Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021695.1

Orthogroup ID

OG0014828

Physical Location & Seq

Genomic Coordinates Reverse (-)

2088 .. 2990

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021695.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atgaggcacatagcatctgggagattagtcccaaggaactgttcctgtccttcagcaatggaaacaagagcagacctcaagggagtcaaatccgaagtccagaatctggttgaagagttacatggcacttgtgtaaatactcaaagagaagcaacacttcagctccgactactcgcaaagcataacatgaacaatcggattgttattgcaaactgtggagccataagctttttggtgggtttgcgaagctcaactgacaaaagggtacaagaaaatgctgtcacagcacttcttaatttgtcgatcaataatgacaacaagatcagaattgctactgctgccaaggcaattgagtctctggttcatgtgcttgagaataggagtgatgaggccaaggagaactcagctgccacattatttagcctttcgatgacctgggaaaaaaaggttcagattggaaggtccaaggctattaggcctctagttgagttactagggaatgggagtcttagaggggaaaaagatgcagctacagcattgtttagtttgttgatttttcgtgagaacagggaacggattgttcaagctggttctgtgaagtacttggtagagtttgtgatgaatccagaagctggaatagttgaccagactattgctgttttggctgctttttgtacaagtcatgaagggaggatagcaattgttgaggaaggtggggttcctgttctggttgaggttttgaagttaggatccgaaagaggcaaggagaatgcagctgctgctctattacagctctgcacaaatagtgaagaacaatgtagtatggtggttgataaaggagttgttccatctttggtggcaatgtcacaatccggcacccctaaggccaaagaaaatgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

300

Amino Acids

32.45

Weight (kDa)

8.45

Isoelectric Point (pI)

