Rorug02G0141000

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014828
Physical Location & Seq
Reverse (-)
12402849 .. 12403385
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0141000.1

Sequence Viewer

Length: 537 bp
ATGCACATCTTCTCATCAAAAGCCAACACTTGGAAAAGGACTGAAGCCCCTCTCGACTTTGACTTTGATTTTGCGGGGACTCTGTCAAATGAGGTACTCCATTGGCCGGACAACCTTGGCATCTTTGCTTTTGATTTAGCAAGGGAGGAGTTCCGAAGAATGCCGCTGCCTATTCTAGGTGGTGAGGTTAGGCATGTCAGGGCTTTCGGAGACTGTCTGTGTGCGTTTGATTTTGCAAATCTTGATACTGCTGGATCCATTGATTTGTGGGTGATGAAAAAATATGGCGTGGCTGACTCATGGACGAAGCTCTTTAACTTAAAGGTTTCCAATCAGCCTGAGAAGATACGTTATTGCTTGCCAGTCTCGATAATGGAAACTAGTACATTTCTGCACAAAGTGGTTAGATTCCGTGATGGGATGTTTATAACTTTGATAAGGATTGGTCATACGAAACAGAAGCCTGAAATGCATGTGTTGAACAGGAGGACAGATATCATCGAAAGGAAAATGATTTGTGGCCTCAATGAGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm U-box

Protein Analysis

178

Amino Acids

20.6

Weight (kDa)

8.37

Isoelectric Point (pI)

