Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0014828

Physical Location & Seq

Genomic Coordinates Forward (+)

11254636 .. 11255730

Gene Structure 1095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g14680.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAGGAGGCGTCGAGCATCCGTGAGCCCTGTTCCCTCTCCTGCCGGCGAAACTATAGTAGACAACTCCGGATTGATTGAAGCCCGTGTTCGTGATCTTGTTGATGACTTGAATGGCACTTCTTCAGTTGAATCTCAAAGAGCTGCAACGTTTCAACTCCGTTTACTCGCCAGGCATGGCATGGAAAATCGGGTTGTTATTGCAAACTGTGGAGCCATTGGCTTCTTGGTGGATTTGCTTCAATCTGCAGACAACGGGGTTCAGGAAAATGCTGTCACAGCACTTCTTAACTTGTCCATCTATGGTCCCAACAAAACTGCAATAGCTAATACTGCCAATGCAATTGAACATCTGGTTCATGTCCTCGAGACAGGCAGTGCCGAGGCCAAGGAGAACTCCGCGGCCACTCTCTATAGCCTTTCGGTGCACGAGGAGGGCAACAGTGTTCGGATTGGAAGGTCCGGTGCTATTAGGCTTCTAGTTGATTTACTGAGGAATGGGACTCTTAGAGGGAAGAACGATGCAGCCTCGACCTTGTTTAGCTTGTCGAATTTTCGTGAAAACAAGCCCCGGATTGTTGAAGCGGGTGCTGTAAAGTACCTGGTGGAGTTGATGAACCCGGCAGTTGGAATGGTTGACAAGGCAGTTGCTATTCTGGCTAATCTTTCTACGATTCCTGAGGGGCGTACTGCGATTAGCCAAGAAGGCGGGATCCCTGGTCTGGTTGAAGTTCTCGAGTTGGGTTCTGCAAGAGGAAAGGAAAATGCAGTTGCGGCTCTTTTACAACTCTGCACAGATAGTAACAGACATTGCAATACGTTGCTTCGACAAGGAGCTCTTCCACCTTTAGTGGCACTCAACCAATCTGGCACCCCAAGGGCCATACAAAAGGCAAAGTTACTCCTCAGTCTCTTAGCTTCTTACATGAAAATGCACGGAAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

316

Amino Acids

33.45

Weight (kDa)

