Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000269.1

Orthogroup ID

OG0014828

Physical Location & Seq

Genomic Coordinates Forward (+)

5210 .. 6055

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000269.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atggaaacaagagcagacctcaagggagtcaaatcccaagtccagaatctggttgaagagttacatggcacttgtgtaaatactcaaagagaagcaacacttcagctccgactactcgcaaagcataacatgaacaattggattgttattgcaaactgtggagccataagctttttggtgggtttgcgaagctcaactgacaaaagggtacaagaaaatgctatcacagcacttcttaatttgtcgatcaataatgacaacaagatcagaattgctattgctgccaaggcaattgagtctctggttcatgtgcttgagaataggagtgatgaggccaaggagaactcagctgccacattatttagcctttcgatgacctgggaaaaaaaggttcagattggaaggtccaaggctattaggcctctagttgagttactagggaatgggagtcttagaggggaaaaagatgcagctacagcattgtttagtttgttgattttttgtgagaacagggaacggattgttcaagctggtgctgtgaagtacttggtggagtttgtgatgaatccagaagctggaatattaggatccgaaagaggcaaggagaatgcagctgctgctctattacagctctgcacaaatagtgaagaacaatgtagtatggtggttgataaaggagttgttccatctttggtggcaatgtcacaatccggcacccctaaggccaaagaaaatgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

246

Amino Acids

26.76

Weight (kDa)

8.26

Isoelectric Point (pI)

