Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0014828

Physical Location & Seq

Genomic Coordinates Forward (+)

18832144 .. 18834359

Gene Structure 2216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG203700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAACAATCGGATTGTTATTGCAAACTGTGGAGCCATAAGCTTTTTGGTGGGTTTGCTAAGCTCAACTGACAAAAGGGTACAAGAAAATACTGTCACAGCACTTCTTAACTTGTCGATCAATAATGACAACAAGATCAGAATTGCTACTGCTGCCAAGGCAATTGAGTCTCTGGTTCATGTGCTTGAGAATGGGAGTGATGAGGCCAAGGAGAACTCAGCTGCCACATTATTTAGCCTTTCGATGACCTGGGAAAACAAGGTTCGGATTGGAAGGGAACGGATTGTTCAAGCTGGTGCTGTGAAGTACTTGGTGGAGTTTGTGATGAATCCAGAAGCTGGAATAGTTGACCAGACTATTGCTGTTTTGGCTGCTTTTTGTACAAGTCATGAAGGGAGGCTAGCAATTGTTGAGGAAGGTGGGGTTCCTGTTCTGGTTGAGGTTTTGAAGTTAGGTTGCGAAAGAGGCAAGGAGAATGCAGCTGCTGCTCTATTACAGCTCTGCACAAATAGTGAAGAACAATGTAGTATGGTGGTTGATAAAGGAGTTGTTCCATCTTTGGTGGCAATGTCACAATCCGGCACCCCAAGGGCCAAAGAAAATGCACAAACACTCACCTTTGTATGGGGAGGAGTCCTTTACTATGCATATTGCCGAGGGTCCGGGACCAAGAATTGGGAAGTTTTAGTGAATTATGTTGTGTTAAACTTGAACAAGAATAAACATTGCGCAACCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

246

Amino Acids

26.53

Weight (kDa)

6.33

Isoelectric Point (pI)

