 cut(s) | 436 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 284, 338, 344, 534 |
| NdeII | GATC | 2 cut(s) | 303, 321 |
| NlaIII | CATG | 3 cut(s) | 125, 190, 368 |
| NlaIV | GGNNCC | 1 cut(s) | 220 |
| NmuCI | GTSAC | 1 cut(s) | 280 |
| PceI | AGGCCT | 1 cut(s) | 478 |
| PfeI | GAWTC | 1 cut(s) | 103 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 106 |
| PkrI | GCNGC | 3 cut(s) | 340, 409, 530 |
| PleI | GAGTC | 3 cut(s) | 92, 361, 513 |
| PpsI | GAGTC | 3 cut(s) | 92, 361, 513 |
| Psp6I | CCWGG | 1 cut(s) | 434 |
| PspGI | CCWGG | 1 cut(s) | 434 |
| PspN4I | GGNNCC | 1 cut(s) | 220 |
| PspPI | GGNCC | 1 cut(s) | 462 |
| PstNI | CAGNNNCTG | 1 cut(s) | 106 |
| PvuII | CAGCTG | 1 cut(s) | 407 |
| RsaI | GTAC | 1 cut(s) | 267 |
| RsaNI | GTAC | 1 cut(s) | 266 |
| SaqAI | TTAA | 1 cut(s) | 294 |
| SatI | GCNGC | 3 cut(s) | 339, 408, 529 |
| Sau3AI | GATC | 2 cut(s) | 303, 321 |
| Sau96I | GGNCC | 1 cut(s) | 462 |
| SchI | GAGTC | 3 cut(s) | 93, 362, 514 |
| ScrFI | CCNGG | 1 cut(s) | 436 |
| SfaNI | GCATC | 2 cut(s) | 23, 515 |
| SfcI | CTRYAG | 1 cut(s) | 532 |
| SinI | GGWCC | 1 cut(s) | 462 |
| SmlI | CTYRAG | 2 cut(s) | 77, 371 |
| SmoI | CTYRAG | 2 cut(s) | 77, 371 |
| Sse9I | AATT | 2 cut(s) | 327, 348 |
| SseBI | AGGCCT | 1 cut(s) | 478 |
| SspMI | CTAG | 2 cut(s) | 482, 494 |
| StuI | AGGCCT | 1 cut(s) | 478 |
| StyD4I | CCNGG | 1 cut(s) | 434 |
| StyI | CCWWGG | 3 cut(s) | 32, 342, 465 |
| TaaI | ACNGT | 2 cut(s) | 41, 215 |
| TaqI | TCGA | 2 cut(s) | 302, 428 |
| TasI | AATT | 2 cut(s) | 327, 348 |
| TfiI | GAWTC | 1 cut(s) | 103 |
| Tru1I | TTAA | 1 cut(s) | 294 |
| Tru9I | TTAA | 1 cut(s) | 294 |
| TseFI | GTSAC | 1 cut(s) | 280 |
| TseI | GCWGC | 3 cut(s) | 338, 407, 528 |
| Tsp45I | GTSAC | 1 cut(s) | 280 |
| TspDTI | ATGAA | 2 cut(s) | 203, 353 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 106 |
| VpaK11BI | GGWCC | 1 cut(s) | 462 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 229 |
| XspI | CTAG | 2 cut(s) | 482, 494 |