30.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014828)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G225500_v2.0.a1
pyrus_communis	pycom02g14680
rosa_chinensis	RchiOBHm_Chr2g0107221
rosa_laevigata	RLG00000017561
rosa_multiflora	Rmu_sc0021695.1_g000001 Rmu_ssc0000269.1_g000001 Rmu_ssc0000269.1_g000004
rosa_roxburghii	Rroxscaffold_2G00136530
rosa_rugosa	Rorug02G0141000
rosa_samantha	Rh2AG191700 Rh2AG191800 Rh2BG203700 Rh2CG196900 Rh2CG197000 Rh2DG199000 Rh2DG199100
rosa_wichuraiana	Rw2G015160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	713
AccB7I	CCANNNNNTGG	2 cut(s)	49, 575
AclWI	GGATC	2 cut(s)	582, 595
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	2 cut(s)	210, 545
AfiI	CCNNNNNNNGG	2 cut(s)	49, 575
AgsI	TTSAA	2 cut(s)	56, 527
AjnI	CCWGG	1 cut(s)	377
AluBI	AGCT	9 cut(s)	106, 171, 192, 350, 473, 530, 575, 614, 631
AluI	AGCT	9 cut(s)	106, 171, 192, 350, 473, 530, 575, 614, 631
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	2 cut(s)	582, 595
AlwNI	CAGNNNCTG	3 cut(s)	49, 575, 617
AoxI	GGCC	3 cut(s)	333, 419, 723
ApeKI	GCWGC	6 cut(s)	281, 350, 470, 611, 614, 617
ArsI	GACNNNNNNTTYG	2 cut(s)	24, 56
AspS9I	GGNCC	1 cut(s)	405
AvaII	GGWCC	1 cut(s)	405
AxyI	CCTNAGG	1 cut(s)	720
BamHI	GGATCC	1 cut(s)	587
BanI	GGYRCC	1 cut(s)	713
BbvI	GCAGC	6 cut(s)	268, 337, 482, 601, 604, 623
BccI	CCATC	1 cut(s)	694
BciT130I	CCWGG	1 cut(s)	379
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	2 cut(s)	425, 437
BfmI	CTRYAG	1 cut(s)	474
BisI	GCNGC	6 cut(s)	282, 351, 471, 612, 615, 618
BlsI	GCNGC	6 cut(s)	283, 352, 472, 613, 616, 619
BmcAI	AGTACT	1 cut(s)	545
Bme1390I	CCNGG	1 cut(s)	379
Bme18I	GGWCC	1 cut(s)	405
BmgT120I	GGNCC	1 cut(s)	405
BmiI	GGNNCC	3 cut(s)	163, 589, 715
BmrFI	CCNGG	1 cut(s)	379
BmsI	GCATC	1 cut(s)	457
BplI	GAGNNNNNCTC	1 cut(s)	35
BpuEI	CTTGAG	2 cut(s)	5, 335
BsaJI	CCNNGG	4 cut(s)	285, 336, 378, 408
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 575
Bse21I	CCTNAGG	1 cut(s)	720
Bse3DI	GCAATG	1 cut(s)	705
BseBI	CCWGG	1 cut(s)	379
BseDI	CCNNGG	4 cut(s)	285, 336, 378, 408
BseLI	CCNNNNNNNGG	2 cut(s)	49, 575
BseMI	GCAATG	1 cut(s)	705
BseMII	CTCAG	1 cut(s)	360
BseXI	GCAGC	6 cut(s)	268, 337, 482, 601, 604, 623
BsgI	GTGCAG	1 cut(s)	619
BshFI	GGCC	3 cut(s)	335, 421, 725
BshNI	GGYRCC	1 cut(s)	713
BsiSI	CCGG	1 cut(s)	711
BslI	CCNNNNNNNGG	2 cut(s)	49, 575
BsmAI	GTCTC	1 cut(s)	303
BsmI	GAATGC	1 cut(s)	613
BsnI	GGCC	3 cut(s)	335, 421, 725
Bsp143I	GATC	3 cut(s)	246, 264, 587
BspANI	GGCC	3 cut(s)	335, 421, 725
BspCNI	CTCAG	1 cut(s)	359
BspLI	GGNNCC	3 cut(s)	163, 589, 715
BspPI	GGATC	2 cut(s)	582, 595
BspT107I	GGYRCC	1 cut(s)	713
BsrDI	GCAATG	1 cut(s)	705
BssECI	CCNNGG	4 cut(s)	285, 336, 378, 408
BssMI	GATC	3 cut(s)	246, 264, 587
BssT1I	CCWWGG	3 cut(s)	285, 336, 408
Bst2UI	CCWGG	1 cut(s)	379
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	51
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstDEI	CTNAG	3 cut(s)	346, 452, 720
BstKTI	GATC	3 cut(s)	249, 267, 590
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	3 cut(s)	246, 264, 587
BstMWI	GCNNNNNNNGC	5 cut(s)	227, 281, 287, 476, 617
BstNI	CCWGG	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	377
BstSFI	CTRYAG	1 cut(s)	474
BstV1I	GCAGC	6 cut(s)	268, 337, 482, 601, 604, 623
BstX2I	RGATCY	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	587
Bsu36I	CCTNAGG	1 cut(s)	720
BsuRI	GGCC	3 cut(s)	335, 421, 725
CaiI	CAGNNNCTG	3 cut(s)	49, 575, 617
Cfr13I	GGNCC	1 cut(s)	405
Csp6I	GTAC	2 cut(s)	209, 544
CviAII	CATG	3 cut(s)	65, 130, 308
CviQI	GTAC	2 cut(s)	209, 544
DdeI	CTNAG	3 cut(s)	346, 452, 720
DpnI	GATC	3 cut(s)	248, 266, 589
DpnII	GATC	3 cut(s)	246, 264, 587