26.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arm	PF00514	3 - 39	1.6e-08	Armadillo/beta-catenin-like repeat
ARM_ARMC5	PF24768	3 - 166	2.1e-10	ARMC5
ARM_PUB	PF25598	10 - 205	3.4e-17	Plant U-box protein ARM repeat region
ARM_ARMC5	PF24768	115 - 195	7.5e-06	ARMC5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014828)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G225500_v2.0.a1
pyrus_communis	pycom02g14680
rosa_chinensis	RchiOBHm_Chr2g0107221
rosa_laevigata	RLG00000017561
rosa_multiflora	Rmu_sc0021695.1_g000001 Rmu_ssc0000269.1_g000001 Rmu_ssc0000269.1_g000004
rosa_roxburghii	Rroxscaffold_2G00136530
rosa_rugosa	Rorug02G0141000
rosa_samantha	Rh2AG191700 Rh2AG191800 Rh2BG203700 Rh2CG196900 Rh2CG197000 Rh2DG199000 Rh2DG199100
rosa_wichuraiana	Rw2G015160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	730
AccB1I	GGYRCC	1 cut(s)	581
AccB7I	CCANNNNNTGG	2 cut(s)	338, 675
AfaI	GTAC	3 cut(s)	81, 308, 382
AfiI	CCNNNNNNNGG	3 cut(s)	338, 624, 675
AgsI	TTSAA	3 cut(s)	290, 448, 712
AjnI	CCWGG	1 cut(s)	248
AluBI	AGCT	7 cut(s)	42, 63, 221, 293, 338, 482, 499
AluI	AGCT	7 cut(s)	42, 63, 221, 293, 338, 482, 499
Alw26I	GTCTC	1 cut(s)	174
AlwNI	CAGNNNCTG	2 cut(s)	338, 485
AoxI	GGCC	2 cut(s)	204, 591
ApeKI	GCWGC	6 cut(s)	152, 221, 371, 479, 482, 485
AspLEI	GCGC	1 cut(s)	731
AspS9I	GGNCC	3 cut(s)	591, 660, 666
AsuC2I	CCSGG	1 cut(s)	664
AsuHPI	GGTGA	1 cut(s)	607
AsuNHI	GCTAGC	1 cut(s)	400
AvaII	GGWCC	2 cut(s)	660, 666
BanI	GGYRCC	1 cut(s)	581
BbvI	GCAGC	6 cut(s)	139, 208, 358, 469, 472, 491
BccI	CCATC	1 cut(s)	562
BciT130I	CCWGG	1 cut(s)	250
BcnI	CCSGG	1 cut(s)	664
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	2 cut(s)	401, 739
BisI	GCNGC	6 cut(s)	153, 222, 372, 480, 483, 486
BlpI	GCTNAGC	1 cut(s)	59
BlsI	GCNGC	6 cut(s)	154, 223, 373, 481, 484, 487
BmcAI	AGTACT	1 cut(s)	308
Bme1390I	CCNGG	2 cut(s)	250, 664
Bme18I	GGWCC	2 cut(s)	660, 666
BmgT120I	GGNCC	3 cut(s)	591, 660, 666
BmiI	GGNNCC	5 cut(s)	34, 426, 583, 661, 667
BmrFI	CCNGG	2 cut(s)	250, 664
BmtI	GCTAGC	1 cut(s)	404
Bpu1102I	GCTNAGC	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	664
BsaJI	CCNNGG	5 cut(s)	156, 207, 249, 587, 655
Bsc4I	CCNNNNNNNGG	3 cut(s)	338, 624, 675
Bse3DI	GCAATG	2 cut(s)	573, 724
BseBI	CCWGG	1 cut(s)	250
BseDI	CCNNGG	5 cut(s)	156, 207, 249, 587, 655
BseLI	CCNNNNNNNGG	3 cut(s)	338, 624, 675
BseMI	GCAATG	2 cut(s)	573, 724
BseMII	CTCAG	1 cut(s)	231
BseRI	GAGGAG	1 cut(s)	645
BseXI	GCAGC	6 cut(s)	139, 208, 358, 469, 472, 491
BsgI	GTGCAG	1 cut(s)	487
BshFI	GGCC	2 cut(s)	206, 593
BshNI	GGYRCC	1 cut(s)	581
BsiSI	CCGG	2 cut(s)	579, 663
BslFI	GGGAC	1 cut(s)	679
BslI	CCNNNNNNNGG	3 cut(s)	338, 624, 675
BsmAI	GTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	679
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	2 cut(s)	206, 593
Bsp1407I	TGTACA	1 cut(s)	380
Bsp143I	GATC	2 cut(s)	117, 135
Bsp1720I	GCTNAGC	1 cut(s)	59
BspANI	GGCC	2 cut(s)	206, 593
BspCNI	CTCAG	1 cut(s)	230
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	5 cut(s)	34, 426, 583, 661, 667
BspOI	GCTAGC	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	581
BsrDI	GCAATG	2 cut(s)	573, 724
BsrGI	TGTACA	1 cut(s)	380
BssECI	CCNNGG	5 cut(s)	156, 207, 249, 587, 655
BssMI	GATC	2 cut(s)	117, 135
BssT1I	CCWWGG	3 cut(s)	156, 207, 587
Bst2UI	CCWGG	1 cut(s)	250
Bst4CI	ACNGT	2 cut(s)	29, 94
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstAUI	TGTACA	1 cut(s)	380
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	2 cut(s)	59, 217
BstHHI	GCGC	1 cut(s)	731
BstKTI	GATC	2 cut(s)	120, 138
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	2 cut(s)	117, 135
BstMWI	GCNNNNNNNGC	6 cut(s)	152, 158, 368, 465, 485, 735
BstNI	CCWGG	1 cut(s)	250
BstSCI	CCNGG	2 cut(s)	248, 662
BstV1I	GCAGC	6 cut(s)	139, 208, 358, 469, 472, 491
BsuRI	GGCC	2 cut(s)	206, 593
Cac8I	GCNNGC	1 cut(s)	402
CaiI	CAGNNNCTG	2 cut(s)	338, 485
CciI	TCATGA	1 cut(s)	388
CfoI	GCGC	1 cut(s)	731
Cfr13I	GGNCC	3 cut(s)	591, 660, 666
Csp6I	GTAC	3 cut(s)	80, 307, 381