33.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014828)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G225500_v2.0.a1
pyrus_communis	pycom02g14680
rosa_chinensis	RchiOBHm_Chr2g0107221
rosa_laevigata	RLG00000017561
rosa_multiflora	Rmu_sc0021695.1_g000001 Rmu_ssc0000269.1_g000001 Rmu_ssc0000269.1_g000004
rosa_roxburghii	Rroxscaffold_2G00136530
rosa_rugosa	Rorug02G0141000
rosa_samantha	Rh2AG191700 Rh2AG191800 Rh2BG203700 Rh2CG196900 Rh2CG197000 Rh2DG199000 Rh2DG199100
rosa_wichuraiana	Rw2G015160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	875
AccB7I	CCANNNNNTGG	2 cut(s)	106, 632
AclWI	GGATC	2 cut(s)	744, 757
AcuI	CTGAAG	2 cut(s)	36, 143
AfaI	GTAC	3 cut(s)	267, 602, 676
AfiI	CCNNNNNNNGG	2 cut(s)	106, 632
AgsI	TTSAA	3 cut(s)	113, 584, 742
AjnI	CCWGG	1 cut(s)	434
AjuI	GAANNNNNNNTTGG	2 cut(s)	25, 57
AluBI	AGCT	9 cut(s)	163, 228, 249, 407, 530, 587, 632, 776, 793
AluI	AGCT	9 cut(s)	163, 228, 249, 407, 530, 587, 632, 776, 793
Alw26I	GTCTC	1 cut(s)	360
AlwI	GGATC	2 cut(s)	744, 757
AlwNI	CAGNNNCTG	3 cut(s)	106, 632, 779
AoxI	GGCC	3 cut(s)	390, 476, 885
ApeKI	GCWGC	7 cut(s)	338, 407, 527, 665, 773, 776, 779
ArsI	GACNNNNNNTTYG	2 cut(s)	81, 113
AspS9I	GGNCC	1 cut(s)	462
AvaII	GGWCC	1 cut(s)	462
AxyI	CCTNAGG	1 cut(s)	882
BamHI	GGATCC	1 cut(s)	749
BanI	GGYRCC	1 cut(s)	875
BbvI	GCAGC	7 cut(s)	325, 394, 539, 652, 763, 766, 785
BccI	CCATC	1 cut(s)	856
BciT130I	CCWGG	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	2 cut(s)	482, 494
BfmI	CTRYAG	1 cut(s)	531
BisI	GCNGC	7 cut(s)	339, 408, 528, 666, 774, 777, 780
BlsI	GCNGC	7 cut(s)	340, 409, 529, 667, 775, 778, 781
BmcAI	AGTACT	1 cut(s)	602
Bme1390I	CCNGG	1 cut(s)	436
Bme18I	GGWCC	1 cut(s)	462
BmgT120I	GGNCC	1 cut(s)	462
BmiI	GGNNCC	4 cut(s)	220, 720, 751, 877
BmrFI	CCNGG	1 cut(s)	436
BmsI	GCATC	2 cut(s)	23, 514
BplI	GAGNNNNNCTC	2 cut(s)	60, 92
BpuEI	CTTGAG	2 cut(s)	62, 392
BsaJI	CCNNGG	5 cut(s)	32, 342, 393, 435, 465
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 632
Bse21I	CCTNAGG	1 cut(s)	882
Bse3DI	GCAATG	2 cut(s)	63, 867
BseBI	CCWGG	1 cut(s)	436
BseDI	CCNNGG	5 cut(s)	32, 342, 393, 435, 465
BseLI	CCNNNNNNNGG	2 cut(s)	106, 632
BseMI	GCAATG	2 cut(s)	63, 867
BseMII	CTCAG	1 cut(s)	417
BseXI	GCAGC	7 cut(s)	325, 394, 539, 652, 763, 766, 785
BsgI	GTGCAG	1 cut(s)	781
BshFI	GGCC	3 cut(s)	392, 478, 887
BshNI	GGYRCC	1 cut(s)	875
BsiSI	CCGG	1 cut(s)	873
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	2 cut(s)	106, 632
BsmAI	GTCTC	1 cut(s)	360
BsmFI	GGGAC	1 cut(s)	14
BsmI	GAATGC	1 cut(s)	775
BsnI	GGCC	3 cut(s)	392, 478, 887
Bsp1407I	TGTACA	1 cut(s)	674
Bsp143I	GATC	3 cut(s)	303, 321, 749