9.19

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014828)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G225500_v2.0.a1
pyrus_communis	pycom02g14680
rosa_chinensis	RchiOBHm_Chr2g0107221
rosa_laevigata	RLG00000017561
rosa_multiflora	Rmu_sc0021695.1_g000001 Rmu_ssc0000269.1_g000001 Rmu_ssc0000269.1_g000004
rosa_roxburghii	Rroxscaffold_2G00136530
rosa_rugosa	Rorug02G0141000
rosa_samantha	Rh2AG191700 Rh2AG191800 Rh2BG203700 Rh2CG196900 Rh2CG197000 Rh2DG199000 Rh2DG199100
rosa_wichuraiana	Rw2G015160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	869
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	1 cut(s)	401
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	5 cut(s)	399, 401, 584, 708, 773
AclI	AACGTT	1 cut(s)	149
AclWI	GGATC	2 cut(s)	706, 719
AcoI	YGGCCR	1 cut(s)	402
AcsI	RAATTY	1 cut(s)	550
AcuI	CTGAAG	1 cut(s)	108
AcyI	GRCGYC	1 cut(s)	10
AfaI	GTAC	2 cut(s)	599, 688
AfiI	CCNNNNNNNGG	2 cut(s)	626, 721
AgsI	TTSAA	8 cut(s)	80, 112, 131, 155, 242, 347, 581, 728
AjnI	CCWGG	3 cut(s)	170, 600, 715
AluBI	AGCT	5 cut(s)	143, 326, 543, 836, 917
AluI	AGCT	5 cut(s)	143, 326, 543, 836, 917
Alw21I	GWGCWC	2 cut(s)	429, 838
Alw26I	GTCTC	2 cut(s)	362, 914
Alw44I	GTGCAC	1 cut(s)	425
AlwI	GGATC	2 cut(s)	706, 719
Ama87I	CYCGRG	2 cut(s)	365, 734
Aor13HI	TCCGGA	1 cut(s)	68
AoxI	GGCC	3 cut(s)	384, 402, 879
ApaLI	GTGCAC	1 cut(s)	425
ApeKI	GCWGC	2 cut(s)	143, 524
ApoI	RAATTY	1 cut(s)	550
AspS9I	GGNCC	3 cut(s)	305, 459, 879
AsuC2I	CCSGG	2 cut(s)	571, 620
AvaI	CYCGRG	2 cut(s)	365, 734
AvaII	GGWCC	2 cut(s)	305, 459
AxyI	CCTNAGG	1 cut(s)	678
BaeGI	GKGCMC	1 cut(s)	429
BamHI	GGATCC	1 cut(s)	711
BanI	GGYRCC	1 cut(s)	869
BanII	GRGCYC	2 cut(s)	29, 838
BauI	CACGAG	1 cut(s)	428
Bbv12I	GWGCWC	2 cut(s)	429, 838
BbvI	GCAGC	2 cut(s)	130, 536
BccI	CCATC	1 cut(s)	305
BciT130I	CCWGG	3 cut(s)	172, 602, 717
BcnI	CCSGG	2 cut(s)	571, 620
BcoDI	GTCTC	2 cut(s)	362, 914
BfaI	CTAG	1 cut(s)	479
BfmI	CTRYAG	3 cut(s)	54, 246, 412
BglI	GCCNNNNNGGC	1 cut(s)	705
BisI	GCNGC	4 cut(s)	144, 402, 525, 774
BlsI	GCNGC	4 cut(s)	145, 403, 526, 775
Bme1390I	CCNGG	5 cut(s)	172, 571, 602, 620, 717
Bme18I	GGWCC	2 cut(s)	305, 459
BmeT110I	CYCGRG	2 cut(s)	365, 734
BmgT120I	GGNCC	3 cut(s)	305, 459, 879
BmiI	GGNNCC	4 cut(s)	214, 307, 713, 871
BmrFI	CCNGG	5 cut(s)	172, 571, 602, 620, 717
BmsI	GCATC	2 cut(s)	26, 511
BpuMI	CCSGG	2 cut(s)	571, 620
BsaHI	GRCGYC	1 cut(s)	10
BsaJI	CCNNGG	6 cut(s)	381, 387, 399, 569, 715, 875
BsaWI	WCCGGW	2 cut(s)	68, 461
Bsc4I	CCNNNNNNNGG	2 cut(s)	626, 721
Bse118I	RCCGGY	1 cut(s)	44
Bse21I	CCTNAGG	1 cut(s)	678
Bse3DI	GCAATG	1 cut(s)	808