CviAII	CATG	2 cut(s)	179, 389
CviQI	GTAC	3 cut(s)	80, 307, 381
DdeI	CTNAG	2 cut(s)	59, 217
DpnI	GATC	2 cut(s)	119, 137
DpnII	GATC	2 cut(s)	117, 135
Eco130I	CCWWGG	3 cut(s)	156, 207, 587
Eco47I	GGWCC	2 cut(s)	660, 666
EcoRII	CCWGG	1 cut(s)	248
EcoT14I	CCWWGG	3 cut(s)	156, 207, 587
EcoT22I	ATGCAT	1 cut(s)	649
ErhI	CCWWGG	3 cut(s)	156, 207, 587
FaeI	CATG	2 cut(s)	182, 392
FaiI	YATR	8 cut(s)	38, 180, 390, 530, 625, 645, 649, 696
FaqI	GGGAC	1 cut(s)	679
FatI	CATG	2 cut(s)	178, 388
Fnu4HI	GCNGC	6 cut(s)	153, 222, 372, 480, 483, 486
Fsp4HI	GCNGC	6 cut(s)	153, 222, 372, 480, 483, 486
FspBI	CTAG	2 cut(s)	401, 739
FspI	TGCGCA	1 cut(s)	730
GlaI	GCGC	1 cut(s)	730
GluI	GCNGC	6 cut(s)	153, 222, 372, 480, 483, 486
HaeIII	GGCC	2 cut(s)	206, 593
HapII	CCGG	2 cut(s)	579, 663
HhaI	GCGC	1 cut(s)	731
Hin1II	CATG	2 cut(s)	182, 392
Hin6I	GCGC	1 cut(s)	729
HinP1I	GCGC	1 cut(s)	729
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	3 cut(s)	167, 328, 633
HpaII	CCGG	2 cut(s)	579, 663
HphI	GGTGA	1 cut(s)	607
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	3 cut(s)	12, 140, 267
Hpy188III	TCNNGA	2 cut(s)	332, 389
Hpy8I	GTNNAC	1 cut(s)	349
HpyAV	CCTTC	3 cut(s)	267, 386, 410
HpyCH4III	ACNGT	2 cut(s)	29, 94
HpyCH4V	TGCA	5 cut(s)	23, 479, 504, 605, 647
HpyF10VI	GCNNNNNNNGC	6 cut(s)	152, 158, 368, 465, 485, 735
HpyF3I	CTNAG	2 cut(s)	59, 217
Hsp92II	CATG	2 cut(s)	182, 392
HspAI	GCGC	1 cut(s)	729
Kzo9I	GATC	2 cut(s)	117, 135
LmnI	GCTCC	1 cut(s)	32
Lsp1109I	GCAGC	6 cut(s)	139, 208, 358, 469, 472, 491
MaeI	CTAG	2 cut(s)	401, 739
MaeIII	GTNAC	2 cut(s)	94, 570
MalI	GATC	2 cut(s)	119, 137
MboI	GATC	2 cut(s)	117, 135
MboII	GAAGA	1 cut(s)	527
MfeI	CAATTG	2 cut(s)	162, 405
MluCI	AATT	5 cut(s)	141, 162, 405, 673, 691
MlyI	GAGTC	2 cut(s)	176, 642
MnlI	CCTC	7 cut(s)	196, 390, 406, 433, 458, 623, 650
Mph1103I	ATGCAT	1 cut(s)	649
MseI	TTAA	2 cut(s)	108, 704
MspA1I	CMGCKG	2 cut(s)	221, 482
MspI	CCGG	2 cut(s)	579, 663
MspR9I	CCNGG	2 cut(s)	250, 664
MunI	CAATTG	2 cut(s)	162, 405
Mva1269I	GAATGC	1 cut(s)	481
MvaI	CCWGG	1 cut(s)	250
MwoI	GCNNNNNNNGC	6 cut(s)	152, 158, 368, 465, 485, 735
NciI	CCSGG	1 cut(s)	664
NdeII	GATC	2 cut(s)	117, 135
NheI	GCTAGC	1 cut(s)	400
NlaIII	CATG	2 cut(s)	182, 392
NlaIV	GGNNCC	5 cut(s)	34, 426, 583, 661, 667
NmeAIII	GCCGAG	1 cut(s)	680
NmuCI	GTSAC	2 cut(s)	94, 570
NsbI	TGCGCA	1 cut(s)	730
NsiI	ATGCAT	1 cut(s)	649
PagI	TCATGA	1 cut(s)	388
PctI	GAATGC	1 cut(s)	481
PfeI	GAWTC	1 cut(s)	328
PflMI	CCANNNNNTGG	2 cut(s)	338, 675
PfoI	TCCNGGA	1 cut(s)	662
PkrI	GCNGC	6 cut(s)	154, 223, 373, 481, 484, 487
PleI	GAGTC	2 cut(s)	175, 641
PpsI	GAGTC	2 cut(s)	175, 641
Psp6I	CCWGG	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	248
PspN4I	GGNNCC	5 cut(s)	34, 426, 583, 661, 667
PspPI	GGNCC	3 cut(s)	591, 660, 666
PstNI	CAGNNNCTG	2 cut(s)	338, 485
PvuII	CAGCTG	2 cut(s)	221, 482
RsaI	GTAC	3 cut(s)	81, 308, 382
RsaNI	GTAC	3 cut(s)	80, 307, 381
SaqAI	TTAA	2 cut(s)	108, 704
SatI	GCNGC	6 cut(s)	153, 222, 372, 480, 483, 486
Sau3AI	GATC	2 cut(s)	117, 135
Sau96I	GGNCC	3 cut(s)	591, 660, 666
ScaI	AGTACT	1 cut(s)	308
SchI	GAGTC	2 cut(s)	176, 642
ScrFI	CCNGG	2 cut(s)	250, 664
SinI	GGWCC	2 cut(s)	660, 666
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	5 cut(s)	141, 162, 405, 673, 691
SspMI	CTAG	2 cut(s)	401, 739
StyD4I	CCNGG	2 cut(s)	248, 662
StyI	CCWWGG	3 cut(s)	156, 207, 587
TaaI	ACNGT	2 cut(s)	29, 94
TaqI	TCGA	2 cut(s)	116, 242
TasI	AATT	5 cut(s)	141, 162, 405, 673, 691
TatI	WGTACW	2 cut(s)	306, 380
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	2 cut(s)	108, 704
Tru9I	TTAA	2 cut(s)	108, 704
TseFI	GTSAC	2 cut(s)	94, 570
TseI	GCWGC	6 cut(s)	152, 221, 371, 479, 482, 485
Tsp45I	GTSAC	2 cut(s)	94, 570
TspDTI	ATGAA	4 cut(s)	17, 167, 341, 405
TspGWI	ACGGA	1 cut(s)	295
Van91I	CCANNNNNTGG	2 cut(s)	338, 675
VpaK11BI	GGWCC	2 cut(s)	660, 666
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XspI	CTAG	2 cut(s)	401, 739
ZrmI	AGTACT	1 cut(s)	308
Zsp2I	ATGCAT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.