BspANI	GGCC	3 cut(s)	392, 478, 887
BspCNI	CTCAG	1 cut(s)	416
BspHI	TCATGA	1 cut(s)	682
BspLI	GGNNCC	4 cut(s)	220, 720, 751, 877
BspPI	GGATC	2 cut(s)	744, 757
BspT107I	GGYRCC	1 cut(s)	875
BsrDI	GCAATG	2 cut(s)	63, 867
BsrGI	TGTACA	1 cut(s)	674
BssECI	CCNNGG	5 cut(s)	32, 342, 393, 435, 465
BssMI	GATC	3 cut(s)	303, 321, 749
BssT1I	CCWWGG	4 cut(s)	32, 342, 393, 465
Bst2UI	CCWGG	1 cut(s)	436
Bst4CI	ACNGT	2 cut(s)	41, 215
Bst6I	CTCTTC	1 cut(s)	108
BstAPI	GCANNNNNTGC	1 cut(s)	779
BstAUI	TGTACA	1 cut(s)	674
BstDEI	CTNAG	3 cut(s)	403, 509, 882
BstKTI	GATC	3 cut(s)	306, 324, 752
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	3 cut(s)	303, 321, 749
BstMWI	GCNNNNNNNGC	6 cut(s)	284, 338, 344, 533, 662, 779
BstNI	CCWGG	1 cut(s)	436
BstSCI	CCNGG	1 cut(s)	434
BstSFI	CTRYAG	1 cut(s)	531
BstV1I	GCAGC	7 cut(s)	325, 394, 539, 652, 763, 766, 785
BstX2I	RGATCY	1 cut(s)	749
BstYI	RGATCY	1 cut(s)	749
Bsu36I	CCTNAGG	1 cut(s)	882
BsuRI	GGCC	3 cut(s)	392, 478, 887
CaiI	CAGNNNCTG	3 cut(s)	106, 632, 779
CciI	TCATGA	1 cut(s)	682
Cfr13I	GGNCC	1 cut(s)	462
Csp6I	GTAC	3 cut(s)	266, 601, 675
CviAII	CATG	4 cut(s)	122, 187, 365, 683
CviQI	GTAC	3 cut(s)	266, 601, 675
DdeI	CTNAG	3 cut(s)	403, 509, 882
DpnI	GATC	3 cut(s)	305, 323, 751
DpnII	GATC	3 cut(s)	303, 321, 749
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco130I	CCWWGG	4 cut(s)	32, 342, 393, 465
Eco147I	AGGCCT	1 cut(s)	478
Eco47I	GGWCC	1 cut(s)	462
Eco57I	CTGAAG	2 cut(s)	36, 143
Eco81I	CCTNAGG	1 cut(s)	882
EcoRII	CCWGG	1 cut(s)	434
EcoT14I	CCWWGG	4 cut(s)	32, 342, 393, 465
ErhI	CCWWGG	4 cut(s)	32, 342, 393, 465
FaeI	CATG	4 cut(s)	125, 190, 368, 686
FaiI	YATR	9 cut(s)	11, 123, 183, 188, 224, 366, 684, 824, 901
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	4 cut(s)	121, 186, 364, 682
Fnu4HI	GCNGC	7 cut(s)	339, 408, 528, 666, 774, 777, 780
Fsp4HI	GCNGC	7 cut(s)	339, 408, 528, 666, 774, 777, 780
FspBI	CTAG	2 cut(s)	482, 494
GluI	GCNGC	7 cut(s)	339, 408, 528, 666, 774, 777, 780
HaeIII	GGCC	3 cut(s)	392, 478, 887
HapII	CCGG	1 cut(s)	873
Hin1II	CATG	4 cut(s)	125, 190, 368, 686
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HindIII	AAGCTT	1 cut(s)	226
HinfI	GANTC	5 cut(s)	84, 103, 353, 505, 622
HpaII	CCGG	1 cut(s)	873
Hpy166II	GTNNAC	1 cut(s)	643
Hpy188I	TCNGA	6 cut(s)	94, 167, 198, 326, 453, 754
Hpy188III	TCNNGA	4 cut(s)	100, 560, 626, 683
Hpy8I	GTNNAC	1 cut(s)	643
HpyAV	CCTTC	4 cut(s)	60, 453, 680, 704
HpyCH4III	ACNGT	2 cut(s)	41, 215
HpyCH4V	TGCA	4 cut(s)	209, 527, 773, 798
HpyF10VI	GCNNNNNNNGC	6 cut(s)	284, 338, 344, 533, 662, 779
HpyF3I	CTNAG	3 cut(s)	403, 509, 882
Hsp92II	CATG	4 cut(s)	125, 190, 368, 686
Kzo9I	GATC	3 cut(s)	303, 321, 749