46.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 2 - 131 2.5e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 428
AccB7I CCANNNNNTGG 1 cut(s) 30
AciI CCGC 2 cut(s) 74, 164
AclWI GGATC 2 cut(s) 249, 262
AcoI YGGCCR 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 63
AdeI CACNNNGTG 1 cut(s) 400
AfaI GTAC 2 cut(s) 96, 385
AfiI CCNNNNNNNGG 4 cut(s) 30, 106, 176, 529
AgsI TTSAA 1 cut(s) 481
AhlI ACTAGT 1 cut(s) 380
AluBI AGCT 1 cut(s) 310
AluI AGCT 1 cut(s) 310
Alw26I GTCTC 2 cut(s) 204, 370
AlwI GGATC 2 cut(s) 249, 262
AoxI GGCC 3 cut(s) 104, 520, 531
ApeKI GCWGC 1 cut(s) 166
ArsI GACNNNNNNTTYG 4 cut(s) 47, 53, 79, 85
AsuHPI GGTGA 2 cut(s) 194, 283
BamHI GGATCC 1 cut(s) 254
BbvI GCAGC 1 cut(s) 153
BccI CCATC 1 cut(s) 410
BcoDI GTCTC 2 cut(s) 204, 370
BcuI ACTAGT 1 cut(s) 380
BfaI CTAG 2 cut(s) 176, 381
BisI GCNGC 2 cut(s) 164, 167
BlsI GCNGC 2 cut(s) 165, 168
BmiI GGNNCC 1 cut(s) 256
BmsI GCATC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 115
Bsc4I CCNNNNNNNGG 4 cut(s) 30, 106, 176, 529
Bse1I ACTGG 1 cut(s) 362
BseDI CCNNGG 1 cut(s) 115
BseGI GGATG 1 cut(s) 426
BseLI CCNNNNNNNGG 4 cut(s) 30, 106, 176, 529
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 1 cut(s) 362
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 153
BsgI GTGCAG 1 cut(s) 377
BshFI GGCC 3 cut(s) 106, 522, 533
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 91
BslI CCNNNNNNNGG 4 cut(s) 30, 106, 176, 529
BsmAI GTCTC 2 cut(s) 204, 370
BsmFI GGGAC 1 cut(s) 91
BsmI GAATGC 1 cut(s) 165
BsnI GGCC 3 cut(s) 106, 522, 533
Bsp143I GATC 1 cut(s) 254
BspACI CCGC 2 cut(s) 74, 164
BspANI GGCC 3 cut(s) 106, 522, 533
BspCNI CTCAG 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 256
BspPI GGATC 2 cut(s) 249, 262
BsrI ACTGG 1 cut(s) 362
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 1 cut(s) 254
BssT1I CCWWGG 1 cut(s) 115
Bst4CI ACNGT 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 359
BstDEI CTNAG 1 cut(s) 339
BstENI CCTNNNNNAGG 2 cut(s) 174, 527
BstF5I GGATG 1 cut(s) 426
BstKTI GATC 1 cut(s) 257
BstMAI GTCTC 2 cut(s) 204, 370
BstMBI GATC 1 cut(s) 254
BstMWI GCNNNNNNNGC 1 cut(s) 469
BstNSI RCATGY 2 cut(s) 197, 476
BstV1I GCAGC 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BsuRI GGCC 3 cut(s) 106, 522, 533
BtsCI GGATG 1 cut(s) 426
Cac8I GCNNGC 1 cut(s) 359
Csp6I GTAC 2 cut(s) 95, 384
CviAII CATG 3 cut(s) 194, 300, 473
CviQI GTAC 2 cut(s) 95, 384
DdeI CTNAG 1 cut(s) 339
DpnI GATC 1 cut(s) 256
DpnII GATC 1 cut(s) 254
DraIII CACNNNGTG 1 cut(s) 400
EaeI YGGCCR 1 cut(s) 104
Eco130I CCWWGG 1 cut(s) 115
Eco147I AGGCCT 1 cut(s) 533
Eco32I GATATC 1 cut(s) 496
Eco57I CTGAAG 1 cut(s) 63
EcoNI CCTNNNNNAGG 2 cut(s) 174, 527
EcoRV GATATC 1 cut(s) 496
EcoT14I CCWWGG 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 3 cut(s) 197, 303, 476
FaiI YATR 6 cut(s) 195, 285, 301, 428, 450, 474
FaqI GGGAC 1 cut(s) 91
FatI CATG 3 cut(s) 193, 299, 472
FauI CCCGC 1 cut(s) 67
Fnu4HI GCNGC 2 cut(s) 164, 167
FokI GGATG 1 cut(s) 433
Fsp4HI GCNGC 2 cut(s) 164, 167
FspBI CTAG 2 cut(s) 176, 381
GluI GCNGC 2 cut(s) 164, 167
HaeIII GGCC 3 cut(s) 106, 522, 533
HapII CCGG 1 cut(s) 107
Hin1II CATG 3 cut(s) 197, 303, 476
HinfI GANTC 3 cut(s) 79, 296, 408
HpaII CCGG 1 cut(s) 107
HphI GGTGA 2 cut(s) 194, 283
Hpy188I TCNGA 2 cut(s) 155, 209
Hpy188III TCNNGA 3 cut(s) 53, 242, 367
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4IV ACGT 1 cut(s) 349
HpyCH4V TGCA 4 cut(s) 4, 236, 394, 472
HpyF10VI GCNNNNNNNGC 1 cut(s) 469
HpyF3I CTNAG 1 cut(s) 339
HpySE526I ACGT 1 cut(s) 349
Hsp92II CATG 3 cut(s) 197, 303, 476
Kzo9I GATC 1 cut(s) 254
LpnPI CCDG 7 cut(s) 120, 184, 237, 351, 375, 469, 477
Lsp1109I GCAGC 1 cut(s) 153
LweI GCATC 1 cut(s) 129
MaeI CTAG 2 cut(s) 176, 381
MaeII ACGT 1 cut(s) 349
MalI GATC 1 cut(s) 256
MboI GATC 1 cut(s) 254
MboII GAAGA 2 cut(s) 168, 355
MflI RGATCY 1 cut(s) 254
MlyI GAGTC 2 cut(s) 73, 290
MnlI CCTC 7 cut(s) 60, 85, 139, 178, 480, 523, 533
Mph1103I ATGCAT 1 cut(s) 474
MseI TTAA 2 cut(s) 315, 320
MspA1I CMGCKG 1 cut(s) 166
MspI CCGG 1 cut(s) 107
Mva1269I GAATGC 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 469
NdeII GATC 1 cut(s) 254
NlaIII CATG 3 cut(s) 197, 303, 476
NlaIV GGNNCC 1 cut(s) 256
NsiI ATGCAT 1 cut(s) 474
NspI RCATGY 2 cut(s) 197, 476
PceI AGGCCT 1 cut(s) 533
PctI GAATGC 1 cut(s) 165
PfeI GAWTC 1 cut(s) 408
PflFI GACNNNGTC 1 cut(s) 82
PflMI CCANNNNNTGG 1 cut(s) 30
PkrI GCNGC 2 cut(s) 165, 168
PleI GAGTC 2 cut(s) 73, 290
PpsI GAGTC 2 cut(s) 73, 290
PsiI TTATAA 1 cut(s) 428
PspN4I GGNNCC 1 cut(s) 256
PsuI RGATCY 1 cut(s) 254
PsyI GACNNNGTC 1 cut(s) 82
RsaI GTAC 2 cut(s) 96, 385
RsaNI GTAC 2 cut(s) 95, 384
SaqAI TTAA 2 cut(s) 315, 320
SatI GCNGC 2 cut(s) 164, 167
Sau3AI GATC 1 cut(s) 254
SchI GAGTC 2 cut(s) 73, 290
SetI ASST 7 cut(s) 96, 117, 181, 189, 312, 327, 352
SfaNI GCATC 1 cut(s) 129
SpeI ACTAGT 1 cut(s) 380
SseBI AGGCCT 1 cut(s) 533
SsiI CCGC 2 cut(s) 74, 164
SspMI CTAG 2 cut(s) 176, 381
StuI AGGCCT 1 cut(s) 533
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 215
TaiI ACGT 1 cut(s) 352
TaqI TCGA 3 cut(s) 54, 368, 501
TatI WGTACW 1 cut(s) 383
TauI GCSGC 1 cut(s) 166
TfiI GAWTC 1 cut(s) 408
Tru1I TTAA 2 cut(s) 315, 320
Tru9I TTAA 2 cut(s) 315, 320
TseI GCWGC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 290
TspGWI ACGGA 1 cut(s) 401
Tth111I GACNNNGTC 1 cut(s) 82
Van91I CCANNNNNTGG 1 cut(s) 30
XagI CCTNNNNNAGG 2 cut(s) 174, 527
XceI RCATGY 2 cut(s) 197, 476
XspI CTAG 2 cut(s) 176, 381
Zsp2I ATGCAT 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.