Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0014828

Physical Location & Seq

Genomic Coordinates Forward (+)

18313831 .. 18314401

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG199000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAACAATCGGATTGTTATTGCAAACTGTGGAGCCATAAGCTTTTTGGTGGGTTTGCTAAGCTCAACTGACAAAAGGGTACAAGAAAATGCTGTCACAGCACTTCTTAACTTGTCGATCAATAATGACAACAAGATCAGAATTGCTACTGCTGCCAAGGCAATTGAGTCTCTGGTTCATGTGCTTGAGAATGAGAGTGATGAGGCCAAGGAGAACTCAGCTGCCACATTATTTAGCCTTTCGATGACCTGGGAAAACAAGGTTTGGATTGGAAGGTCCAAGGCTATTAGGCCTCTAGTTGAGTTACTAGGGAATGGGAGTCTTAGACGGGGAAAAAAGATGCAGCTACAGCATTGTTTAGTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

122

Amino Acids

13.39

Weight (kDa)

9.22

Isoelectric Point (pI)

34.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arm	PF00514	3 - 39	4.5e-10	Armadillo/beta-catenin-like repeat
ARM_ARMC5	PF24768	3 - 113	3.3e-07	ARMC5
ARM_PUB	PF25598	3 - 87	4.1e-06	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014828)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G225500_v2.0.a1
pyrus_communis	pycom02g14680
rosa_chinensis	RchiOBHm_Chr2g0107221
rosa_laevigata	RLG00000017561
rosa_multiflora	Rmu_sc0021695.1_g000001 Rmu_ssc0000269.1_g000001 Rmu_ssc0000269.1_g000004
rosa_roxburghii	Rroxscaffold_2G00136530
rosa_rugosa	Rorug02G0141000
rosa_samantha	Rh2AG191700 Rh2AG191800 Rh2BG203700 Rh2CG196900 Rh2CG197000 Rh2DG199000 Rh2DG199100
rosa_wichuraiana	Rw2G015160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	81
AjnI	CCWGG	1 cut(s)	248
AluBI	AGCT	4 cut(s)	42, 63, 221, 346
AluI	AGCT	4 cut(s)	42, 63, 221, 346
Alw26I	GTCTC	1 cut(s)	174
AoxI	GGCC	2 cut(s)	204, 290
ApeKI	GCWGC	3 cut(s)	152, 221, 343
AspS9I	GGNCC	1 cut(s)	276
AvaII	GGWCC	1 cut(s)	276
BbvI	GCAGC	3 cut(s)	139, 208, 355
BciT130I	CCWGG	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	2 cut(s)	296, 308
BfmI	CTRYAG	1 cut(s)	347
BisI	GCNGC	3 cut(s)	153, 222, 344
BlpI	GCTNAGC	1 cut(s)	59
BlsI	GCNGC	3 cut(s)	154, 223, 345
Bme1390I	CCNGG	1 cut(s)	250
Bme18I	GGWCC	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	250
BmsI	GCATC	1 cut(s)	330
Bpu1102I	GCTNAGC	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	206
BsaJI	CCNNGG	4 cut(s)	156, 207, 249, 279
BseBI	CCWGG	1 cut(s)	250
BseDI	CCNNGG	4 cut(s)	156, 207, 249, 279
BseMII	CTCAG	1 cut(s)	231
BseXI	GCAGC	3 cut(s)	139, 208, 355
BshFI	GGCC	2 cut(s)	206, 292
BsmAI	GTCTC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	206, 292
Bsp143I	GATC	2 cut(s)	117, 135
Bsp1720I	GCTNAGC	1 cut(s)	59
BspANI	GGCC	2 cut(s)	206, 292
BspCNI	CTCAG	1 cut(s)	230
BspLI	GGNNCC	1 cut(s)	34
BssECI	CCNNGG	4 cut(s)	156, 207, 249, 279
BssMI	GATC	2 cut(s)	117, 135
BssT1I	CCWWGG	3 cut(s)	156, 207, 279
Bst2UI	CCWGG	1 cut(s)	250
Bst4CI	ACNGT	1 cut(s)	29
BstDEI	CTNAG	3 cut(s)	59, 217, 323
BstKTI	GATC	2 cut(s)	120, 138
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	2 cut(s)	117, 135
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 152, 158, 349
BstNI	CCWGG	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	248
BstSFI	CTRYAG	1 cut(s)	347
