Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0014828

Physical Location & Seq

Genomic Coordinates Forward (+)

18793108 .. 18794559

Gene Structure 1452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG197000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAATCCAGAAGCTGGAATAGTTTACCAGACTATTGCTGTTTTGGCTGCTTTTTGTACAAGTCATGAAGGGAGGATAGCAATTGTTGAGGAAGGTGGGGTTCCTGTTCTGGTTGAGGTTTTGAAGTTAGGTTCCGAAAGAGGCAAGGAGAATGCAGCTGCTGCTCTATTACAGCTCTGCACAAGTAGTGATGAACAATGTAGTATGGTGGTTGATAAAGGAGTTGTTCCATCTTTGGTGGCAATGTCACAATCTGGCACCCCAAGGGCCAAAGAAAATGCACAAACACTCCTCACCTTTTTATGGGGAGGAGTCCTGTATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm U-box

Protein Analysis

108

Amino Acids

11.32

Weight (kDa)

4.81

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_PUB	PF25598	11 - 98	2.2e-10	Plant U-box protein ARM repeat region
Arm	PF00514	22 - 60	9.4e-07	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014828)

Species	Orthologous Gene IDs
prunus_persica	Prupe.6G225500_v2.0.a1
pyrus_communis	pycom02g14680
rosa_chinensis	RchiOBHm_Chr2g0107221
rosa_laevigata	RLG00000017561
rosa_multiflora	Rmu_sc0021695.1_g000001 Rmu_ssc0000269.1_g000001 Rmu_ssc0000269.1_g000004
rosa_roxburghii	Rroxscaffold_2G00136530
rosa_rugosa	Rorug02G0141000
rosa_samantha	Rh2AG191700 Rh2AG191800 Rh2BG203700 Rh2CG196900 Rh2CG197000 Rh2DG199000 Rh2DG199100
rosa_wichuraiana	Rw2G015160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	257
AccB7I	CCANNNNNTGG	1 cut(s)	14
AfaI	GTAC	1 cut(s)	58
AfiI	CCNNNNNNNGG	2 cut(s)	14, 303
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	3 cut(s)	14, 158, 175
AluI	AGCT	3 cut(s)	14, 158, 175
AlwNI	CAGNNNCTG	2 cut(s)	14, 161
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	4 cut(s)	47, 155, 158, 161
AspS9I	GGNCC	1 cut(s)	267
AsuHPI	GGTGA	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	257
BbvI	GCAGC	4 cut(s)	34, 145, 148, 167
BccI	CCATC	1 cut(s)	238
BisI	GCNGC	4 cut(s)	48, 156, 159, 162
BlsI	GCNGC	4 cut(s)	49, 157, 160, 163
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	3 cut(s)	102, 133, 259
BsaJI	CCNNGG	1 cut(s)	263
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 303
Bse3DI	GCAATG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	263
BseLI	CCNNNNNNNGG	2 cut(s)	14, 303
BseMI	GCAATG	1 cut(s)	249
BseRI	GAGGAG	2 cut(s)	281, 324
BseXI	GCAGC	4 cut(s)	34, 145, 148, 167
BsgI	GTGCAG	1 cut(s)	163
BshFI	GGCC	1 cut(s)	269
BshNI	GGYRCC	1 cut(s)	257
BslI	CCNNNNNNNGG	2 cut(s)	14, 303
BsmI	GAATGC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	269
Bsp1407I	TGTACA	1 cut(s)	56
BspANI	GGCC	1 cut(s)	269
BspHI	TCATGA	1 cut(s)	64
BspLI	GGNNCC	3 cut(s)	102, 133, 259
BspT107I	GGYRCC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	249
BsrGI	TGTACA	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	263
BssT1I	CCWWGG	1 cut(s)	263
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstAUI	TGTACA	1 cut(s)	56
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 161
BstV1I	GCAGC	4 cut(s)	34, 145, 148, 167
BsuRI	GGCC	1 cut(s)	269
CaiI	CAGNNNCTG	2 cut(s)	14, 161
CciI	TCATGA	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	57
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	5 cut(s)	14, 47, 158, 175, 269
CviKI_1	RGCY	5 cut(s)	14, 47, 158, 175, 269
CviQI	GTAC	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	263
FaeI	CATG	1 cut(s)	68
FaiI	YATR	4 cut(s)	66, 206, 304, 321
FatI	CATG	1 cut(s)	64
Fnu4HI	GCNGC	4 cut(s)	48, 156, 159, 162
Fsp4HI	GCNGC	4 cut(s)	48, 156, 159, 162
GluI	GCNGC	4 cut(s)	48, 156, 159, 162
HaeIII	GGCC	1 cut(s)	269
Hin1II	CATG	1 cut(s)	68
HinfI	GANTC	2 cut(s)	4, 312
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	2 cut(s)	8, 65
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	2 cut(s)	62, 86
HpyCH4V	TGCA	3 cut(s)	155, 180, 281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 161
Hsp92II	CATG	1 cut(s)	68
LpnPI	CCDG	5 cut(s)	21, 41, 95, 117, 240
Lsp1109I	GCAGC	4 cut(s)	34, 145, 148, 167
MaeIII	GTNAC	1 cut(s)	246
MfeI	CAATTG	1 cut(s)	81
MluCI	AATT	1 cut(s)	81
MlyI	GAGTC	1 cut(s)	321
MnlI	CCTC	6 cut(s)	66, 82, 109, 134, 302, 302
MseI	TTAA	1 cut(s)	325
MspA1I	CMGCKG	1 cut(s)	158
MunI	CAATTG	1 cut(s)	81
Mva1269I	GAATGC	1 cut(s)	157
MwoI	GCNNNNNNNGC	2 cut(s)	44, 161
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	3 cut(s)	102, 133, 259
NmuCI	GTSAC	1 cut(s)	246
PagI	TCATGA	1 cut(s)	64
PctI	GAATGC	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	4
PflMI	CCANNNNNTGG	1 cut(s)	14
PkrI	GCNGC	4 cut(s)	49, 157, 160, 163
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
PspN4I	GGNNCC	3 cut(s)	102, 133, 259
PspPI	GGNCC	1 cut(s)	267
PstNI	CAGNNNCTG	2 cut(s)	14, 161
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	325
SatI	GCNGC	4 cut(s)	48, 156, 159, 162
Sau96I	GGNCC	1 cut(s)	267
SchI	GAGTC	1 cut(s)	321
SetI	ASST	7 cut(s)	16, 97, 120, 133, 160, 177, 299
Sse9I	AATT	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	263
TasI	AATT	1 cut(s)	81
TatI	WGTACW	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	325
Tru9I	TTAA	1 cut(s)	325
TseFI	GTSAC	1 cut(s)	246
TseI	GCWGC	4 cut(s)	47, 155, 158, 161
Tsp45I	GTSAC	1 cut(s)	246
TspDTI	ATGAA	3 cut(s)	17, 81, 207
Van91I	CCANNNNNTGG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.