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Eco130I	CCWWGG	3 cut(s)	285, 336, 408
Eco147I	AGGCCT	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	405
Eco57I	CTGAAG	1 cut(s)	86
Eco81I	CCTNAGG	1 cut(s)	720
EcoRII	CCWGG	1 cut(s)	377
EcoT14I	CCWWGG	3 cut(s)	285, 336, 408
ErhI	CCWWGG	3 cut(s)	285, 336, 408
FaeI	CATG	3 cut(s)	68, 133, 311
FaiI	YATR	7 cut(s)	66, 126, 131, 167, 309, 662, 739
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FatI	CATG	3 cut(s)	64, 129, 307
Fnu4HI	GCNGC	6 cut(s)	282, 351, 471, 612, 615, 618
Fsp4HI	GCNGC	6 cut(s)	282, 351, 471, 612, 615, 618
FspBI	CTAG	2 cut(s)	425, 437
GluI	GCNGC	6 cut(s)	282, 351, 471, 612, 615, 618
HaeIII	GGCC	3 cut(s)	335, 421, 725
HapII	CCGG	1 cut(s)	711
Hin1II	CATG	3 cut(s)	68, 133, 311
HindIII	AAGCTT	1 cut(s)	169
HinfI	GANTC	5 cut(s)	27, 46, 296, 448, 565
HpaII	CCGG	1 cut(s)	711
Hpy188I	TCNGA	4 cut(s)	110, 269, 396, 592
Hpy188III	TCNNGA	2 cut(s)	43, 569
HpyAV	CCTTC	1 cut(s)	396
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	4 cut(s)	152, 470, 611, 636
HpyF10VI	GCNNNNNNNGC	5 cut(s)	227, 281, 287, 476, 617
HpyF3I	CTNAG	3 cut(s)	346, 452, 720
Hsp92II	CATG	3 cut(s)	68, 133, 311
Kzo9I	GATC	3 cut(s)	246, 264, 587
LmnI	GCTCC	2 cut(s)	111, 161
Lsp1109I	GCAGC	6 cut(s)	268, 337, 482, 601, 604, 623
LweI	GCATC	1 cut(s)	457
MaeI	CTAG	2 cut(s)	425, 437
MaeIII	GTNAC	3 cut(s)	60, 432, 702
MalI	GATC	3 cut(s)	248, 266, 589
MboI	GATC	3 cut(s)	246, 264, 587
MboII	GAAGA	2 cut(s)	68, 659
MfeI	CAATTG	2 cut(s)	136, 291
MflI	RGATCY	1 cut(s)	587
MluCI	AATT	4 cut(s)	136, 238, 270, 291
MlyI	GAGTC	3 cut(s)	36, 305, 457
MmeI	TCCRAC	1 cut(s)	133
MnlI	CCTC	5 cut(s)	29, 325, 432, 449, 590
MseI	TTAA	1 cut(s)	237
MspA1I	CMGCKG	2 cut(s)	350, 614
MspI	CCGG	1 cut(s)	711
MspR9I	CCNGG	1 cut(s)	379
MunI	CAATTG	2 cut(s)	136, 291
Mva1269I	GAATGC	1 cut(s)	613
MvaI	CCWGG	1 cut(s)	379
MwoI	GCNNNNNNNGC	5 cut(s)	227, 281, 287, 476, 617
NdeII	GATC	3 cut(s)	246, 264, 587
NlaIII	CATG	3 cut(s)	68, 133, 311
NlaIV	GGNNCC	3 cut(s)	163, 589, 715
NmuCI	GTSAC	1 cut(s)	702
PceI	AGGCCT	1 cut(s)	421
PctI	GAATGC	1 cut(s)	613
PfeI	GAWTC	2 cut(s)	46, 565
PflMI	CCANNNNNTGG	2 cut(s)	49, 575
PkrI	GCNGC	6 cut(s)	283, 352, 472, 613, 616, 619
PleI	GAGTC	3 cut(s)	35, 304, 456
PpsI	GAGTC	3 cut(s)	35, 304, 456
Psp6I	CCWGG	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	377
PspN4I	GGNNCC	3 cut(s)	163, 589, 715
PspPI	GGNCC	1 cut(s)	405
PstNI	CAGNNNCTG	3 cut(s)	49, 575, 617
PsuI	RGATCY	1 cut(s)	587
PvuII	CAGCTG	2 cut(s)	350, 614
RsaI	GTAC	2 cut(s)	210, 545
RsaNI	GTAC	2 cut(s)	209, 544
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	6 cut(s)	282, 351, 471, 612, 615, 618
Sau3AI	GATC	3 cut(s)	246, 264, 587
Sau96I	GGNCC	1 cut(s)	405
ScaI	AGTACT	1 cut(s)	545
SchI	GAGTC	3 cut(s)	36, 305, 457
ScrFI	CCNGG	1 cut(s)	379
SfaNI	GCATC	1 cut(s)	457
SfcI	CTRYAG	1 cut(s)	474
SinI	GGWCC	1 cut(s)	405
SmlI	CTYRAG	2 cut(s)	20, 314
SmoI	CTYRAG	2 cut(s)	20, 314
Sse9I	AATT	4 cut(s)	136, 238, 270, 291
SseBI	AGGCCT	1 cut(s)	421
SspI	AATATT	1 cut(s)	582
SspMI	CTAG	2 cut(s)	425, 437
StuI	AGGCCT	1 cut(s)	421
StyD4I	CCNGG	1 cut(s)	377
StyI	CCWWGG	3 cut(s)	285, 336, 408
TaaI	ACNGT	1 cut(s)	158
TaqI	TCGA	2 cut(s)	245, 371
TasI	AATT	4 cut(s)	136, 238, 270, 291
TatI	WGTACW	1 cut(s)	543
TfiI	GAWTC	2 cut(s)	46, 565
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	702
TseI	GCWGC	6 cut(s)	281, 350, 470, 611, 614, 617
Tsp45I	GTSAC	1 cut(s)	702
TspDTI	ATGAA	3 cut(s)	146, 296, 578
TspGWI	ACGGA	1 cut(s)	532
Van91I	CCANNNNNTGG	2 cut(s)	49, 575
VpaK11BI	GGWCC	1 cut(s)	405
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XspI	CTAG	2 cut(s)	425, 437
ZrmI	AGTACT	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.