BseAI	TCCGGA	1 cut(s)	68
BseBI	CCWGG	3 cut(s)	172, 602, 717
BseDI	CCNNGG	6 cut(s)	381, 387, 399, 569, 715, 875
BseGI	GGATG	1 cut(s)	17
BseLI	CCNNNNNNNGG	2 cut(s)	626, 721
BseMI	GCAATG	1 cut(s)	808
BseMII	CTCAG	3 cut(s)	482, 669, 919
BseRI	GAGGAG	3 cut(s)	19, 446, 893
BseSI	GKGCMC	1 cut(s)	429
BseXI	GCAGC	2 cut(s)	130, 536
BsgI	GTGCAG	1 cut(s)	775
Bsh1236I	CGCG	1 cut(s)	401
BshFI	GGCC	3 cut(s)	386, 404, 881
BshNI	GGYRCC	1 cut(s)	869
BsiHKAI	GWGCWC	2 cut(s)	429, 838
BsiHKCI	CYCGRG	2 cut(s)	365, 734
BsiSI	CCGG	5 cut(s)	45, 69, 462, 571, 620
BslFI	GGGAC	2 cut(s)	291, 514
BslI	CCNNNNNNNGG	2 cut(s)	626, 721
BsmAI	GTCTC	2 cut(s)	362, 914
BsmFI	GGGAC	2 cut(s)	291, 514
BsnI	GGCC	3 cut(s)	386, 404, 881
BsoBI	CYCGRG	2 cut(s)	365, 734
Bsp1286I	GDGCHC	3 cut(s)	29, 429, 838
Bsp13I	TCCGGA	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	94, 711
BspACI	CCGC	5 cut(s)	399, 401, 584, 708, 773
BspANI	GGCC	3 cut(s)	386, 404, 881
BspCNI	CTCAG	3 cut(s)	483, 670, 918
BspEI	TCCGGA	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	401
BspLI	GGNNCC	4 cut(s)	214, 307, 713, 871
BspMAI	CTGCAG	1 cut(s)	250
BspPI	GGATC	2 cut(s)	706, 719
BspQI	GCTCTTC	1 cut(s)	843
BspT107I	GGYRCC	1 cut(s)	869
BsrDI	GCAATG	1 cut(s)	808
BsrFI	RCCGGY	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	6 cut(s)	381, 387, 399, 569, 715, 875
BssMI	GATC	2 cut(s)	94, 711
BssNI	GRCGYC	1 cut(s)	10
BssSI	CACGAG	1 cut(s)	428
BssT1I	CCWWGG	2 cut(s)	387, 875
Bst2BI	CACGAG	1 cut(s)	428
Bst2UI	CCWGG	3 cut(s)	172, 602, 717
Bst4CI	ACNGT	2 cut(s)	209, 443
Bst6I	CTCTTC	1 cut(s)	843
BstACI	GRCGYC	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	5 cut(s)	491, 506, 678, 905, 913
BstDSI	CCRYGG	1 cut(s)	399
BstF5I	GGATG	1 cut(s)	17
BstFNI	CGCG	1 cut(s)	401
BstKTI	GATC	2 cut(s)	97, 714
BstMAI	GTCTC	2 cut(s)	362, 914
BstMBI	GATC	2 cut(s)	94, 711
BstMWI	GCNNNNNNNGC	5 cut(s)	278, 332, 656, 705, 773
BstNI	CCWGG	3 cut(s)	172, 602, 717
BstSCI	CCNGG	5 cut(s)	170, 569, 600, 618, 715
BstSFI	CTRYAG	3 cut(s)	54, 246, 412
BstSLI	GKGCMC	1 cut(s)	429
BstUI	CGCG	1 cut(s)	401
BstV1I	GCAGC	2 cut(s)	130, 536
BstX2I	RGATCY	1 cut(s)	711
BstYI	RGATCY	1 cut(s)	711
Bsu36I	CCTNAGG	1 cut(s)	678
BsuRI	GGCC	3 cut(s)	386, 404, 881
BtgI	CCRYGG	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	17
BtsI	GCAGTG	1 cut(s)	382
BtsIMutI	CAGTG	2 cut(s)	382, 448
Cac8I	GCNNGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	3 cut(s)	305, 459, 879
Cfr42I	CCGCGG	1 cut(s)	402
CsiI	ACCWGGT	1 cut(s)	600
Csp6I	GTAC	2 cut(s)	598, 687
CviAII	CATG	4 cut(s)	176, 181, 359, 925
CviQI	GTAC	2 cut(s)	598, 687