LmnI	GCTCC	2 cut(s)	168, 218
Lsp1109I	GCAGC	7 cut(s)	325, 394, 539, 652, 763, 766, 785
LweI	GCATC	2 cut(s)	23, 514
MaeI	CTAG	2 cut(s)	482, 494
MaeIII	GTNAC	4 cut(s)	117, 280, 489, 864
MalI	GATC	3 cut(s)	305, 323, 751
MboI	GATC	3 cut(s)	303, 321, 749
MboII	GAAGA	2 cut(s)	125, 821
MfeI	CAATTG	2 cut(s)	348, 699
MflI	RGATCY	1 cut(s)	749
MluCI	AATT	4 cut(s)	295, 327, 348, 699
MlyI	GAGTC	3 cut(s)	93, 362, 514
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	8 cut(s)	86, 382, 489, 506, 684, 700, 727, 752
MseI	TTAA	1 cut(s)	294
MspA1I	CMGCKG	2 cut(s)	407, 776
MspI	CCGG	1 cut(s)	873
MspR9I	CCNGG	1 cut(s)	436
MunI	CAATTG	2 cut(s)	348, 699
Mva1269I	GAATGC	1 cut(s)	775
MvaI	CCWGG	1 cut(s)	436
MwoI	GCNNNNNNNGC	6 cut(s)	284, 338, 344, 533, 662, 779
NdeII	GATC	3 cut(s)	303, 321, 749
NlaIII	CATG	4 cut(s)	125, 190, 368, 686
NlaIV	GGNNCC	4 cut(s)	220, 720, 751, 877
NmuCI	GTSAC	2 cut(s)	280, 864
PagI	TCATGA	1 cut(s)	682
PceI	AGGCCT	1 cut(s)	478
PctI	GAATGC	1 cut(s)	775
PfeI	GAWTC	2 cut(s)	103, 622
PflMI	CCANNNNNTGG	2 cut(s)	106, 632
PkrI	GCNGC	7 cut(s)	340, 409, 529, 667, 775, 778, 781
PleI	GAGTC	3 cut(s)	92, 361, 513
PpsI	GAGTC	3 cut(s)	92, 361, 513
Psp6I	CCWGG	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	434
PspN4I	GGNNCC	4 cut(s)	220, 720, 751, 877
PspPI	GGNCC	1 cut(s)	462
PstNI	CAGNNNCTG	3 cut(s)	106, 632, 779
PsuI	RGATCY	1 cut(s)	749
PvuII	CAGCTG	2 cut(s)	407, 776
RsaI	GTAC	3 cut(s)	267, 602, 676
RsaNI	GTAC	3 cut(s)	266, 601, 675
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	7 cut(s)	339, 408, 528, 666, 774, 777, 780
Sau3AI	GATC	3 cut(s)	303, 321, 749
Sau96I	GGNCC	1 cut(s)	462
ScaI	AGTACT	1 cut(s)	602
SchI	GAGTC	3 cut(s)	93, 362, 514
ScrFI	CCNGG	1 cut(s)	436
SfaNI	GCATC	2 cut(s)	23, 514
SfcI	CTRYAG	1 cut(s)	531
SinI	GGWCC	1 cut(s)	462
SmlI	CTYRAG	2 cut(s)	77, 371
SmoI	CTYRAG	2 cut(s)	77, 371
Sse9I	AATT	4 cut(s)	295, 327, 348, 699
SseBI	AGGCCT	1 cut(s)	478
SspMI	CTAG	2 cut(s)	482, 494
StuI	AGGCCT	1 cut(s)	478
StyD4I	CCNGG	1 cut(s)	434
StyI	CCWWGG	4 cut(s)	32, 342, 393, 465
TaaI	ACNGT	2 cut(s)	41, 215
TaqI	TCGA	2 cut(s)	302, 428
TasI	AATT	4 cut(s)	295, 327, 348, 699
TatI	WGTACW	2 cut(s)	600, 674
TfiI	GAWTC	2 cut(s)	103, 622
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TseFI	GTSAC	2 cut(s)	280, 864
TseI	GCWGC	7 cut(s)	338, 407, 527, 665, 773, 776, 779
Tsp45I	GTSAC	2 cut(s)	280, 864
TspDTI	ATGAA	4 cut(s)	203, 353, 635, 699
TspGWI	ACGGA	1 cut(s)	589
Van91I	CCANNNNNTGG	2 cut(s)	106, 632
VpaK11BI	GGWCC	1 cut(s)	462
XcmI	CCANNNNNNNNNTGG	1 cut(s)	229
XspI	CTAG	2 cut(s)	482, 494
ZrmI	AGTACT	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.