BstV1I	GCAGC	3 cut(s)	139, 208, 355
BsuRI	GGCC	2 cut(s)	206, 292
Cfr13I	GGNCC	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	9 cut(s)	35, 42, 63, 206, 221, 237, 284, 292, 346
CviKI_1	RGCY	9 cut(s)	35, 42, 63, 206, 221, 237, 284, 292, 346
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	3 cut(s)	59, 217, 323
DpnI	GATC	2 cut(s)	119, 137
DpnII	GATC	2 cut(s)	117, 135
Eco130I	CCWWGG	3 cut(s)	156, 207, 279
Eco147I	AGGCCT	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	276
EcoRII	CCWGG	1 cut(s)	248
EcoT14I	CCWWGG	3 cut(s)	156, 207, 279
ErhI	CCWWGG	3 cut(s)	156, 207, 279
FaeI	CATG	1 cut(s)	182
FaiI	YATR	2 cut(s)	38, 180
FatI	CATG	1 cut(s)	178
Fnu4HI	GCNGC	3 cut(s)	153, 222, 344
Fsp4HI	GCNGC	3 cut(s)	153, 222, 344
FspBI	CTAG	2 cut(s)	296, 308
GluI	GCNGC	3 cut(s)	153, 222, 344
HaeIII	GGCC	2 cut(s)	206, 292
Hin1II	CATG	1 cut(s)	182
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	2 cut(s)	167, 319
Hpy188I	TCNGA	2 cut(s)	12, 140
HpyAV	CCTTC	1 cut(s)	267
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4V	TGCA	2 cut(s)	23, 343
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 152, 158, 349
HpyF3I	CTNAG	3 cut(s)	59, 217, 323
Hsp92II	CATG	1 cut(s)	182
Kzo9I	GATC	2 cut(s)	117, 135
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	3 cut(s)	158, 235, 262
Lsp1109I	GCAGC	3 cut(s)	139, 208, 355
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	2 cut(s)	296, 308
MaeIII	GTNAC	2 cut(s)	94, 303
MalI	GATC	2 cut(s)	119, 137
MboI	GATC	2 cut(s)	117, 135
MfeI	CAATTG	1 cut(s)	162
MluCI	AATT	2 cut(s)	141, 162
MlyI	GAGTC	2 cut(s)	176, 328
MnlI	CCTC	2 cut(s)	196, 303
MseI	TTAA	1 cut(s)	108
MspA1I	CMGCKG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	250
MunI	CAATTG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	250
MwoI	GCNNNNNNNGC	4 cut(s)	98, 152, 158, 349
NdeII	GATC	2 cut(s)	117, 135
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	94
PceI	AGGCCT	1 cut(s)	292
PkrI	GCNGC	3 cut(s)	154, 223, 345
PleI	GAGTC	2 cut(s)	175, 327
PpsI	GAGTC	2 cut(s)	175, 327
Psp6I	CCWGG	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	248
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	276
PvuII	CAGCTG	1 cut(s)	221
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	3 cut(s)	153, 222, 344
Sau3AI	GATC	2 cut(s)	117, 135
Sau96I	GGNCC	1 cut(s)	276
SchI	GAGTC	2 cut(s)	176, 328
ScrFI	CCNGG	1 cut(s)	250
SetI	ASST	7 cut(s)	44, 65, 223, 251, 264, 278, 348
SfaNI	GCATC	1 cut(s)	330
SfcI	CTRYAG	1 cut(s)	347
SinI	GGWCC	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	2 cut(s)	141, 162
SseBI	AGGCCT	1 cut(s)	292
SspMI	CTAG	2 cut(s)	296, 308
StuI	AGGCCT	1 cut(s)	292
StyD4I	CCNGG	1 cut(s)	248
StyI	CCWWGG	3 cut(s)	156, 207, 279
TaaI	ACNGT	1 cut(s)	29
TaqI	TCGA	2 cut(s)	116, 242
TasI	AATT	2 cut(s)	141, 162
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	3 cut(s)	152, 221, 343
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	2 cut(s)	17, 167
VpaK11BI	GGWCC	1 cut(s)	276
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XspI	CTAG	2 cut(s)	296, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.