DdeI	CTNAG	5 cut(s)	491, 506, 678, 905, 913
DpnI	GATC	2 cut(s)	96, 713
DpnII	GATC	2 cut(s)	94, 711
EaeI	YGGCCR	1 cut(s)	402
Eam1104I	CTCTTC	1 cut(s)	843
EarI	CTCTTC	1 cut(s)	843
Ecl136II	GAGCTC	1 cut(s)	836
Eco130I	CCWWGG	2 cut(s)	387, 875
Eco24I	GRGCYC	2 cut(s)	29, 838
Eco47I	GGWCC	2 cut(s)	305, 459
Eco53kI	GAGCTC	1 cut(s)	836
Eco57I	CTGAAG	1 cut(s)	108
Eco81I	CCTNAGG	1 cut(s)	678
Eco88I	CYCGRG	2 cut(s)	365, 734
EcoICRI	GAGCTC	1 cut(s)	836
EcoRII	CCWGG	3 cut(s)	170, 600, 715
EcoT14I	CCWWGG	2 cut(s)	387, 875
EcoT38I	GRGCYC	2 cut(s)	29, 838
ErhI	CCWWGG	2 cut(s)	387, 875
FaeI	CATG	4 cut(s)	179, 184, 362, 928
FaiI	YATR	8 cut(s)	56, 177, 182, 303, 360, 414, 884, 926
FalI	AAGNNNNNCTT	2 cut(s)	822, 854
FaqI	GGGAC	2 cut(s)	291, 514
FatI	CATG	4 cut(s)	175, 180, 358, 924
FauI	CCCGC	2 cut(s)	577, 701
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	4 cut(s)	144, 402, 525, 774
FokI	GGATG	1 cut(s)	4
FriOI	GRGCYC	2 cut(s)	29, 838
Fsp4HI	GCNGC	4 cut(s)	144, 402, 525, 774
FspBI	CTAG	1 cut(s)	479
GluI	GCNGC	4 cut(s)	144, 402, 525, 774
HaeIII	GGCC	3 cut(s)	386, 404, 881
HapII	CCGG	5 cut(s)	45, 69, 462, 571, 620
Hin1I	GRCGYC	1 cut(s)	10
Hin1II	CATG	4 cut(s)	179, 184, 362, 928
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HinfI	GANTC	3 cut(s)	131, 502, 673
HpaII	CCGG	5 cut(s)	45, 69, 462, 571, 620
Hpy166II	GTNNAC	4 cut(s)	61, 164, 427, 637
Hpy188I	TCNGA	1 cut(s)	450
Hpy188III	TCNNGA	7 cut(s)	69, 92, 263, 367, 557, 677, 734
Hpy8I	GTNNAC	4 cut(s)	61, 164, 427, 637
Hpy99I	CGWCG	1 cut(s)	15
HpyAV	CCTTC	2 cut(s)	450, 698
HpyCH4III	ACNGT	2 cut(s)	209, 443
HpyCH4IV	ACGT	2 cut(s)	149, 818
HpyF10VI	GCNNNNNNNGC	5 cut(s)	278, 332, 656, 705, 773
HpyF3I	CTNAG	5 cut(s)	491, 506, 678, 905, 913
HpySE526I	ACGT	2 cut(s)	149, 818
Hsp92I	GRCGYC	1 cut(s)	10
Hsp92II	CATG	4 cut(s)	179, 184, 362, 928
Kpn2I	TCCGGA	1 cut(s)	68
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
KspI	CCGCGG	1 cut(s)	402
Kzo9I	GATC	2 cut(s)	94, 711
LguI	GCTCTTC	1 cut(s)	843
LmnI	GCTCC	2 cut(s)	212, 833
Lsp1109I	GCAGC	2 cut(s)	130, 536
LweI	GCATC	2 cut(s)	26, 511
MabI	ACCWGGT	1 cut(s)	600
MaeI	CTAG	1 cut(s)	479
MaeII	ACGT	2 cut(s)	149, 818
MaeIII	GTNAC	3 cut(s)	274, 800, 897
MalI	GATC	2 cut(s)	96, 713
MboI	GATC	2 cut(s)	94, 711
MboII	GAAGA	3 cut(s)	114, 526, 830
MfeI	CAATTG	1 cut(s)	342
MflI	RGATCY	1 cut(s)	711
MhlI	GDGCHC	3 cut(s)	29, 429, 838
MluCI	AATT	2 cut(s)	342, 550
MlyI	GAGTC	1 cut(s)	496
MmeI	TCCRAC	1 cut(s)	607
MroI	TCCGGA	1 cut(s)	68
MroNI	GCCGGC	1 cut(s)	44
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	1 cut(s)	929
MspA1I	CMGCKG	1 cut(s)	401
MspI	CCGG	5 cut(s)	45, 69, 462, 571, 620
MspR9I	CCNGG	5 cut(s)	172, 571, 602, 620, 717
MunI	CAATTG	1 cut(s)	342
MvaI	CCWGG	3 cut(s)	172, 602, 717
MvnI	CGCG	1 cut(s)	401
MwoI	GCNNNNNNNGC	5 cut(s)	278, 332, 656, 705, 773
NaeI	GCCGGC	1 cut(s)	46
NciI	CCSGG	2 cut(s)	571, 620
NdeII	GATC	2 cut(s)	94, 711
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	4 cut(s)	179, 184, 362, 928
NlaIV	GGNNCC	4 cut(s)	214, 307, 713, 871
NmeAIII	GCCGAG	1 cut(s)	406
NmuCI	GTSAC	1 cut(s)	274
PaeR7I	CTCGAG	2 cut(s)	365, 734
PciSI	GCTCTTC	1 cut(s)	843
PdiI	GCCGGC	1 cut(s)	46
PfeI	GAWTC	2 cut(s)	131, 673
PkrI	GCNGC	4 cut(s)	145, 403, 526, 775
PleI	GAGTC	1 cut(s)	496
PpsI	GAGTC	1 cut(s)	496
Psp124BI	GAGCTC	1 cut(s)	838
Psp1406I	AACGTT	1 cut(s)	149
Psp6I	CCWGG	3 cut(s)	170, 600, 715
PspGI	CCWGG	3 cut(s)	170, 600, 715
PspN4I	GGNNCC	4 cut(s)	214, 307, 713, 871
PspPI	GGNCC	3 cut(s)	305, 459, 879
PstI	CTGCAG	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	711
RsaI	GTAC	2 cut(s)	599, 688
RsaNI	GTAC	2 cut(s)	598, 687
RseI	CAYNNNNRTG	1 cut(s)	929
SacI	GAGCTC	1 cut(s)	838
SacII	CCGCGG	1 cut(s)	402
SapI	GCTCTTC	1 cut(s)	843
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	4 cut(s)	144, 402, 525, 774
Sau3AI	GATC	2 cut(s)	94, 711
Sau96I	GGNCC	3 cut(s)	305, 459, 879
SchI	GAGTC	1 cut(s)	496
ScrFI	CCNGG	5 cut(s)	172, 571, 602, 620, 717
SduI	GDGCHC	3 cut(s)	29, 429, 838
SexAI	ACCWGGT	1 cut(s)	600
SfaNI	GCATC	2 cut(s)	26, 511
SfcI	CTRYAG	3 cut(s)	54, 246, 412
Sfr274I	CTCGAG	2 cut(s)	365, 734
Sfr303I	CCGCGG	1 cut(s)	402
SgrBI	CCGCGG	1 cut(s)	402
SinI	GGWCC	2 cut(s)	305, 459
SlaI	CTCGAG	2 cut(s)	365, 734
SmiMI	CAYNNNNRTG	1 cut(s)	929
SmlI	CTYRAG	2 cut(s)	365, 734
SmoI	CTYRAG	2 cut(s)	365, 734
Sse9I	AATT	2 cut(s)	342, 550
SsiI	CCGC	5 cut(s)	399, 401, 584, 708, 773
SspMI	CTAG	1 cut(s)	479
SstI	GAGCTC	1 cut(s)	838
StyD4I	CCNGG	5 cut(s)	170, 569, 600, 618, 715
StyI	CCWWGG	2 cut(s)	387, 875
TaaI	ACNGT	2 cut(s)	209, 443
TaiI	ACGT	2 cut(s)	152, 821
TaqI	TCGA	6 cut(s)	13, 366, 530, 548, 735, 826
TasI	AATT	2 cut(s)	342, 550
TauI	GCSGC	2 cut(s)	404, 776
TfiI	GAWTC	2 cut(s)	131, 673
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	2 cut(s)	382, 448
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	2 cut(s)	143, 524
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	3 cut(s)	347, 629, 941
TspGWI	ACGGA	2 cut(s)	10, 149
TspRI	CASTG	2 cut(s)	382, 448
VneI	GTGCAC	1 cut(s)	425
VpaK11BI	GGWCC	2 cut(s)	305, 459
XapI	RAATTY	1 cut(s)	550
XcmI	CCANNNNNNNNNTGG	2 cut(s)	178, 223
XhoI	CTCGAG	2 cut(s)	365, 734
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.